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Gene: Spatc1 (spermatogenesis and centriole associated 1) Rattus norvegicus
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Symbol: Spatc1
Name: spermatogenesis and centriole associated 1
Description: Predicted to have gamma-tubulin binding activity. Predicted to localize to the centrosome and cytoplasm. Orthologous to human SPATC1 (spermatogenesis and centriole associated 1); INTERACTS WITH 3-chloropropane-1,2-diol; endosulfan; ketamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: hypothetical protein LOC315091; LOC315091; RGD1565316; similar to sphingomyelin phosphodiesterase 3, neutral membrane; speriolin; uncharacterized protein LOC315091
Orthologs:
Homo sapiens (human) : SPATC1 (spermatogenesis and centriole associated 1)  HGNC  Alliance
Mus musculus (house mouse) : Spatc1 (spermatogenesis and centriole associated 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Spatc1 (spermatogenesis and centriole associated 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SPATC1 (spermatogenesis and centriole associated 1)
Canis lupus familiaris (dog) : SPATC1 (spermatogenesis and centriole associated 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Spatc1 (spermatogenesis and centriole associated 1)
Sus scrofa (pig) : SPATC1 (spermatogenesis and centriole associated 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07117,326,279 - 117,349,957 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,326,279 - 117,349,957 (+)Ensembl
Rnor_5.07117,312,037 - 117,335,715 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,299,064 - 114,322,742 (+)NCBIRGSC3.4rn4RGSC3.4
Celera7104,336,499 - 104,360,177 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Spatc1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1565316
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.