Eif3d (eukaryotic translation initiation factor 3, subunit D) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Eif3d (eukaryotic translation initiation factor 3, subunit D) Rattus norvegicus
Analyze
Symbol: Eif3d
Name: eukaryotic translation initiation factor 3, subunit D
RGD ID: 1303255
Description: Predicted to enable mRNA cap binding activity and translation initiation factor activity. Predicted to be involved in several processes, including IRES-dependent viral translational initiation; cytoplasmic translational initiation; and viral translational termination-reinitiation. Predicted to be part of eukaryotic translation initiation factor 3 complex, eIF3m. Predicted to be active in synapse. Orthologous to human EIF3D (eukaryotic translation initiation factor 3 subunit D); PARTICIPATES IN translation initiation pathway; RNA transport pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: eIF-3-zeta; Eif3s7; eukaryotic translation initiation factor 3 subunit 7; eukaryotic translation initiation factor 3 subunit D; eukaryotic translation initiation factor 3, subunit 7 (zeta); MGC93918
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,420,351 - 111,432,761 (-)NCBIGRCr8
mRatBN7.27109,539,795 - 109,552,184 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,539,356 - 109,552,206 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,289,645 - 111,302,037 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,513,203 - 113,525,595 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,481,200 - 113,493,575 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,188,189 - 119,200,578 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,188,185 - 119,200,623 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,182,951 - 119,195,340 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47115,877,161 - 115,889,550 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17115,911,390 - 115,923,780 (-)NCBI
Celera7105,880,627 - 105,893,016 (-)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The scanning mechanism of eukaryotic translation initiation. Hinnebusch AG Annu Rev Biochem. 2014;83:779-812. doi: 10.1146/annurev-biochem-060713-035802. Epub 2014 Jan 29.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:9573242   PMID:17322308   PMID:17581632   PMID:18599441   PMID:19946888   PMID:21347434   PMID:22082260   PMID:22658674   PMID:22681889   PMID:24003236   PMID:24092755   PMID:25849773  
PMID:27462815  


Genomics

Comparative Map Data
Eif3d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,420,351 - 111,432,761 (-)NCBIGRCr8
mRatBN7.27109,539,795 - 109,552,184 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,539,356 - 109,552,206 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,289,645 - 111,302,037 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,513,203 - 113,525,595 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,481,200 - 113,493,575 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,188,189 - 119,200,578 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,188,185 - 119,200,623 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,182,951 - 119,195,340 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47115,877,161 - 115,889,550 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17115,911,390 - 115,923,780 (-)NCBI
Celera7105,880,627 - 105,893,016 (-)NCBICelera
Cytogenetic Map7q34NCBI
EIF3D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,510,855 - 36,529,166 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,510,855 - 36,529,184 (-)EnsemblGRCh38hg38GRCh38
GRCh372236,906,902 - 36,925,213 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,236,843 - 35,255,223 (-)NCBINCBI36Build 36hg18NCBI36
Build 342235,231,397 - 35,249,983NCBI
Celera2220,709,038 - 20,727,412 (-)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2219,874,728 - 19,893,087 (-)NCBIHuRef
CHM1_12236,865,836 - 36,884,218 (-)NCBICHM1_1
T2T-CHM13v2.02236,971,029 - 36,989,335 (-)NCBIT2T-CHM13v2.0
Eif3d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391577,843,201 - 77,855,006 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1577,843,198 - 77,855,013 (-)EnsemblGRCm39 Ensembl
GRCm381577,958,998 - 77,970,824 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1577,958,998 - 77,970,813 (-)EnsemblGRCm38mm10GRCm38
MGSCv371577,789,428 - 77,801,254 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361577,786,256 - 77,798,015 (-)NCBIMGSCv36mm8
Celera1579,418,242 - 79,430,068 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1536.92NCBI
Eif3d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,092,749 - 23,110,312 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,096,440 - 23,110,312 (-)NCBIChiLan1.0ChiLan1.0
EIF3D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22346,365,301 - 46,383,977 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12249,056,546 - 49,075,197 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02217,425,745 - 17,444,130 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12235,262,541 - 35,282,360 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2235,262,541 - 35,282,360 (-)Ensemblpanpan1.1panPan2
EIF3D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,890,913 - 27,904,887 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,890,938 - 27,904,886 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1027,844,591 - 27,858,525 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01028,676,131 - 28,690,129 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1028,676,132 - 28,690,138 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11028,404,604 - 28,418,627 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,712,367 - 28,726,367 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,891,157 - 28,905,180 (+)NCBIUU_Cfam_GSD_1.0
Eif3d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494511,245,864 - 11,260,055 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364924,255,977 - 4,271,081 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364924,256,210 - 4,270,469 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF3D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl511,213,312 - 11,229,158 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1511,213,312 - 11,229,158 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,895,436 - 8,911,620 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EIF3D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,220,542 - 19,238,534 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1919,221,199 - 19,238,468 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045106,632,591 - 106,651,239 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eif3d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475211,197,189 - 11,212,440 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Eif3d
49 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:46
Count of miRNA genes:44
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000029753
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat

Markers in Region
RH128317  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27109,539,862 - 109,540,410 (+)MAPPERmRatBN7.2
Rnor_6.07119,188,257 - 119,188,804NCBIRnor6.0
Rnor_5.07119,183,019 - 119,183,566UniSTSRnor5.0
RGSC_v3.47115,877,229 - 115,877,776UniSTSRGSC3.4
Celera7105,880,695 - 105,881,242UniSTS
RH 3.4 Map7811.2UniSTS
Cytogenetic Map7q34UniSTS
RH125745  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27109,539,812 - 109,540,405 (+)MAPPERmRatBN7.2
Rnor_6.07119,188,207 - 119,188,799NCBIRnor6.0
Rnor_5.07119,182,969 - 119,183,561UniSTSRnor5.0
RGSC_v3.47115,877,179 - 115,877,771UniSTSRGSC3.4
Celera7105,880,645 - 105,881,237UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000029753   ⟹   ENSRNOP00000032361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7109,539,356 - 109,552,206 (-)Ensembl
Rnor_6.0 Ensembl7119,188,185 - 119,200,623 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104391   ⟹   ENSRNOP00000096030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7109,539,356 - 109,552,206 (-)Ensembl
RefSeq Acc Id: NM_001004283   ⟹   NP_001004283
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,420,351 - 111,432,740 (-)NCBI
mRatBN7.27109,539,795 - 109,552,184 (-)NCBI
Rnor_6.07119,188,189 - 119,200,578 (-)NCBI
Rnor_5.07119,182,951 - 119,195,340 (-)NCBI
RGSC_v3.47115,877,161 - 115,889,550 (-)RGD
Celera7105,880,627 - 105,893,016 (-)RGD
Sequence:
RefSeq Acc Id: XM_006241938   ⟹   XP_006242000
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,420,351 - 111,432,761 (-)NCBI
mRatBN7.27109,539,795 - 109,552,029 (-)NCBI
Rnor_6.07119,188,189 - 119,200,470 (-)NCBI
Rnor_5.07119,182,951 - 119,195,340 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001004283   ⟸   NM_001004283
- UniProtKB: Q6AYK8 (UniProtKB/Swiss-Prot),   A0A8I6GLW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242000   ⟸   XM_006241938
- Peptide Label: isoform X1
- UniProtKB: Q6AYK8 (UniProtKB/Swiss-Prot),   A0A8I6GLW5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000032361   ⟸   ENSRNOT00000029753
Ensembl Acc Id: ENSRNOP00000096030   ⟸   ENSRNOT00000104391

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYK8-F1-model_v2 AlphaFold Q6AYK8 1-548 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695454
Promoter ID:EPDNEW_R5979
Type:initiation region
Name:Eif3d_1
Description:eukaryotic translation initiation factor 3, subunit D
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07119,200,591 - 119,200,651EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303255 AgrOrtholog
BioCyc Gene G2FUF-32849 BioCyc
Ensembl Genes ENSRNOG00000005804 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055027805 UniProtKB/Swiss-Prot
  ENSRNOG00060029690 UniProtKB/Swiss-Prot
  ENSRNOG00065032951 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000029753.4 UniProtKB/Swiss-Prot
  ENSRNOT00000104391.1 UniProtKB/TrEMBL
  ENSRNOT00055048175 UniProtKB/Swiss-Prot
  ENSRNOT00060051568 UniProtKB/Swiss-Prot
  ENSRNOT00065056688 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7113045 IMAGE-MGC_LOAD
InterPro eIF3d UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362952 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93918 IMAGE-MGC_LOAD
NCBI Gene 362952 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT D UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12399 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam eIF-3_zeta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Eif3d PhenoGen
PIRSF EIF-3_zeta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005804 RatGTEx
  ENSRNOG00055027805 RatGTEx
  ENSRNOG00060029690 RatGTEx
  ENSRNOG00065032951 RatGTEx
UniProt A0A8I6GLW5 ENTREZGENE, UniProtKB/TrEMBL
  EIF3D_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Eif3d  eukaryotic translation initiation factor 3, subunit D  Eif3s7  eukaryotic translation initiation factor 3, subunit 7 (zeta)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Eif3s7  eukaryotic translation initiation factor 3, subunit 7 (zeta)    eukaryotic translation initiation factor 3 subunit 7  Name updated 1299863 APPROVED
2005-09-30 Eif3s7        Symbol and Name status set to provisional 70820 PROVISIONAL