Phf20l1 (PHD finger protein 20-like 1) - Rat Genome Database

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Gene: Phf20l1 (PHD finger protein 20-like 1) Rattus norvegicus
Analyze
Symbol: Phf20l1
Name: PHD finger protein 20-like 1
RGD ID: 1560141
Description: Predicted to enable methylation-dependent protein binding activity. Predicted to be involved in negative regulation of proteasomal ubiquitin-dependent protein catabolic process and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of NSL complex. Orthologous to human PHF20L1 (PHD finger protein 20 like 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC314964; MGC112686; PHD finger protein 20-like protein 1; similar to PHD finger protein 20-like 1 isoform 1; tudor domain-containing protein PHF20L1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87100,219,598 - 100,285,580 (+)NCBIGRCr8
mRatBN7.2798,330,580 - 98,396,526 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl798,330,580 - 98,396,526 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7100,091,172 - 100,157,051 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07102,292,828 - 102,358,712 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07102,212,176 - 102,278,059 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07108,613,731 - 108,759,741 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.07107,406,948 - 107,445,219 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7107,406,962 - 107,442,513 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl7108,613,739 - 108,756,747 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07108,561,690 - 108,702,689 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.07107,345,695 - 107,377,124 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47103,945,838 - 103,976,140 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera794,883,054 - 94,948,977 (+)NCBICelera
Cytogenetic Map7q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
amiodarone  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
chrysene  (ISO)
cobalt dichloride  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
entinostat  (ISO)
ethyl methanesulfonate  (ISO)
fipronil  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
indometacin  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nimesulide  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium dichromate  (EXP)
succimer  (ISO)
tetraphene  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
toluene  (EXP)
trichostatin A  (ISO)
troglitazone  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
NSL complex  (IBA,IEA)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Phf20l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87100,219,598 - 100,285,580 (+)NCBIGRCr8
mRatBN7.2798,330,580 - 98,396,526 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl798,330,580 - 98,396,526 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7100,091,172 - 100,157,051 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07102,292,828 - 102,358,712 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07102,212,176 - 102,278,059 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07108,613,731 - 108,759,741 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.07107,406,948 - 107,445,219 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7107,406,962 - 107,442,513 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl7108,613,739 - 108,756,747 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07108,561,690 - 108,702,689 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.07107,345,695 - 107,377,124 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47103,945,838 - 103,976,140 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera794,883,054 - 94,948,977 (+)NCBICelera
Cytogenetic Map7q33NCBI
PHF20L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388132,775,388 - 132,848,807 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8132,775,358 - 132,848,807 (+)EnsemblGRCh38hg38GRCh38
GRCh378133,787,634 - 133,861,052 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368133,856,786 - 133,930,234 (+)NCBINCBI36Build 36hg18NCBI36
Celera8129,963,424 - 130,036,873 (+)NCBICelera
Cytogenetic Map8q24.22NCBI
HuRef8129,105,970 - 129,179,737 (+)NCBIHuRef
CHM1_18133,828,260 - 133,901,705 (+)NCBICHM1_1
T2T-CHM13v2.08133,898,574 - 133,971,990 (+)NCBIT2T-CHM13v2.0
Phf20l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391566,449,354 - 66,519,821 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1566,449,409 - 66,519,825 (+)EnsemblGRCm39 Ensembl
GRCm381566,577,500 - 66,647,043 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1566,577,560 - 66,647,976 (+)EnsemblGRCm38mm10GRCm38
MGSCv371566,409,134 - 66,476,817 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361566,407,229 - 66,474,924 (+)NCBIMGSCv36mm8
Celera1568,109,460 - 68,177,172 (+)NCBICelera
Cytogenetic Map15D1- D2NCBI
cM Map1529.3NCBI
