Gene: Scx (scleraxis bHLH transcription factor) Rattus norvegicus
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Symbol: Scx
Name: scleraxis bHLH transcription factor
Description: Predicted to have several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific, bHLH transcription factor binding activity, and nucleic acid binding activity; predicted to be involved in several processes, including animal organ development, cellular response to growth factor stimulus, and regulation of cellular biosynthetic process; predicted to localize to the nucleus and transcription factor complex; orthologous to human SCX (scleraxis bHLH transcription factor); INTERACTS WITH 6-propyl-2-thiouracil; bis(2-ethylhexyl) phthalate; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: basic helix-loop-helix transcription factor scleraxis; LOC680712; MGC189419; scleraxis; scleraxis basic helix-loop-helix transcription factor; similar to Basic helix-loop-helix transcription factor scleraxis
Orthologs:
Homo sapiens (human) : SCX (scleraxis bHLH transcription factor)  HGNC  Alliance
Mus musculus (house mouse) : Scx (scleraxis)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Scx (scleraxis bHLH transcription factor)
Pan paniscus (bonobo/pygmy chimpanzee) : SCX (scleraxis bHLH transcription factor)
Canis lupus familiaris (dog) : SCX (scleraxis bHLH transcription factor)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Scx (scleraxis bHLH transcription factor)
Sus scrofa (pig) : SCX (scleraxis bHLH transcription factor)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07117,519,075 - 117,521,093 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07117,506,706 - 117,508,724 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,504,701 - 114,506,719 (+)NCBIRGSC3.4rn4RGSC3.4
Celera7104,528,235 - 104,530,253 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Scx
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1588254
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.