Gga1 (golgi associated, gamma adaptin ear containing, ARF binding protein 1) - Rat Genome Database

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Gene: Gga1 (golgi associated, gamma adaptin ear containing, ARF binding protein 1) Rattus norvegicus
Analyze
Symbol: Gga1
Name: golgi associated, gamma adaptin ear containing, ARF binding protein 1
RGD ID: 1307770
Description: Predicted to enable small GTPase binding activity. Predicted to be involved in several processes, including protein localization to cell periphery; protein localization to cell surface; and retrograde transport, endosome to Golgi. Predicted to act upstream of or within positive regulation of protein catabolic process and toxin transport. Predicted to be located in Golgi apparatus; early endosome; and nucleoplasm. Predicted to be part of protein-containing complex. Predicted to be active in trans-Golgi network. Orthologous to human GGA1 (golgi associated, gamma adaptin ear containing, ARF binding protein 1); INTERACTS WITH 17beta-estradiol; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ADP-ribosylation factor-binding protein GGA1; LOC300066; MGC109601
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27110,435,715 - 110,451,790 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl7110,435,062 - 110,451,789 (+)Ensembl
Rnor_6.07120,102,596 - 120,119,738 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,106,901 - 120,119,737 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,095,184 - 120,111,259 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47116,847,192 - 116,860,029 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17116,881,421 - 116,894,258 (+)NCBI
Celera7106,773,124 - 106,785,961 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12668765   PMID:12679809   PMID:12767220   PMID:15886016   PMID:19946888   PMID:22306374   PMID:22836275   PMID:23716698   PMID:25405894   PMID:27901063  


Genomics

Comparative Map Data
Gga1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27110,435,715 - 110,451,790 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl7110,435,062 - 110,451,789 (+)Ensembl
Rnor_6.07120,102,596 - 120,119,738 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,106,901 - 120,119,737 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,095,184 - 120,111,259 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47116,847,192 - 116,860,029 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17116,881,421 - 116,894,258 (+)NCBI
Celera7106,773,124 - 106,785,961 (+)NCBICelera
Cytogenetic Map7q34NCBI
GGA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,608,834 - 37,633,564 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2237,608,725 - 37,633,564 (+)EnsemblGRCh38hg38GRCh38
GRCh372238,004,841 - 38,029,571 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362236,334,449 - 36,359,517 (+)NCBINCBI36hg18NCBI36
Build 342236,329,002 - 36,354,070NCBI
Celera2221,806,338 - 21,831,428 (+)NCBI
Cytogenetic Map22q13.1NCBI
HuRef2220,971,795 - 20,996,697 (+)NCBIHuRef
CHM1_12237,963,216 - 37,988,316 (+)NCBICHM1_1
T2T-CHM13v2.02238,070,114 - 38,094,844 (+)NCBI
Gga1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,761,069 - 78,778,785 (+)NCBIGRCm39mm39
GRCm39 Ensembl1578,761,390 - 78,778,785 (+)Ensembl
GRCm381578,877,167 - 78,894,585 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,877,190 - 78,894,585 (+)EnsemblGRCm38mm10GRCm38
MGSCv371578,707,620 - 78,725,015 (+)NCBIGRCm37mm9NCBIm37
MGSCv361579,600,963 - 79,618,720 (+)NCBImm8
MGSCv361578,704,445 - 78,721,843 (+)NCBImm8
Cytogenetic Map15E1NCBI
Gga1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,018,595 - 24,037,887 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,018,595 - 24,037,887 (+)NCBIChiLan1.0ChiLan1.0
GGA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12236,359,708 - 36,384,707 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2236,359,744 - 36,384,707 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02218,526,456 - 18,551,640 (+)NCBIMhudiblu_PPA_v0panPan3
GGA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11026,972,763 - 26,991,772 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1026,972,760 - 26,991,689 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1026,927,389 - 26,946,401 (-)NCBI
ROS_Cfam_1.01027,764,663 - 27,783,673 (-)NCBI
ROS_Cfam_1.0 Ensembl1027,764,675 - 27,783,586 (-)Ensembl
UMICH_Zoey_3.11027,486,872 - 27,505,872 (-)NCBI
UNSW_CanFamBas_1.01027,795,467 - 27,814,477 (-)NCBI
UU_Cfam_GSD_1.01027,973,010 - 27,992,020 (-)NCBI
Gga1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,434,859 - 10,454,368 (-)NCBI
SpeTri2.0NW_0049364923,445,271 - 3,464,960 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GGA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,190,367 - 10,213,477 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1510,186,132 - 10,213,830 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.257,748,322 - 7,919,710 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GGA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11920,307,312 - 20,334,656 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1920,307,144 - 20,334,682 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045105,488,532 - 105,515,515 (-)NCBIVero_WHO_p1.0
Gga1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475210,270,241 - 10,289,129 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462475210,267,501 - 10,289,093 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
AU016030  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27110,451,512 - 110,451,686 (+)MAPPERmRatBN7.2
Rnor_6.07120,119,461 - 120,119,634NCBIRnor6.0
Rnor_5.07120,110,982 - 120,111,155UniSTSRnor5.0
RGSC_v3.47116,859,752 - 116,859,925UniSTSRGSC3.4
Celera7106,785,684 - 106,785,857UniSTS
Cytogenetic Map7q34UniSTS
RH129088  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27110,451,607 - 110,451,759 (+)MAPPERmRatBN7.2
Rnor_6.07120,119,556 - 120,119,707NCBIRnor6.0
Rnor_5.07120,111,077 - 120,111,228UniSTSRnor5.0
RGSC_v3.47116,859,847 - 116,859,998UniSTSRGSC3.4
Celera7106,785,779 - 106,785,930UniSTS
Cytogenetic Map7q34UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:460
Count of miRNA genes:231
Interacting mature miRNAs:279
Transcripts:ENSRNOT00000063876
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 49 33 19 33 3 67 35 41 11
Low 8 8 8 8 8 8 7 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000063876   ⟹   ENSRNOP00000059486
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7110,435,062 - 110,451,789 (+)Ensembl
Rnor_6.0 Ensembl7120,106,901 - 120,119,737 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098550   ⟹   ENSRNOP00000096170
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7110,436,064 - 110,451,788 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113842   ⟹   ENSRNOP00000086095
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7110,440,078 - 110,451,789 (+)Ensembl
RefSeq Acc Id: NM_001011994   ⟹   NP_001011994
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27110,438,953 - 110,451,790 (+)NCBI
Rnor_6.07120,106,901 - 120,119,738 (+)NCBI
Rnor_5.07120,095,184 - 120,111,259 (+)NCBI
RGSC_v3.47116,847,192 - 116,860,029 (+)RGD
Celera7106,773,124 - 106,785,961 (+)RGD
Sequence:
RefSeq Acc Id: XM_008765679   ⟹   XP_008763901
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27110,435,715 - 110,451,790 (+)NCBI
Rnor_6.07120,102,596 - 120,119,738 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001011994 (Get FASTA)   NCBI Sequence Viewer  
  NP_001386663 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763901 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH90031 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001011994   ⟸   NM_001011994
- UniProtKB: Q5FVF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763901   ⟸   XM_008765679
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000059486   ⟸   ENSRNOT00000063876
RefSeq Acc Id: ENSRNOP00000086095   ⟸   ENSRNOT00000113842
RefSeq Acc Id: ENSRNOP00000096170   ⟸   ENSRNOT00000098550

