Cacna1i (calcium voltage-gated channel subunit alpha1 I) - Rat Genome Database

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Gene: Cacna1i (calcium voltage-gated channel subunit alpha1 I) Rattus norvegicus
Analyze
Symbol: Cacna1i
Name: calcium voltage-gated channel subunit alpha1 I
RGD ID: 68944
Description: Enables low voltage-gated calcium channel activity. Involved in calcium ion import and calcium ion transport into cytosol. Acts upstream of or within calcium ion transport and regulation of membrane potential. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in neuron projection. Biomarker of sciatic neuropathy. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human CACNA1I (calcium voltage-gated channel subunit alpha1 I); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; mitogen activated protein kinase signaling pathway; INTERACTS WITH 3-isobutyl-1-methyl-7H-xanthine; ammonium chloride; androgen antagonist.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: calcium channel, voltage-dependent, alpha 1I subunit; calcium channel, voltage-dependent, T type, alpha 1I subunit; caVT.3; hypothetical gene supported by NM_020084; LOC497824; low voltage-activated T-type calcium channel alpha-1 subunit (CACNA1I); voltage-dependent calcium channel; voltage-dependent T-type calcium channel subunit alpha-1I; voltage-gated calcium channel subunit alpha Cav3.3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27111,835,996 - 111,947,418 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,836,012 - 111,944,688 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7113,591,130 - 113,702,387 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07115,814,660 - 115,925,924 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07115,784,029 - 115,895,287 (+)NCBIRnor_WKY
Rnor_6.07121,521,787 - 121,619,300 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,511,097 - 121,619,283 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07121,509,362 - 121,609,542 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47118,582,279 - 118,681,537 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17118,604,777 - 118,715,750 (+)NCBI
Celera7108,173,442 - 108,270,677 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Voltage-gated calcium channels. Catterall WA Cold Spring Harb Perspect Biol. 2011 Aug 1;3(8):a003947. doi: 10.1101/cshperspect.a003947.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Methamphetamine blunts Ca(2+) currents and excitatory synaptic transmission through D1/5 receptor-mediated mechanisms in the mouse medial prefrontal cortex. González B, etal., Addict Biol. 2016 May;21(3):589-602. doi: 10.1111/adb.12249. Epub 2015 Apr 14.
5. Temperature dependence of T-type calcium channel gating. Iftinca M, etal., Neuroscience. 2006 Nov 3;142(4):1031-42. Epub 2006 Aug 28.
6. Distinct contributions of different structural regions to the current kinetics of the Cav3.3 T-type Ca2+ channel. Kang HW, etal., Biochim Biophys Acta. 2008 Dec;1778(12):2740-8. Epub 2008 Aug 9.
7. Identification of T-type alpha1H Ca2+ channels (Ca(v)3.2) in major pelvic ganglion neurons. Lee JH, etal., J Neurophysiol 2002 Jun;87(6):2844-50.
8. Cloning and expression of a novel member of the low voltage-activated T-type calcium channel family. Lee JH, etal., J Neurosci 1999 Mar 15;19(6):1912-21.
9. Spontaneous regenerative activity in mammalian retinal bipolar cells: roles of multiple subtypes of voltage-dependent Ca2+ channels. Ma YP and Pan ZH, Vis Neurosci 2003 Mar-Apr;20(2):131-9.
10. Molecular and functional characterization of a family of rat brain T-type calcium channels. McRory JE, etal., J Biol Chem 2001 Feb 9;276(6):3999-4011.
11. Alternative splicing of the rat Ca(v)3.3 T-type calcium channel gene produces variants with distinct functional properties(1). Murbartian J, etal., FEBS Lett 2002 Sep 25;528(1-3):272-8.
12. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
13. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
14. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
16. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
17. Intrathecal administration of Cav3.2 and Cav3.3 antisense oligonucleotide reverses tactile allodynia and thermal hyperalgesia in rats following chronic compression of dorsal root of ganglion. Wen XJ, etal., Acta Pharmacol Sin. 2006 Dec;27(12):1547-52. doi: 10.1111/j.1745-7254.2006.00461.x.
18. Further evidence for the genetic association between CACNA1I and schizophrenia. Xie Y, etal., Hereditas. 2018 Jan 2;155:16. doi: 10.1186/s41065-017-0054-0. eCollection 2018.
19. Genetic risk between the CACNA1I gene and schizophrenia in Chinese Uygur population. Xu W, etal., Hereditas. 2017 Jul 17;155:5. doi: 10.1186/s41065-017-0037-1. eCollection 2018.
20. Upregulation of T-type Ca2+ channels in primary sensory neurons in spinal nerve injury. Yue J, etal., Spine (Phila Pa 1976). 2013 Mar 15;38(6):463-70. doi: 10.1097/BRS.0b013e318272fbf8.
Additional References at PubMed
PMID:16505194   PMID:16567615   PMID:21808016   PMID:25454347   PMID:28974111   PMID:31666636  


Genomics

Comparative Map Data
Cacna1i
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27111,835,996 - 111,947,418 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,836,012 - 111,944,688 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7113,591,130 - 113,702,387 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07115,814,660 - 115,925,924 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07115,784,029 - 115,895,287 (+)NCBIRnor_WKY
Rnor_6.07121,521,787 - 121,619,300 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,511,097 - 121,619,283 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07121,509,362 - 121,609,542 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47118,582,279 - 118,681,537 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17118,604,777 - 118,715,750 (+)NCBI
Celera7108,173,442 - 108,270,677 (+)NCBICelera
Cytogenetic Map7q34NCBI
CACNA1I
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382239,570,753 - 39,689,735 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2239,570,753 - 39,689,735 (+)EnsemblGRCh38hg38GRCh38
GRCh372239,966,758 - 40,085,740 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,296,704 - 38,415,686 (+)NCBINCBI36Build 36hg18NCBI36
Build 342238,291,257 - 38,410,238NCBI
Celera2223,768,830 - 23,887,794 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2222,931,166 - 23,048,848 (+)NCBIHuRef
CHM1_12239,925,499 - 40,044,841 (+)NCBICHM1_1
T2T-CHM13v2.02240,041,540 - 40,160,671 (+)NCBIT2T-CHM13v2.0
Cacna1i
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391580,171,439 - 80,282,493 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1580,171,439 - 80,282,480 (+)EnsemblGRCm39 Ensembl
GRCm381580,287,238 - 80,398,292 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1580,287,238 - 80,398,279 (+)EnsemblGRCm38mm10GRCm38
MGSCv371580,117,668 - 80,228,722 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361580,114,300 - 80,225,547 (+)NCBIMGSCv36mm8
Celera1582,404,367 - 82,516,148 (+)NCBICelera
Cytogenetic Map15E1NCBI
Cacna1i
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541325,453,703 - 25,535,530 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541325,440,533 - 25,538,367 (+)NCBIChiLan1.0ChiLan1.0
CACNA1I
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12238,325,411 - 38,412,923 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2238,296,436 - 38,414,963 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02220,463,511 - 20,595,253 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CACNA1I
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11025,381,446 - 25,493,680 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1025,380,943 - 25,482,852 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1025,317,909 - 25,429,936 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01026,133,456 - 26,245,748 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1026,134,925 - 26,234,803 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11025,845,366 - 25,946,629 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01026,167,842 - 26,279,957 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01026,337,549 - 26,455,352 (-)NCBIUU_Cfam_GSD_1.0
Cacna1i
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049458,980,016 - 9,035,382 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364921,998,793 - 2,075,257 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049364921,990,430 - 2,030,744 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNA1I
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl58,595,909 - 8,701,367 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.158,593,014 - 8,702,734 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.255,894,595 - 6,011,363 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CACNA1I
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11922,129,795 - 22,264,485 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1922,143,980 - 22,261,098 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045103,346,665 - 103,503,501 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacna1i
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247528,705,149 - 8,785,272 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247528,702,320 - 8,795,192 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cacna1i
503 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:93
Count of miRNA genes:75
Interacting mature miRNAs:80
Transcripts:ENSRNOT00000048790
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat

Markers in Region
D7Hmgc1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27111,862,692 - 111,862,898 (+)MAPPERmRatBN7.2
Rnor_6.07121,536,547 - 121,536,752NCBIRnor6.0
Rnor_5.07121,524,620 - 121,524,825UniSTSRnor5.0
RGSC_v3.47118,596,768 - 118,596,974RGDRGSC3.4
RGSC_v3.47118,596,769 - 118,596,974UniSTSRGSC3.4
Celera7108,189,147 - 108,189,352UniSTS
RH 3.4 Map7860.8UniSTS
RH 3.4 Map7860.8RGD
Cytogenetic Map7q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 42
Low 26 8 23
Below cutoff 12 19 8 17 8 6 7 6 14 18 7 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000084352
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7111,846,738 - 111,944,688 (+)Ensembl
Rnor_6.0 Ensembl7121,521,787 - 121,619,194 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000086192
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7121,511,097 - 121,614,469 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092608
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7111,836,012 - 111,944,688 (+)Ensembl
Rnor_6.0 Ensembl7121,511,097 - 121,619,283 (+)Ensembl
RefSeq Acc Id: NM_020084   ⟹   NP_064469
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27111,846,738 - 111,944,705 (+)NCBI
Rnor_6.07121,521,787 - 121,619,300 (+)NCBI
Rnor_5.07121,509,362 - 121,609,542 (+)NCBI
RGSC_v3.47118,582,279 - 118,681,537 (+)RGD
Celera7108,173,442 - 108,270,677 (+)RGD
Sequence:
RefSeq Acc Id: XM_039079795   ⟹   XP_038935723
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27111,835,997 - 111,947,418 (+)NCBI
RefSeq Acc Id: XM_039079796   ⟹   XP_038935724
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27111,835,996 - 111,947,418 (+)NCBI
RefSeq Acc Id: XM_039079797   ⟹   XP_038935725
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27111,835,997 - 111,947,418 (+)NCBI
RefSeq Acc Id: XM_039079798   ⟹   XP_038935726
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27111,835,997 - 111,947,418 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_064469   ⟸   NM_020084
- UniProtKB: A0A8I5ZQK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038935724   ⟸   XM_039079796
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038935723   ⟸   XM_039079795
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038935725   ⟸   XM_039079797
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038935726   ⟸   XM_039079798
- Peptide Label: isoform X4
Protein Domains
Ion transport

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z0Y8-F1-model_v2 AlphaFold Q9Z0Y8 1-2201 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:68944 AgrOrtholog
BioCyc Gene G2FUF-32703 BioCyc
Ensembl Genes ENSRNOG00000060407 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000080577 ENTREZGENE
  ENSRNOP00000080577.1 UniProtKB/TrEMBL
  ENSRNOP00000095801 ENTREZGENE
  ENSRNOP00000095801.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084352 ENTREZGENE
  ENSRNOT00000084352.2 UniProtKB/TrEMBL
  ENSRNOT00000092608 ENTREZGENE
  ENSRNOT00000092608.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCC_T_a1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCCAlpha1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VGCC_Ca_Na UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:56827 UniProtKB/Swiss-Prot
NCBI Gene 56827 ENTREZGENE
PANTHER PTHR10037 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10037:SF209 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cacna1i PhenoGen
PRINTS CACHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TVDCCALPHA1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Voltage-gated potassium channels UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC209367
UniProt A0A8I5ZQK3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6APG9_RAT UniProtKB/TrEMBL
  CAC1I_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q9EQ59 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-11 Cacna1i  calcium voltage-gated channel subunit alpha1 I  Cacna1i  calcium channel, voltage-dependent, T type, alpha 1I subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-04-17 Cacna1i  calcium channel, voltage-dependent, T type, alpha 1I subunit  LOC497824  hypothetical gene supported by NM_020084  Data Merged 737654 PROVISIONAL
2008-09-29 Cacna1i  calcium channel, voltage-dependent, T type, alpha 1I subunit  Cacna1i  calcium channel, voltage-dependent, alpha 1I subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC497824  hypothetical gene supported by NM_020084      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-09-10 Cacna1i  calcium channel, voltage-dependent, alpha 1I subunit    calcium channel, voltage-dependent, T type, alpha 1I subunit  Name updated 1299863 APPROVED
2002-06-10 Cacna1i  calcium channel, voltage-dependent, T type, alpha 1I subunit      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed throughout the newborn and juvenile brain 62421
gene_expression mRNA expression is restricted to the striatum 68748
gene_process mediates voltage-dependent entry of calcium into nerve, muscle, and endocrine cells 68748
gene_process responsible for central neuron rebound burst firing and implicated in slow wave sleep and epilepsy 68748
gene_process may play a role in hormone secretion and smooth muscle excitability 68748