Cbx5 (chromobox 5) - Rat Genome Database

Name: Cbx5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Cbx5 (chromobox 5) Rattus norvegicus

Analyze

Symbol:

Cbx5

Name:

chromobox 5

RGD ID:

1306619

Description:

Predicted to enable several functions, including histone deacetylase binding activity; identical protein binding activity; and methylated histone binding activity. Predicted to be involved in DNA damage response; chromatin organization; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of DNA-templated transcription. Predicted to be located in chromocenter; chromosome; and nuclear lumen. Predicted to be part of several cellular components, including nucleoplasm; pericentric heterochromatin; and transcription repressor complex. Predicted to colocalize with PML body. Orthologous to human CBX5 (chromobox 5); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

chromobox homolog 5; chromobox homolog 5 (Drosophila HP1a) ; chromobox homolog 5 (HP1 alpha homolog, Drosophila); chromobox protein homolog 5; LOC300266

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CBX5 (chromobox 5)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cbx5 (chromobox 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cbx5 (chromobox 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CBX5 (chromobox 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CBX5 (chromobox 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cbx5 (chromobox 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CBX5 (chromobox 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CBX5 (chromobox 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cbx5 (chromobox 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CBX5 (chromobox 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cbx5 (chromobox 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cbx5 (chromobox homolog 5 (HP1 alpha homolog, Drosophila))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	HP1b	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	HP1c	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	hpl-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Su(var)205	Alliance	DIOPT (Hieranoid\|OMA\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	cbx5	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	134,333,165 - 134,376,102 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	134,331,335 - 134,375,022 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	136,088,404 - 136,105,880 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	138,317,781 - 138,335,258 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	138,303,847 - 138,321,314 (-)	NCBI	Rnor_WKY
Rnor_6.0	7	144,819,673 - 144,865,014 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	144,819,420 - 144,837,583 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	142,605,275 - 142,647,738 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	142,107,922 - 142,125,543 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	142,187,961 - 142,229,833 (-)	NCBI
Celera	7	130,758,832 - 130,776,255 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Colorectal Neoplasms (ISO)

lung adenocarcinoma (ISO)

Lung Neoplasms (ISO)

Neoplasm Metastasis (ISO)

Neurodevelopmental Disorders (ISO)

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(1->4)-beta-D-glucan (ISO)

(S)-nicotine (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

all-trans-retinoic acid (ISO)

atrazine (ISO)

benzatropine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

butanal (ISO)

butylated hydroxyanisole (EXP)

caffeine (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

Cuprizon (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

entinostat (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

fenbendazole (EXP)

formaldehyde (ISO)

genistein (ISO)

haloperidol (ISO)

hydrogen peroxide (ISO)

ivermectin (ISO)

leflunomide (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

methylparaben (ISO)

N-methyl-N'-nitro-N-nitrosoguanidine (ISO)

N-nitrosodiethylamine (ISO)

nicotine (ISO)

O-methyleugenol (EXP)

oxaliplatin (EXP)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenethyl isothiocyanate (ISO)

phenylmercury acetate (ISO)

pirinixic acid (EXP,ISO)

pregnenolone 16alpha-carbonitrile (EXP)

quercetin (ISO)

resveratrol (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone enanthate (ISO)

thimerosal (ISO)

thioacetamide (EXP)

topotecan (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (EXP)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

vincristine (ISO)

vitamin E (ISO)

vorinostat (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

chromatin organization (IBA)

DNA damage response (ISO)

negative regulation of DNA-templated transcription (ISO)

negative regulation of transcription by RNA polymerase II (IBA,ISO)

Cellular Component

chromocenter (ISO)

chromosome, telomeric region (ISO)

heterochromatin (ISO)

histone deacetylase complex (ISO)

histone methyltransferase complex (ISO)

kinetochore (ISO)

nucleolus (ISO)

nucleoplasm (ISO)

nucleus (ISO)

pericentric heterochromatin (IBA,ISO)

PML body (ISO)

protein-containing complex (ISO)

ribonucleoprotein complex (ISO)

site of DNA damage (ISO)

transcription repressor complex (ISO)

Molecular Function

chromatin binding (IBA,ISO)

