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Gene: LOC108351558 (uncharacterized LOC108351558) Rattus norvegicus

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Symbol:

LOC108351558

Name:

uncharacterized LOC108351558

RGD ID:

11486201

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	136,664,599 - 136,667,986 (+)	NCBI		GRCr8
mRatBN7.2	7	134,786,189 - 134,789,611 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	7	145,282,840 - 145,286,962 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Cytogenetic Map	7	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	121393075	137014596	Rat
634331	Pia17	Pristane induced arthritis QTL 17	4.7		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	7	132099939	137014596	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	98549867	137014596	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	100548246	137014596	Rat
61397	Bw17	Body weight QTL 17	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	7	95485047	137014596	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	92362341	137014596	Rat
1357339	Stl14	Serum triglyceride level QTL 14	3.45	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	135371291	137014596	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_001839061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_001839061

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	136,664,599 - 136,667,986 (+)	NCBI
mRatBN7.2	7	134,786,189 - 134,789,611 (+)	NCBI
Rnor_6.0	7	145,282,840 - 145,286,962 (+)	NCBI

Sequence:

show sequence

AAGTTATAATATTAGTTATTTGAAATTTTGAAACACCATTAATGAAATTAAGGTCTCATTCTTT
GTCTTATCTGCCAACATCCAAGGTATTGTCTTTCTGGAAACCCACTGGCCAGCTCTGCCAGAGA
ATCAGCCTTTCTCCCTCACCGCATATCTTTATCTCATTTGCCAACACCTGAGGTAGTCCCTCCC
TGGAAACCCACTGGACATACTGGCCAGTGATCGGGAACTAAATGGTCAAAGGTGGGGTAGAAAC
CCCAGATTGGGACTAAAGATTTCAACAACAGGATCCTAGCATAACTGTTCTCTACGAAGTTCCA
CCCAACAGCCAATAAAAGCAGATGCAGAGACCTACAGCCAAACATTAGATGGAGCTCAGGAGTT
TTGTGGAAGGATTGAGGGACCTTAACAGGATAGCAACTCTACAGGAAGATCAACAGAGTCAACT
ATCCTGGACCCTTCGGTGCTCCCAGTGACTGAACCATCAACCAAAGAGCATGGGCTGAACTTAA
TGCCCTCTCCCAGCATAGATAGCAGATGTGCAGCTTTGTCTTCATCCTGGTACTTCAACAACTG
AAGCGGAGGTTGTCCCTCAATCTGATACACACCTGTGGATCCAGTTCTCCTAACTGGGTTGCCT
TGTCTGATCTCAGTGGGAGAAGATGTGCCTAATTCTGCAGTGACTTGATTTGCCAGGGTAGGGT
GACAACATGGGGAGAGGGCTGCCCCCCTCCTCAGAGGAGAAGGGGAAGGGGAGAGGGGAGGATC
TGGGGGACTGGAAGGAGGGGTCTGATATTTGGATGTAAAGGGAATAACTAAGTAAATTAATGAA
AAATAACTAAAGGCCTTATGGAAACCTAATATAATAGAAGCTTTTTAAAATATACACATATGAA
AGAAATCCAAATGAAACACCAAATAATGAGAGAGACAAAACCCCAACAAGACATCTCTGGCTAC
TAAATGAACCCCAGGGTCTGGAATGGGTTGCATCTGAGTCATGGAAAACCCCAAATTACCTAGG
CTATTGTCAAGGCTGTTGGTTCCTCTTTAAAAACCGTTGGCCTCTATGTTGAGAAGAATGTCTA
CATATTGTGTGGAATATGAGGAGGTTGAACTGGTGCCTTTCTAGAGCCTTTATCCCTACTGACT
AGTGTTGATGGTACTGGGAGATACTATGTACACCATCAGAGGAGAAAGCTATACCACAAACAGG
CTACAAAACGTGATCTGCTTGCGTGATAAACCAGTACACTAGTAGCACAAAAACTGTGGAAGTA
ACTGGCCACTATCAGCTTGGATTTAAGGCCCACTCCATGAGATGGAACTCACACCTCACACCAG
TTTTAAGTGGCTAAGAACTTTTGACTACATAGGCCATAGTCCTAGAAGAAAACCAAATTCTGCT
TTCCTACTAATAGTAGTCCTAATGATATTCTGCTATACTTATAGACAGTATTTTGCCCAGCCAT
CATCAGAAAAGCTTCTGACTGTAGTAGATGGGAACAAATTCAGTGACCCACAACTGAACGATAT
GCAGAGAGTGTGAGGGCTTGGAACCCTCAACCCTTTATGACATGTCCCCATGATTATTTCCTCT
TAGGGGTCAGGAATCTTTAAAGAAGGGGAGGTTGAAAGATTGTAAGAGCCAGTGGGAATAGAAG
ACATGAATGAAACAAAGCCCTCAGGACTGGTGCATATATGAACTCACAGGGACTGGAGCATTGT
GCACAGGACCTGCACAGGTCTAAGCGGCAAGGATTC

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Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-31860	BioCyc
NCBI Gene	LOC108351558	ENTREZGENE
PhenoGen	LOC108351558	PhenoGen
RNAcentral	URS0000CCF9D0	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-02	LOC108351558	uncharacterized LOC108351558			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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