Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Hoxc5 (homeo box C5) Rattus norvegicus
Analyze
Symbol: Hoxc5
Name: homeo box C5
Description: Predicted to have RNA polymerase II distal enhancer sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and embryonic skeletal system development. Predicted to localize to the cell junction and nucleoplasm. Orthologous to human HOXC5 (homeobox C5); INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol 3-benzoate; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: homeobox protein Hox-C5; LOC315341
Orthologs:
Homo sapiens (human) : HOXC5 (homeobox C5)  HGNC  Alliance
Mus musculus (house mouse) : Hoxc5 (homeobox C5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hoxc5 (homeobox C5)
Pan paniscus (bonobo/pygmy chimpanzee) : HOXC5 (homeobox C5)
Canis lupus familiaris (dog) : HOXC5 (homeobox C5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hoxc5 (homeobox C5)
Sus scrofa (pig) : HOXC5 (homeobox C5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07144,628,120 - 144,631,542 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7144,628,120 - 144,631,542 (+)Ensembl
Rnor_5.07142,419,477 - 142,422,899 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47141,777,331 - 141,780,753 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17141,856,371 - 141,857,803 (+)NCBI
Celera7130,576,883 - 130,580,305 (+)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Hoxc5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1307584
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.