DNA-binding transcription factor binding (ISO)

histone deacetylase binding (ISO)

identical protein binding (ISO)

methylated histone binding (IBA,ISO)

protein binding (ISO)

protein-containing complex binding (ISO)

protein-macromolecule adaptor activity (ISO)

ribonucleoprotein complex binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Readout of epigenetic modifications.	Patel DJ and Wang Z, Annu Rev Biochem. 2013;82:81-118. doi: 10.1146/annurev-biochem-072711-165700.
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Comprehensive gene review and curation	RGD comprehensive gene curation
8.	The heterochromatin protein 1 family is regulated in prostate development and cancer.	Shapiro E, etal., J Urol. 2008 Jun;179(6):2435-9. doi: 10.1016/j.juro.2008.01.091. Epub 2008 Apr 23.
9.	Network biology of tumor stem-like cells identified a regulatory role of CBX5 in lung cancer.	Yu YH, etal., Sci Rep. 2012;2:584. doi: 10.1038/srep00584. Epub 2012 Aug 16.

Additional References at PubMed

PMID:8978696	PMID:9636146	PMID:9636147	PMID:10318760	PMID:10562550	PMID:12242305	PMID:12477932	PMID:14519686	PMID:14730304	PMID:15070898	PMID:15998811	PMID:16127177
PMID:17284516	PMID:18716626	PMID:19135898	PMID:19617346	PMID:19783980	PMID:20110566	PMID:20219459	PMID:21029866	PMID:21888893	PMID:22101327	PMID:27248496

Genomics

Comparative Map Data

Cbx5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	134,333,165 - 134,376,102 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	134,331,335 - 134,375,022 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	136,088,404 - 136,105,880 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	138,317,781 - 138,335,258 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	138,303,847 - 138,321,314 (-)	NCBI	Rnor_WKY
Rnor_6.0	7	144,819,673 - 144,865,014 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	144,819,420 - 144,837,583 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	142,605,275 - 142,647,738 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	142,107,922 - 142,125,543 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	142,187,961 - 142,229,833 (-)	NCBI
Celera	7	130,758,832 - 130,776,255 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

CBX5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	54,230,942 - 54,280,122 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	12	54,230,942 - 54,280,133 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	54,624,726 - 54,673,906 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	52,921,677 - 52,960,151 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	52,921,677 - 52,960,151	NCBI
Celera	12	54,276,743 - 54,325,894 (-)	NCBI		Celera
Cytogenetic Map	12	q13.13	NCBI
HuRef	12	51,663,959 - 51,713,186 (-)	NCBI		HuRef
CHM1_1	12	54,591,455 - 54,640,653 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	54,197,516 - 54,246,699 (-)	NCBI		T2T-CHM13v2.0

Cbx5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	103,099,973 - 103,148,337 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	103,099,971 - 103,148,243 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	103,191,546 - 103,239,904 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	103,191,544 - 103,239,816 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	103,021,977 - 103,070,247 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	103,019,130 - 103,043,372 (-)	NCBI		MGSCv36	mm8
Celera	15	105,352,806 - 105,401,405 (-)	NCBI		Celera
Cytogenetic Map	15	F3	NCBI

Cbx5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	1,486,951 - 1,505,653 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	1,486,951 - 1,529,649 (-)	NCBI	ChiLan1.0	ChiLan1.0

CBX5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	12	39,887,905 - 39,945,708 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	34,463,826 - 34,521,656 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	35,189,095 - 35,246,660 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	35,218,239 - 35,236,009 (+)	Ensembl	panpan1.1		panPan2

CBX5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	1,020,500 - 1,058,027 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	1,039,594 - 1,049,788 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	45,197,396 - 45,234,943 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	1,017,407 - 1,054,956 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	1,017,441 - 1,054,183 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	1,036,373 - 1,073,913 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	1,017,977 - 1,055,663 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	45,601,201 - 45,638,748 (-)	NCBI		UU_Cfam_GSD_1.0