Phf20l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554617,391,175 - 7,465,012 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554617,391,175 - 7,465,012 (+)NCBIChiLan1.0ChiLan1.0
PHF20L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27150,161,464 - 150,235,987 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18125,676,073 - 125,750,575 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08129,427,157 - 129,500,633 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18132,403,053 - 132,477,338 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8132,403,053 - 132,474,452 (+)Ensemblpanpan1.1panPan2
PHF20L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11329,260,381 - 29,338,345 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1329,260,373 - 29,336,623 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1329,233,299 - 29,311,273 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01329,615,091 - 29,693,214 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1329,615,088 - 29,693,145 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11329,341,760 - 29,419,748 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01329,442,157 - 29,520,162 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01329,754,137 - 29,832,180 (+)NCBIUU_Cfam_GSD_1.0
Phf20l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053038,980,523 - 9,049,549 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647016,406,653 - 16,475,586 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647016,406,293 - 16,475,384 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHF20L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl48,394,897 - 8,468,297 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.148,394,874 - 8,468,309 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.248,437,176 - 8,510,591 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHF20L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18127,201,612 - 127,275,378 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8127,201,658 - 127,272,501 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603912,830,762 - 12,906,089 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phf20l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473523,101,075 - 23,171,145 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473523,101,075 - 23,171,195 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Phf20l1
157 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:179
Count of miRNA genes:116
Interacting mature miRNAs:152
Transcripts:ENSRNOT00000007564, ENSRNOT00000007587
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)793595647106839474Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
10450828Scl79Serum cholesterol level QTL 793.50.001blood HDL cholesterol amount (VT:0000184)blood low density lipoprotein cholesterol level (CMO:0000053)789867376101773158Rat

Markers in Region
D7Rat134  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2798,418,639 - 98,418,864 (+)MAPPERmRatBN7.2
Rnor_6.07107,467,607 - 107,467,831NCBIRnor6.0
Rnor_6.07108,722,908 - 108,723,132NCBIRnor6.0
Rnor_5.07107,399,512 - 107,399,736UniSTSRnor5.0
Rnor_5.07108,666,690 - 108,666,914UniSTSRnor5.0
RGSC_v3.47104,036,107 - 104,036,364RGDRGSC3.4
RGSC_v3.47104,036,123 - 104,036,347UniSTSRGSC3.4
RGSC_v3.17104,070,353 - 104,070,577RGD
Celera794,971,092 - 94,971,314UniSTS
RH 3.4 Map7679.4UniSTS
RH 3.4 Map7679.4RGD
RH 2.0 Map7528.0RGD
SHRSP x BN Map758.0RGD
Cytogenetic Map7q33UniSTS
RH130203  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2798,393,786 - 98,393,989 (+)MAPPERmRatBN7.2
Rnor_6.07107,442,378 - 107,442,580NCBIRnor6.0
Rnor_5.07107,374,283 - 107,374,485UniSTSRnor5.0
RGSC_v3.47104,011,267 - 104,011,469UniSTSRGSC3.4
Celera794,946,238 - 94,946,440UniSTS
RH 3.4 Map7679.4UniSTS
Cytogenetic Map7q33UniSTS
RH130693  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2798,361,151 - 98,361,368 (+)MAPPERmRatBN7.2
Rnor_6.07108,757,235 - 108,757,451NCBIRnor6.0
Rnor_5.07108,700,704 - 108,700,920UniSTSRnor5.0
RGSC_v3.47103,976,635 - 103,976,851UniSTSRGSC3.4
Celera794,913,626 - 94,913,842UniSTS
RH 3.4 Map7678.2UniSTS
Cytogenetic Map7q33UniSTS
RH132975  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2798,396,152 - 98,396,350 (+)MAPPERmRatBN7.2
Rnor_6.07107,444,846 - 107,445,043NCBIRnor6.0
Rnor_5.07107,376,751 - 107,376,948UniSTSRnor5.0
RGSC_v3.47104,013,634 - 104,013,831UniSTSRGSC3.4
Celera794,948,604 - 94,948,801UniSTS
RH 3.4 Map7679.4UniSTS
Cytogenetic Map7q33UniSTS
AI030939  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2798,394,319 - 98,394,420 (+)MAPPERmRatBN7.2
Rnor_6.07107,442,911 - 107,443,011NCBIRnor6.0
Rnor_5.07107,374,816 - 107,374,916UniSTSRnor5.0
RGSC_v3.47104,011,800 - 104,011,900UniSTSRGSC3.4
Celera794,946,771 - 94,946,871UniSTS
RH 3.4 Map7675.7UniSTS
Cytogenetic Map7q33UniSTS
AW533271  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2798,374,330 - 98,374,550 (+)MAPPERmRatBN7.2
Rnor_6.07107,422,913 - 107,423,132NCBIRnor6.0
Rnor_5.07107,354,818 - 107,355,037UniSTSRnor5.0
RGSC_v3.47103,991,862 - 103,992,081UniSTSRGSC3.4
Celera794,926,778 - 94,926,997UniSTS
RH 3.4 Map7679.5UniSTS
Cytogenetic Map7q33UniSTS
RH138548  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.07108,563,285 - 108,563,397NCBIRnor5.0
RGSC_v3.47103,947,248 - 103,947,401UniSTSRGSC3.4
Celera794,884,680 - 94,884,833UniSTS
RH 3.4 Map7678.2UniSTS
Cytogenetic Map7q33UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 78 65 35 37 35 15 18 146 63 73 22 15
Low 3 7 47 47 47 3 7 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001271439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005486634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005486636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC096896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000007564   ⟹   ENSRNOP00000007564
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7108,613,739 - 108,756,747 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000007587   ⟹   ENSRNOP00000007587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7107,413,691 - 107,414,390 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093254   ⟹   ENSRNOP00000076201
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl798,330,580 - 98,396,526 (+)Ensembl
Rnor_6.0 Ensembl7107,406,962 - 107,442,513 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095136   ⟹   ENSRNOP00000086359
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl798,330,580 - 98,396,526 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106420   ⟹   ENSRNOP00000088843
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl798,330,580 - 98,396,526 (+)Ensembl
RefSeq Acc Id: NM_001271439   ⟹   NP_001258368
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,639 - 100,285,580 (+)NCBI
mRatBN7.2798,330,580 - 98,396,526 (+)NCBI
Rnor_6.07107,406,948 - 107,445,219 (+)NCBI
Rnor_5.07107,345,695 - 107,377,124 (+)NCBI
Rnor_5.07108,561,690 - 108,702,689 (+)NCBI
Celera794,883,054 - 94,948,977 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039079186   ⟹   XP_038935114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,783 - 100,285,406 (+)NCBI
mRatBN7.2798,330,724 - 98,396,352 (+)NCBI
RefSeq Acc Id: XM_039079187   ⟹   XP_038935115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,781 - 100,285,406 (+)NCBI
mRatBN7.2798,330,721 - 98,396,352 (+)NCBI
RefSeq Acc Id: XM_039079188   ⟹   XP_038935116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,598 - 100,285,406 (+)NCBI
mRatBN7.2798,330,588 - 98,396,352 (+)NCBI
RefSeq Acc Id: XM_039079189   ⟹   XP_038935117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,783 - 100,285,406 (+)NCBI
mRatBN7.2798,330,724 - 98,396,352 (+)NCBI
RefSeq Acc Id: XM_039079190   ⟹   XP_038935118
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,783 - 100,285,406 (+)NCBI
mRatBN7.2798,330,724 - 98,396,352 (+)NCBI
RefSeq Acc Id: XM_039079191   ⟹   XP_038935119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,783 - 100,285,406 (+)NCBI
mRatBN7.2798,330,724 - 98,396,352 (+)NCBI
RefSeq Acc Id: XM_039079192   ⟹   XP_038935120
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,783 - 100,285,406 (+)NCBI
mRatBN7.2798,330,724 - 98,396,352 (+)NCBI
RefSeq Acc Id: XM_039079193   ⟹   XP_038935121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,783 - 100,285,406 (+)NCBI
mRatBN7.2798,330,724 - 98,396,352 (+)NCBI
RefSeq Acc Id: XM_039079194   ⟹   XP_038935122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,783 - 100,285,406 (+)NCBI
mRatBN7.2798,330,724 - 98,396,352 (+)NCBI
RefSeq Acc Id: XM_039079195   ⟹   XP_038935123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,234,349 - 100,285,406 (+)NCBI
mRatBN7.2798,345,291 - 98,396,352 (+)NCBI
RefSeq Acc Id: XM_039079196   ⟹   XP_038935124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,234,349 - 100,285,406 (+)NCBI
mRatBN7.2798,345,291 - 98,396,352 (+)NCBI
RefSeq Acc Id: XM_039079197   ⟹   XP_038935125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,234,349 - 100,285,406 (+)NCBI
mRatBN7.2798,345,291 - 98,396,352 (+)NCBI
RefSeq Acc Id: XM_039079198   ⟹   XP_038935126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,783 - 100,274,098 (+)NCBI
mRatBN7.2798,330,724 - 98,384,985 (+)NCBI
RefSeq Acc Id: XM_039079199   ⟹   XP_038935127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,783 - 100,272,053 (+)NCBI
mRatBN7.2798,330,724 - 98,383,000 (+)NCBI
RefSeq Acc Id: XM_039079200   ⟹   XP_038935128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,783 - 100,267,509 (+)NCBI
mRatBN7.2798,330,724 - 98,379,424 (+)NCBI
RefSeq Acc Id: XM_039079201   ⟹   XP_038935129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,248,495 - 100,285,406 (+)NCBI
mRatBN7.2798,359,418 - 98,396,352 (+)NCBI
RefSeq Acc Id: XM_039079202   ⟹   XP_038935130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,783 - 100,263,560 (+)NCBI
mRatBN7.2798,330,724 - 98,374,383 (+)NCBI
RefSeq Acc Id: XM_063263538   ⟹   XP_063119608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,783 - 100,285,406 (+)NCBI
RefSeq Acc Id: XM_063263539   ⟹   XP_063119609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,781 - 100,285,406 (+)NCBI
RefSeq Acc Id: XM_063263540   ⟹   XP_063119610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,598 - 100,285,406 (+)NCBI
RefSeq Acc Id: XM_063263541   ⟹   XP_063119611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,781 - 100,285,406 (+)NCBI
RefSeq Acc Id: XM_063263542   ⟹   XP_063119612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,598 - 100,285,406 (+)NCBI
RefSeq Acc Id: XM_063263544   ⟹   XP_063119614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,781 - 100,285,406 (+)NCBI
RefSeq Acc Id: XM_063263545   ⟹   XP_063119615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,598 - 100,285,406 (+)NCBI
RefSeq Acc Id: XM_063263546   ⟹   XP_063119616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,783 - 100,285,406 (+)NCBI
RefSeq Acc Id: XM_063263547   ⟹   XP_063119617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,781 - 100,285,406 (+)NCBI
RefSeq Acc Id: XM_063263548   ⟹   XP_063119618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,598 - 100,285,406 (+)NCBI
RefSeq Acc Id: XM_063263549   ⟹   XP_063119619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,783 - 100,285,406 (+)NCBI
RefSeq Acc Id: XM_063263551   ⟹   XP_063119621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,598 - 100,250,548 (+)NCBI
RefSeq Acc Id: XM_063263552   ⟹   XP_063119622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,783 - 100,250,548 (+)NCBI
RefSeq Acc Id: XM_063263553   ⟹   XP_063119623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,598 - 100,250,548 (+)NCBI
RefSeq Acc Id: XM_063263554   ⟹   XP_063119624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,598 - 100,250,548 (+)NCBI
RefSeq Acc Id: XR_005486634
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,783 - 100,274,098 (+)NCBI
mRatBN7.2798,330,724 - 98,384,986 (+)NCBI
RefSeq Acc Id: XR_005486636
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,219,783 - 100,268,522 (+)NCBI
mRatBN7.2798,330,724 - 98,374,610 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001258368 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935114 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935115 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935116 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935117 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935118 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935119 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935120 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935121 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935122 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935123 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935124 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935125 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935126 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935127 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935128 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935129 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935130 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119608 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119609 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119610 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119611 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119612 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119614 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119615 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119616 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119617 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119618 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119619 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119621 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119622 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119623 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119624 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH96896 (Get FASTA)   NCBI Sequence Viewer  
  EDM16157 (Get FASTA)   NCBI Sequence Viewer  
  EDM16158 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000076201
  ENSRNOP00000076201.2
  ENSRNOP00000086359
  ENSRNOP00000086359.1
  ENSRNOP00000088843.1
GenBank Protein Q4V9H5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001258368   ⟸   NM_001271439
- UniProtKB: Q4V9H5 (UniProtKB/Swiss-Prot),   A6HRR4 (UniProtKB/TrEMBL),   A0A8I6A3M7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000007587   ⟸   ENSRNOT00000007587
RefSeq Acc Id: ENSRNOP00000007564   ⟸   ENSRNOT00000007564
RefSeq Acc Id: ENSRNOP00000076201   ⟸   ENSRNOT00000093254
RefSeq Acc Id: XP_038935116   ⟸   XM_039079188
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A3M7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935115   ⟸   XM_039079187
