Scx (scleraxis bHLH transcription factor) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Scx (scleraxis bHLH transcription factor) Chinchilla lanigera
Analyze
Symbol: Scx
Name: scleraxis bHLH transcription factor
RGD ID: 8750663
Description: ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN BMP signaling pathway (ortholog); cell differentiation (ortholog); cellular response to BMP stimulus (ortholog); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); FOUND IN nucleus (ortholog); transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: basic helix-loop-helix transcription factor scleraxis
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554542,886,981 - 2,888,829 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554542,886,981 - 2,888,829 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References


Genomics

Comparative Map Data
Scx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554542,886,981 - 2,888,829 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554542,886,981 - 2,888,829 (+)NCBIChiLan1.0ChiLan1.0
SCX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl8144,266,453 - 144,268,481 (+)EnsemblGRCh38hg38GRCh38
GRCh388144,265,060 - 144,268,483 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh378145,321,356 - 145,323,384 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368145,393,505 - 145,395,033 (+)NCBINCBI36hg18NCBI36
Celera8141,665,524 - 141,666,939 (+)NCBI
Cytogenetic Map8q24.3NCBI
HuRef8140,605,530 - 140,607,095 (+)NCBIHuRef
CHM1_18145,595,226 - 145,596,688 (+)NCBICHM1_1
Scx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,341,594 - 76,343,668 (+)NCBIGRCm39mm39
GRCm39 Ensembl1576,341,652 - 76,343,658 (+)Ensembl
GRCm381576,457,411 - 76,459,468 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,457,452 - 76,459,458 (+)EnsemblGRCm38mm10GRCm38
MGSCv371576,287,868 - 76,289,898 (+)NCBIGRCm37mm9NCBIm37
MGSCv361576,284,693 - 76,286,716 (+)NCBImm8
Celera1577,957,869 - 77,959,899 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1535.92NCBI
Scx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27108,176,608 - 108,178,626 (+)NCBI
Rnor_6.0 Ensembl7117,519,075 - 117,521,093 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.07117,519,075 - 117,521,093 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07117,506,706 - 117,508,724 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,504,701 - 114,506,719 (+)NCBIRGSC3.4rn4RGSC3.4
Celera7104,528,235 - 104,530,253 (+)NCBICelera
Cytogenetic Map7q34NCBI
SCX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.18144,018,463 - 144,021,487 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v08141,027,765 - 141,031,194 (+)NCBIMhudiblu_PPA_v0panPan3
SCX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,701,781 - 37,704,949 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,703,232 - 37,704,657 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,665,396 - 37,668,564 (+)NCBI
ROS_Cfam_1.01338,178,072 - 38,181,239 (+)NCBI
UMICH_Zoey_3.11337,850,219 - 37,853,385 (+)NCBI
UNSW_CanFamBas_1.01337,978,828 - 37,981,997 (+)NCBI
UU_Cfam_GSD_1.01338,455,164 - 38,458,331 (+)NCBI
Scx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364707,966,096 - 7,972,379 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4501,172 - 502,994 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14500,884 - 503,276 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SCX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,476,902 - 138,482,185 (+)NCBI
ChlSab1.1 Ensembl8138,478,458 - 138,480,459 (+)Ensembl
Vero_WHO_p1.0NW_0236660391,384,906 - 1,388,296 (-)NCBI
Scx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473512,579,963 - 12,583,128 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000018481   ⟹   ENSCLAP00000018302
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554542,886,981 - 2,888,829 (+)Ensembl
RefSeq Acc Id: XM_013520103   ⟹   XP_013375557
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554542,886,981 - 2,888,829 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013375557 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013375557   ⟸   XM_013520103
- Sequence:
RefSeq Acc Id: ENSCLAP00000018302   ⟸   ENSCLAT00000018481


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012546 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000018302 ENTREZGENE
Ensembl Transcript ENSCLAT00000018481 ENTREZGENE
NCBI Gene LOC102018058 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Scx  scleraxis bHLH transcription factor  LOC102018058  basic helix-loop-helix transcription factor scleraxis-like  Symbol and/or name change 5135510 APPROVED