Cbx5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	61,683,589 - 61,723,060 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	11,450,060 - 11,480,727 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936512	11,441,770 - 11,480,924 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CBX5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	19,446,086 - 19,484,463 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	19,446,083 - 19,484,527 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	20,290,445 - 20,329,012 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CBX5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	50,350,440 - 50,396,595 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	50,353,638 - 50,396,608 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	195,645,487 - 195,688,609 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cbx5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624904	2,276,036 - 2,296,706 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624904	2,273,054 - 2,313,723 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cbx5
63 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	84
Count of miRNA genes:	64
Interacting mature miRNAs:	82
Transcripts:	ENSRNOT00000055289
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	64002457	135012528	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	90482196	135012528	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	91281130	135012528	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	96670164	135012528	Rat
731174	Uae23	Urinary albumin excretion QTL 23	2.4	0.0042	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	7	104603555	135012528	Rat
2306821	Bp335	Blood pressure QTL 335		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	106571501	135012528	Rat
631663	Bw6	Body weight QTL 6	3.4		body mass (VT:0001259)	body weight (CMO:0000012)	7	111075573	134976056	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	111182207	135012528	Rat
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	119513385	135012528	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	54	38	19	38	7	7	74	35	41	11	7
Low			3	3		3	1	4					1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168739	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000055289 ⟹ ENSRNOP00000052163

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	134,333,166 - 134,350,641 (-)	Ensembl
Rnor_6.0 Ensembl	7	144,819,730 - 144,837,583 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000089024 ⟹ ENSRNOP00000073453

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	134,331,335 - 134,350,478 (-)	Ensembl
Rnor_6.0 Ensembl	7	144,819,420 - 144,837,395 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000120168 ⟹ ENSRNOP00000087859

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	134,333,453 - 134,375,022 (-)	Ensembl

RefSeq Acc Id:

NM_001106797 ⟹ NP_001100267

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	134,333,165 - 134,350,641 (-)	NCBI
Rnor_6.0	7	144,819,729 - 144,837,583 (-)	NCBI
Rnor_5.0	7	142,605,275 - 142,647,738 (-)	NCBI
RGSC_v3.4	7	142,107,922 - 142,125,543 (-)	RGD
Celera	7	130,758,832 - 130,776,255 (-)	RGD

Sequence:

show sequence

AGCCCAGAGGGAAAGAACGAACTGGGGCGATCCGGTAGGTAAGGGAAGGCCATAGCCACAATGC
TTAACTGCATGCTTCCAACATGGGGCTGGTTTTAACCCAGCGCTCTGACCTAAAGTGCTCAGCT
CCCGGAAATTCCAAGGAACCTGGTGGCCGCACTCCTTTAGGTGGACCAACACATACCCAACATG
GGAAAGAAGACCAAGAGGACAGCCGACAGCTCTTCATCAGAGGATGAGGAGGAGTATGTGGTGG
AAAAGGTGTTGGACAGGCGCATGGTTAAAGGGCAAGTGGAGTATCTGCTGAAGTGGAAAGGCTT
TTCTGAGGAGCACAACACTTGGGAACCTGAGAAGAACTTGGATTGTCCTGAACTAATTTCTGAG
TTTATGAAAAAGTACAAGAAGATGAAGGAGGGAGAGAACAACAAGCCTAGGGAGAAGTCAGAAG
GAAACAAGAGGAAATCCAGTTTTTCCAACAGTGCTGATGATATTAAATCCAAAAAAAAGAGAGA
GCAAAGCAATGATATCGCTCGGGGCTTTGAGAGAGGACTGGAACCAGAAAAGATCATTGGGGCG
ACAGATTCCTGTGGAGACTTAATGTTCTTAATGAAATGGAAAGACACAGATGAAGCTGACCTGG
TCCTTGCAAAAGAAGCTAATGTGAAATGTCCACAAATTGTGATAGCATTTTATGAAGAGAGACT
GACGTGGCATGCGTATCCAGAGGATGCGGAAAACAAAGAAAAAGAAAGCGCAAAGAGCTAAAGG
AGGAGGCAGTCTCTGTCATTTCTCTTTGTATATAATACCTTCACCTTCCTGCCTCCTCTCGCTT
CTCCCGTCCCTTTCCATCCTAAACATATCCATAAAAATGATGTGCTTATCAATCACTGTGCTCC
ACGGGAGAGATGTTGGTATTGGTTCCCTTGTAATATAACTGATGGTCTGACTCCTAAGTGTAGC
TCTGTGAAAGTCAGGCATTACATCCTTCACATGCTGTGTGGTTCCCATAGTGTTCTCTTTCATC
CTGATCTTTTCCTTCTGTTCCCTGTAACTTTTAATCACCTTAGAGTCGTGATCTTTGGGGTTGG
TTGCTTTGGGGAATTTTATTATAATGACGATGACTTCAGTTTCTTGGTTGTTAATTAGAATATA
TTGATGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006242391 ⟹ XP_006242453

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	134,333,165 - 134,350,664 (-)	NCBI
Rnor_6.0	7	144,820,007 - 144,837,654 (-)	NCBI
Rnor_5.0	7	142,605,275 - 142,647,738 (-)	NCBI

Sequence:

show sequence

GCAGCTGGGTGGGGGCGGGGGAGCTGCCAGCCCGCCAAGCCCCAGACCTGGGAGGGGAGGCCCC
TCCTGTTAGCCCAGAGGGAAAGAACGAACTGGGGCGATCCGGGAAGGCCATAGCCACAATGCTT
AACTGCATGCTTCCAACATGGGGCTGGTTTTAACCCAGCGCTCTGACCTAAAGTGCTCAGCTCC
CGGAAATTCCAAGGAACCTGGTGGCCGCACTCCTTTAGGTGGACCAACACATACCCAACATGGG
AAAGAAGACCAAGAGGACAGCCGACAGCTCTTCATCAGAGGATGAGGAGGAGTATGTGGTGGAA
AAGGTGTTGGACAGGCGCATGGTTAAAGGGCAAGTGGAGTATCTGCTGAAGTGGAAAGGCTTTT
CTGAGGAGCACAACACTTGGGAACCTGAGAAGAACTTGGATTGTCCTGAACTAATTTCTGAGTT
TATGAAAAAGTACAAGAAGATGAAGGAGGGAGAGAACAACAAGCCTAGGGAGAAGTCAGAAGGA
AACAAGAGGAAATCCAGTTTTTCCAACAGTGCTGATGATATTAAATCCAAAAAAAAGAGAGAGC
AAAGCAATGATATCGCTCGGGGCTTTGAGAGAGGACTGGAACCAGAAAAGATCATTGGGGCGAC
AGATTCCTGTGGAGACTTAATGTTCTTAATGAAATGGAAAGACACAGATGAAGCTGACCTGGTC
CTTGCAAAAGAAGCTAATGTGAAATGTCCACAAATTGTGATAGCATTTTATGAAGAGAGACTGA
CGTGGCATGCGTATCCAGAGGATGCGGAAAACAAAGAAAAAGAAAGCGCAAAGAGCTAAAGGAG
GAGGCAGTCTCTGTCATTTCTCTTTGTATATAATACCTTCACCTTCCTGCCTCCTCTCGCTTCT
CCCGTCCCTTTCCATCCTAAACATATCCATAAAAATGATGTGCTTATCAA

hide sequence

RefSeq Acc Id:

XM_006242393 ⟹ XP_006242455

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	134,333,165 - 134,350,729 (-)	NCBI
Rnor_6.0	7	144,820,007 - 144,837,654 (-)	NCBI
Rnor_5.0	7	142,605,275 - 142,647,738 (-)	NCBI

Sequence:

show sequence

GCAGCTGGGTGGGGGCGGGGGAGCTGCCAGCCCGCCAAGCCCCAGACCTGGGAGGGGAGGCCCC
TCCTGTTAGCCCAGAGGGAAAGAACGAACTGGGGCGATCCGGAACCTGGTGGCCGCACTCCTTT
AGGTGGACCAACACATACCCAACATGGGAAAGAAGACCAAGAGGACAGCCGACAGCTCTTCATC
AGAGGATGAGGAGGAGTATGTGGTGGAAAAGGTGTTGGACAGGCGCATGGTTAAAGGGCAAGTG
GAGTATCTGCTGAAGTGGAAAGGCTTTTCTGAGGAGCACAACACTTGGGAACCTGAGAAGAACT
TGGATTGTCCTGAACTAATTTCTGAGTTTATGAAAAAGTACAAGAAGATGAAGGAGGGAGAGAA
CAACAAGCCTAGGGAGAAGTCAGAAGGAAACAAGAGGAAATCCAGTTTTTCCAACAGTGCTGAT
GATATTAAATCCAAAAAAAAGAGAGAGCAAAGCAATGATATCGCTCGGGGCTTTGAGAGAGGAC
TGGAACCAGAAAAGATCATTGGGGCGACAGATTCCTGTGGAGACTTAATGTTCTTAATGAAATG
GAAAGACACAGATGAAGCTGACCTGGTCCTTGCAAAAGAAGCTAATGTGAAATGTCCACAAATT
GTGATAGCATTTTATGAAGAGAGACTGACGTGGCATGCGTATCCAGAGGATGCGGAAAACAAAG
AAAAAGAAAGCGCAAAGAGCTAAAGGAGGAGGCAGTCTCTGTCATTTCTCTTTGTATATAATAC
CTTCACCTTCCTGCCTCCTCTCGCTTCTCCCGTCCCTTTCCATCCTAAACATATCCATAAAAAT
GATGTGCTTATCAA

hide sequence

RefSeq Acc Id:

XM_008765707 ⟹ XP_008763929

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	134,333,165 - 134,375,058 (-)	NCBI
Rnor_6.0	7	144,819,673 - 144,865,014 (-)	NCBI

Sequence:

show sequence

ATCCGTTTTGGCGGCGGTTGGCATTGCGCAGAGGCGGCGGTAGCGGTGGCTTGTGGTGCCGCTT
TGCCCAGAGGAACCGTGCAGGCCTTAGTGTGAGTGATCACTTTAGATCCCGGGAACCTGGTGGC
CGCACTCCTTTAGGTGGACCAACACATACCCAACATGGGAAAGAAGACCAAGAGGACAGCCGAC
AGCTCTTCATCAGAGGATGAGGAGGAGTATGTGGTGGAAAAGGTGTTGGACAGGCGCATGGTTA
AAGGGCAAGTGGAGTATCTGCTGAAGTGGAAAGGCTTTTCTGAGGAGCACAACACTTGGGAACC
TGAGAAGAACTTGGATTGTCCTGAACTAATTTCTGAGTTTATGAAAAAGTACAAGAAGATGAAG
GAGGGAGAGAACAACAAGCCTAGGGAGAAGTCAGAAGGAAACAAGAGGAAATCCAGTTTTTCCA
ACAGTGCTGATGATATTAAATCCAAAAAAAAGAGAGAGCAAAGCAATGATATCGCTCGGGGCTT
TGAGAGAGGACTGGAACCAGAAAAGATCATTGGGGCGACAGATTCCTGTGGAGACTTAATGTTC
TTAATGAAATGGAAAGACACAGATGAAGCTGACCTGGTCCTTGCAAAAGAAGCTAATGTGAAAT
GTCCACAAATTGTGATAGCATTTTATGAAGAGAGACTGACGTGGCATGCGTATCCAGAGGATGC
GGAAAACAAAGAAAAAGAAAGCGCAAAGAGCTAAAGGAGGAGGCAGTCTCTGTCATTTCTCTTT
GTATATAATACCTTCACCTTCCTGCCTCCTCTCGCTTCTCCCGTCCCTTTCCATCCTAAACATA
TCCATAAAAATGATGTGCTTATCAATCACTGTGCTCCACGGGAGAGATGTTGGTATTGGTTCCC
TTGTAATATAACTGATGGTCTGACTCCTAAGTGTAGCTCTGTGAAAGTCAGGCATTACATCCTT
CACATGCTGTGTGGTTCCCATAGTGTTCTCTTTCATCCTGATCTTTTCCTTCTGTTCCCTGTAA
CTTTTAATCACCTTAGAGTCGTGATCTTTGGGGTTGGTTGCTTTGGGGAATTTTATTATAATGA
CGATGACTTCAGTTTCTTGGTTGTTAATTAGAATATATTGATGACCAGCTGGCCTTTGTTTTGA
CATACTGGCATAGAAAGGATGTTGTCCAGCTTTTAGAAA

hide sequence

RefSeq Acc Id:

XM_017594793 ⟹ XP_017450282

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	134,333,165 - 134,350,632 (-)	NCBI
Rnor_6.0	7	144,820,007 - 144,837,402 (-)	NCBI

Sequence:

show sequence

GCAGGGAAGGCCATAGCCACAATGCTTAACTGCATGCTTCCAACATGGGGCTGGTTTTAACCCA
GCGCTCTGACCTAAAGTGCTCAGCTCCCGGAAATTCCAAGGAACCTGGTGGCCGCACTCCTTTA
GGTGGACCAACACATACCCAACATGGGAAAGAAGACCAAGAGGACAGCCGACAGCTCTTCATCA
GAGGATGAGGAGGAGTATGTGGTGGAAAAGGTGTTGGACAGGCGCATGGTTAAAGGGCAAGTGG
AGTATCTGCTGAAGTGGAAAGGCTTTTCTGAGGAGCACAACACTTGGGAACCTGAGAAGAACTT
GGATTGTCCTGAACTAATTTCTGAGTTTATGAAAAAGTACAAGAAGATGAAGGAGGGAGAGAAC
AACAAGCCTAGGGAGAAGTCAGAAGGAAACAAGAGGAAATCCAGTTTTTCCAACAGTGCTGATG
ATATTAAATCCAAAAAAAAGAGAGAGCAAAGCAATGATATCGCTCGGGGCTTTGAGAGAGGACT
GGAACCAGAAAAGATCATTGGGGCGACAGATTCCTGTGGAGACTTAATGTTCTTAATGAAATGG
AAAGACACAGATGAAGCTGACCTGGTCCTTGCAAAAGAAGCTAATGTGAAATGTCCACAAATTG
TGATAGCATTTTATGAAGAGAGACTGACGTGGCATGCGTATCCAGAGGATGCGGAAAACAAAGA
AAAAGAAAGCGCAAAGAGCTAAAGGAGGAGGCAGTCTCTGTCATTTCTCTTTGTATATAATACC
TTCACCTTCCTGCCTCCTCTCGCTTCTCCCGTCCCTTTCCATCCTAAACATATCCATAAAAATG
ATGTGCTTATCAA

hide sequence

RefSeq Acc Id:

XM_039078942 ⟹ XP_038934870

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	134,333,165 - 134,375,049 (-)	NCBI

RefSeq Acc Id:

XM_039078943 ⟹ XP_038934871

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	134,333,165 - 134,350,639 (-)	NCBI

RefSeq Acc Id:

XM_039078944 ⟹ XP_038934872

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	134,333,165 - 134,376,102 (-)	NCBI

RefSeq Acc Id:

XM_039078946 ⟹ XP_038934874

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	134,333,165 - 134,374,011 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100267	(Get FASTA)	NCBI Sequence Viewer
	XP_006242453	(Get FASTA)	NCBI Sequence Viewer
	XP_006242455	(Get FASTA)	NCBI Sequence Viewer
	XP_008763929	(Get FASTA)	NCBI Sequence Viewer
	XP_017450282	(Get FASTA)	NCBI Sequence Viewer
	XP_038934870	(Get FASTA)	NCBI Sequence Viewer
	XP_038934871	(Get FASTA)	NCBI Sequence Viewer
	XP_038934872	(Get FASTA)	NCBI Sequence Viewer
	XP_038934874	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66908	(Get FASTA)	NCBI Sequence Viewer
	AAI68739	(Get FASTA)	NCBI Sequence Viewer
	EDL86794	(Get FASTA)	NCBI Sequence Viewer
	EDL86795	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001100267 ⟸ NM_001106797
- UniProtKB:	B2RYU7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKKTKRTADSSSSEDEEEYVVEKVLDRRMVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELIS EFMKKYKKMKEGENNKPREKSEGNKRKSSFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIG ATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKESAKS hide sequence

RefSeq Acc Id:	XP_006242455 ⟸ XM_006242393
- Peptide Label:	isoform X1
- UniProtKB:	B2RYU7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKKTKRTADSSSSEDEEEYVVEKVLDRRMVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELIS EFMKKYKKMKEGENNKPREKSEGNKRKSSFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIG ATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKESAKS hide sequence

RefSeq Acc Id:	XP_006242453 ⟸ XM_006242391
- Peptide Label:	isoform X1
- UniProtKB:	B2RYU7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKKTKRTADSSSSEDEEEYVVEKVLDRRMVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELIS EFMKKYKKMKEGENNKPREKSEGNKRKSSFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIG ATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKESAKS hide sequence

RefSeq Acc Id:	XP_008763929 ⟸ XM_008765707
- Peptide Label:	isoform X1
- UniProtKB:	B2RYU7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKKTKRTADSSSSEDEEEYVVEKVLDRRMVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELIS EFMKKYKKMKEGENNKPREKSEGNKRKSSFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIG ATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKESAKS hide sequence

RefSeq Acc Id:	XP_017450282 ⟸ XM_017594793
- Peptide Label:	isoform X1
- UniProtKB:	B2RYU7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKKTKRTADSSSSEDEEEYVVEKVLDRRMVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELIS EFMKKYKKMKEGENNKPREKSEGNKRKSSFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIG ATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKESAKS hide sequence

RefSeq Acc Id:

ENSRNOP00000052163 ⟸ ENSRNOT00000055289

RefSeq Acc Id:

ENSRNOP00000073453 ⟸ ENSRNOT00000089024

RefSeq Acc Id:	XP_038934872 ⟸ XM_039078944
- Peptide Label:	isoform X1
- UniProtKB:	B2RYU7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934870 ⟸ XM_039078942
- Peptide Label:	isoform X1
- UniProtKB:	B2RYU7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934874 ⟸ XM_039078946
- Peptide Label:	isoform X1
- UniProtKB:	B2RYU7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934871 ⟸ XM_039078943
- Peptide Label:	isoform X1
- UniProtKB:	B2RYU7 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000087859 ⟸ ENSRNOT00000120168

Protein Domains

Chromo

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2RYU7-F1-model_v2	AlphaFold	B2RYU7	1-191	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695722

Promoter ID:

EPDNEW_R6236

Type:

single initiation site

Name:

Cbx5_1

Description:

chromobox 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R6237

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	144,837,410 - 144,837,470	EPDNEW

RGD ID:

13695713

Promoter ID:

EPDNEW_R6237

Type:

multiple initiation site

Name:

Cbx5_2

Description:

chromobox 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R6236

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	144,837,597 - 144,837,657	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306619	AgrOrtholog
BioCyc Gene	G2FUF-31885	BioCyc
Ensembl Genes	ENSRNOG00000036841	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000052163	ENTREZGENE
	ENSRNOP00000052163.2	UniProtKB/TrEMBL
	ENSRNOP00000073453	ENTREZGENE
	ENSRNOP00000073453.2	UniProtKB/TrEMBL
	ENSRNOP00000087859	ENTREZGENE
	ENSRNOP00000087859.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000055289	ENTREZGENE
	ENSRNOT00000055289.3	UniProtKB/TrEMBL
	ENSRNOT00000089024	ENTREZGENE
	ENSRNOT00000089024.2	UniProtKB/TrEMBL
	ENSRNOT00000120168	ENTREZGENE
	ENSRNOT00000120168.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.50.40	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:6889335	IMAGE-MGC_LOAD
InterPro	Chromo_dom_subgr	UniProtKB/TrEMBL
	Chromo_domain	UniProtKB/TrEMBL
	Chromo_shadow	UniProtKB/TrEMBL
	Chromodomain	UniProtKB/TrEMBL
	Chromodomain-like	UniProtKB/TrEMBL
	Chromodomain_CS	UniProtKB/TrEMBL
KEGG Report	rno:300266	UniProtKB/TrEMBL
MGC_CLONE	MGC:188878	IMAGE-MGC_LOAD
NCBI Gene	300266	ENTREZGENE
PANTHER	CHROMOBOX PROTEIN	UniProtKB/TrEMBL
	CHROMOBOX PROTEIN HOMOLOG 5	UniProtKB/TrEMBL
Pfam	Chromo	UniProtKB/TrEMBL
	Chromo_shadow	UniProtKB/TrEMBL
PhenoGen	Cbx5	PhenoGen
PRINTS	CHROMODOMAIN	UniProtKB/TrEMBL
PROSITE	CHROMO_1	UniProtKB/TrEMBL
	CHROMO_2	UniProtKB/TrEMBL
SMART	CHROMO	UniProtKB/TrEMBL
	ChSh	UniProtKB/TrEMBL
Superfamily-SCOP	Chromodomain-like	UniProtKB/TrEMBL
UniProt	A0A0G2K5J8_RAT	UniProtKB/TrEMBL
	A0A8I6A5A0_RAT	UniProtKB/TrEMBL
	B2RYU7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-02	Cbx5	chromobox 5	Cbx5	chromobox homolog 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-07-29	Cbx5	chromobox homolog 5	Cbx5	chromobox homolog 5 (HP1 alpha homolog, Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-18	Cbx5	chromobox homolog 5 (HP1 alpha homolog, Drosophila)	Cbx5	chromobox homolog 5 (Drosophila HP1a)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Cbx5	chromobox homolog 5 (Drosophila HP1a)	Cbx5_predicted	chromobox homolog 5 (Drosophila HP1a) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Cbx5_predicted	chromobox homolog 5 (Drosophila HP1a) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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