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A3M7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935114   ⟸   XM_039079186
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A3M7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935117   ⟸   XM_039079189
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A3M7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935118   ⟸   XM_039079190
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A3M7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935119   ⟸   XM_039079191
- Peptide Label: isoform X5
- UniProtKB: A0A8I6A3M7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935120   ⟸   XM_039079192
- Peptide Label: isoform X6
- UniProtKB: A0A8I6A3M7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935121   ⟸   XM_039079193
- Peptide Label: isoform X7
- UniProtKB: A0A1W2Q6A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935122   ⟸   XM_039079194
- Peptide Label: isoform X10
- UniProtKB: A0A1W2Q6A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935126   ⟸   XM_039079198
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038935127   ⟸   XM_039079199
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038935128   ⟸   XM_039079200
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038935130   ⟸   XM_039079202
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038935123   ⟸   XM_039079195
- Peptide Label: isoform X11
- UniProtKB: A0A8I6A3M7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935124   ⟸   XM_039079196
- Peptide Label: isoform X12
- UniProtKB: A0A8I6A3M7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935125   ⟸   XM_039079197
- Peptide Label: isoform X13
- UniProtKB: A0A1W2Q6A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935129   ⟸   XM_039079201
- Peptide Label: isoform X17
RefSeq Acc Id: ENSRNOP00000086359   ⟸   ENSRNOT00000095136
RefSeq Acc Id: ENSRNOP00000088843   ⟸   ENSRNOT00000106420
RefSeq Acc Id: XP_063119610   ⟸   XM_063263540
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063119612   ⟸   XM_063263542
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063119615   ⟸   XM_063263545
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063119618   ⟸   XM_063263548
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063119621   ⟸   XM_063263551
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063119623   ⟸   XM_063263553
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063119624   ⟸   XM_063263554
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063119609   ⟸   XM_063263539
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063119611   ⟸   XM_063263541
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063119614   ⟸   XM_063263544
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063119617   ⟸   XM_063263547
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063119608   ⟸   XM_063263538
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063119616   ⟸   XM_063263546
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063119619   ⟸   XM_063263549
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063119622   ⟸   XM_063263552
- Peptide Label: isoform X20
Protein Domains
Agenet   Tudor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4V9H5-F1-model_v2 AlphaFold Q4V9H5 1-1015 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560141 AgrOrtholog
BioCyc Gene G2FUF-33123 BioCyc
Ensembl Genes ENSRNOG00000005486 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000046527 Ensembl
Ensembl Transcript ENSRNOT00000093254 ENTREZGENE
  ENSRNOT00000093254.2 UniProtKB/TrEMBL
  ENSRNOT00000095136 ENTREZGENE
  ENSRNOT00000095136.1 UniProtKB/TrEMBL
  ENSRNOT00000106420.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Agenet_dom_plant UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KDM4_Tudor_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHF20-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor_PHF20L1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:314964 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 314964 ENTREZGENE
PANTHER PHD FINGER PROTEIN 20-LIKE PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15856 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PHD20L1_u1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHD_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Phf20l1 PhenoGen
PROSITE ZF_PHD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005486 RatGTEx
  ENSRNOG00000046527 RatGTEx
SMART Agenet UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1W2Q6A4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A3M7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A6Z4_RAT UniProtKB/TrEMBL
  A6HRR4 ENTREZGENE, UniProtKB/TrEMBL
  P20L1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Phf20l1  PHD finger protein 20-like 1  LOC314964  similar to PHD finger protein 20-like 1 isoform 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC314964  similar to PHD finger protein 20-like 1 isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL