Gene: Hhla1 (HHLA1 neighbor of OC90) Rattus norvegicus
Analyze
Symbol:
Hhla1 (Ensembl: AABR07058254.1)
Name:
HHLA1 neighbor of OC90 (Ensembl:HERV-H LTR-associating 1)
RGD ID:
15008789
Description:
Orthologous to human HHLA1 (HHLA1 neighbor of OC90); INTERACTS WITH benzo[a]pyrene (ortholog); cadmium dichloride (ortholog); titanium dioxide (ortholog).
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
AABR07058254.1; HERV-H LTR-associating 1; HERV-H LTR-associating protein 1; NEWGENE_15008789
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 7 99,558,945 - 99,600,389 (-) NCBI GRCr8 mRatBN7.2 7 97,670,946 - 97,711,308 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 7 97,674,538 - 97,711,308 (-) Ensembl mRatBN7.2 Ensembl Rnor_6.0 Ensembl 7 106,663,424 - 106,695,570 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Cytogenetic Map 7 q33 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Genomics
Comparative Map Data
Hhla1 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 7 99,558,945 - 99,600,389 (-) NCBI GRCr8 mRatBN7.2 7 97,670,946 - 97,711,308 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 7 97,674,538 - 97,711,308 (-) Ensembl mRatBN7.2 Ensembl Rnor_6.0 Ensembl 7 106,663,424 - 106,695,570 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Cytogenetic Map 7 q33 NCBI
HHLA1 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 8 132,061,480 - 132,111,157 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 8 132,061,480 - 132,111,159 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 8 133,073,727 - 133,123,404 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 8 133,139,449 - 133,197,055 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 8 133,145,213 - 133,162,533 NCBI Celera 8 129,249,437 - 129,293,200 (-) NCBI Celera Cytogenetic Map 8 q24.22 NCBI HuRef 8 128,391,286 - 128,435,044 (-) NCBI HuRef CHM1_1 8 133,114,543 - 133,158,318 (-) NCBI CHM1_1 T2T-CHM13v2.0 8 133,184,384 - 133,234,063 (-) NCBI T2T-CHM13v2.0
Hhla1 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 15 65,794,292 - 65,848,653 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 15 65,788,458 - 65,848,653 (-) Ensembl GRCm39 Ensembl GRCm38 15 65,922,443 - 65,976,804 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 15 65,916,609 - 65,976,804 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 15 65,754,005 - 65,808,366 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 15 65,754,005 - 65,808,366 (-) NCBI MGSCv36 mm8 Celera 15 67,430,071 - 67,484,385 (-) NCBI Celera Cytogenetic Map 15 D1 NCBI cM Map 15 29.16 NCBI
Hhla1 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955461 6,745,714 - 6,774,493 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955461 6,738,022 - 6,774,493 (-) NCBI ChiLan1.0 ChiLan1.0
HHLA1 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 7 149,444,755 - 149,494,575 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 8 124,959,342 - 125,009,173 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 8 128,710,411 - 128,754,339 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 8 131,689,794 - 131,731,482 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 8 131,689,794 - 131,731,482 (-) Ensembl panpan1.1 panPan2
HHLA1 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 13 28,716,928 - 28,751,272 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 13 28,717,603 - 28,751,272 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 13 28,689,957 - 28,724,103 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 13 29,071,735 - 29,105,932 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 13 29,072,196 - 29,105,932 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 13 28,798,842 - 28,832,995 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 13 28,898,520 - 28,932,699 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 13 29,210,510 - 29,244,685 (-) NCBI UU_Cfam_GSD_1.0
Hhla1 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405303 9,606,294 - 9,639,545 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936470 17,032,679 - 17,059,636 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936470 17,032,679 - 17,065,033 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
HHLA1 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 4 8,995,352 - 9,014,846 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 4 8,971,719 - 9,017,912 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 4 9,008,168 - 9,054,096 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
HHLA1 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 8 126,508,204 - 126,545,327 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 8 126,508,922 - 126,545,115 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666039 13,556,055 - 13,602,106 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Hhla1
Expression
RNA-SEQ Expression
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
4
8
79
11
10
1
2
1
3
22
17
69
8
9
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Sequence
Ensembl Acc Id:
ENSRNOT00000083517 ⟹ ENSRNOP00000075330
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 7 97,674,538 - 97,711,308 (-) Ensembl Rnor_6.0 Ensembl 7 106,663,424 - 106,695,570 (-) Ensembl
RefSeq Acc Id:
XM_039080212 ⟹ XP_038936140
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 7 99,558,945 - 99,600,389 (-) NCBI mRatBN7.2 7 97,670,946 - 97,711,308 (-) NCBI
Ensembl Acc Id:
ENSRNOP00000075330 ⟸ ENSRNOT00000083517
RefSeq Acc Id:
XP_038936140 ⟸ XM_039080212
- UniProtKB:
A0A0G2KAB0 (UniProtKB/TrEMBL)
Additional Information
Nomenclature History
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2024-03-25
Hhla1
HHLA1 neighbor of OC90
Hhla1
HERV-H LTR-associating 1
Nomenclature updated to reflect human and mouse nomenclature
1299863 APPROVED
2024-02-22
Hhla1
HERV-H LTR-associating 1
AABR07058254.1
HERV-H LTR-associating 1
Symbol changed
629549 APPROVED
2024-02-15
AABR07058254.1
HERV-H LTR-associating 1
Hhla1
HHLA1 neighbor of OC90
Symbol and/or name change
19259462 PROVISIONAL
2024-02-09
Hhla1
HHLA1 neighbor of OC90
AABR07058254.1
HERV-H LTR-associating 1
Nomenclature updated to reflect human and mouse nomenclature
1299863 APPROVED
2024-02-01
AABR07058254.1
HERV-H LTR-associating 1
Hhla1
HHLA1 neighbor of OC90
Symbol and/or name change
19259462 PROVISIONAL
2023-09-28
Hhla1
HHLA1 neighbor of OC90
AABR07058254.1
HERV-H LTR-associating 1
Nomenclature updated to reflect human and mouse nomenclature
1299863 APPROVED
2021-08-31
AABR07058254.1
HERV-H LTR-associating protein 1
Hhla1
HERV-H LTR-associating 1
Symbol and/or name change
19259462 PROVISIONAL
2021-02-23
AABR07058254.1
Hhla1
HERV-H LTR-associating 1
Symbol and/or name change
19259462 PROVISIONAL
2021-02-23
Hhla1
HERV-H LTR-associating 1
NEWGENE_15008789
HERV-H LTR-associating 1
Data merged from RGD:41003133
737654 PROVISIONAL
2021-01-26
NEWGENE_15008789
HERV-H LTR-associating 1
Symbol and Name status set to provisional
70820 PROVISIONAL
2020-08-20
Hhla1
HERV-H LTR-associating 1
AABR07058254.1
Symbol and/or name change
19259462 PROVISIONAL
2020-02-07
AABR07058254.1
Hhla1
HERV-H LTR-associating 1
Symbol and/or name change
19259462 PROVISIONAL