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FVF3-F1-model_v2 AlphaFold Q5FVF3 1-562 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307770 AgrOrtholog
BioCyc Gene G2FUF-32795 BioCyc
Ensembl Genes ENSRNOG00000008897 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000059486.2 UniProtKB/TrEMBL
  ENSRNOP00000086095 ENTREZGENE
  ENSRNOP00000086095.1 UniProtKB/TrEMBL
  ENSRNOP00000096170 ENTREZGENE
  ENSRNOP00000096170.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000063876.2 UniProtKB/TrEMBL
  ENSRNOT00000098550 ENTREZGENE
  ENSRNOT00000098550.1 UniProtKB/TrEMBL
  ENSRNOT00000113842 ENTREZGENE
  ENSRNOT00000113842.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.160 UniProtKB/TrEMBL
  1.25.40.90 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7366311 IMAGE-MGC_LOAD
InterPro Clathrin/coatomer_app_Ig-like UniProtKB/TrEMBL
  Clathrin_a/b/g-adaptin_app_Ig UniProtKB/TrEMBL
  Clathrin_g-adaptin_app UniProtKB/TrEMBL
  ENTH_VHS UniProtKB/TrEMBL
  GAT UniProtKB/TrEMBL
  GAT_sf UniProtKB/TrEMBL
  GGA_N-GAT UniProtKB/TrEMBL
  VHS UniProtKB/TrEMBL
KEGG Report rno:300066 UniProtKB/TrEMBL
MGC_CLONE MGC:109601 IMAGE-MGC_LOAD
NCBI Gene 300066 ENTREZGENE
Pfam Alpha_adaptinC2 UniProtKB/TrEMBL
  GAT UniProtKB/TrEMBL
  GGA_N-GAT UniProtKB/TrEMBL
  VHS UniProtKB/TrEMBL
PhenoGen Gga1 PhenoGen
PROSITE GAE UniProtKB/TrEMBL
  GAT UniProtKB/TrEMBL
  VHS UniProtKB/TrEMBL
SMART Alpha_adaptinC2 UniProtKB/TrEMBL
  VHS UniProtKB/TrEMBL
Superfamily-SCOP Clath_adapt UniProtKB/TrEMBL
  ENTH_VHS UniProtKB/TrEMBL
UniProt A0A8I6GEK9_RAT UniProtKB/TrEMBL
  A0A8I6GLY6_RAT UniProtKB/TrEMBL
  F7FHC7_RAT UniProtKB/TrEMBL
  Q5FVF3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Gga1  golgi associated, gamma adaptin ear containing, ARF binding protein 1  Gga1_predicted  golgi associated, gamma adaptin ear containing, ARF binding protein 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Gga1_predicted  golgi associated, gamma adaptin ear containing, ARF binding protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED