Recql4 (RecQ like helicase 4) - Rat Genome Database

Name: Recql4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Recql4 (RecQ like helicase 4) Rattus norvegicus

Analyze

Symbol:

Recql4

Name:

RecQ like helicase 4

RGD ID:

1307732

Description:

Predicted to enable DNA binding activity and DNA helicase activity. Predicted to be involved in DNA unwinding involved in DNA replication; double-strand break repair via homologous recombination; and telomeric D-loop disassembly. Predicted to act upstream of or within several processes, including negative regulation of sister chromatid cohesion; positive regulation of cell population proliferation; and skeletal system morphogenesis. Predicted to be located in chromosome, telomeric region. Predicted to be active in chromosome; cytoplasm; and nucleus. Human ortholog(s) of this gene implicated in Baller-Gerold syndrome; Rothmund-Thomson syndrome; and rapadilino syndrome. Orthologous to human RECQL4 (RecQ like helicase 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

ATP-dependent DNA helicase Q4; RecQ helicase-like 4; RecQ protein-like 4

RGD Orthologs

Human

Mouse

Chinchilla

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RECQL4 (RecQ like helicase 4)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, Panther, PhylomeDB
Mus musculus (house mouse):	Recql4 (RecQ protein-like 4)	HGNC	NCBI, OMA, HomoloGene, Inparanoid, Panther, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Recql4 (RecQ like helicase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RECQL4 (RecQ like helicase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Recql4 (RecQ like helicase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RECQL4 (RecQ like helicase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RECQL4 (RecQ like helicase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Recql4 (RecQ like helicase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RECQL4 (RecQ like helicase 4)	Alliance	DIOPT (HGNC)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	108,423,453 - 108,430,790 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	7	108,423,455 - 108,430,619 (-)	Ensembl
Rnor_6.0	7	117,765,892 - 117,773,128 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	117,763,783 - 117,773,134 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	117,753,871 - 117,761,090 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	114,752,863 - 114,760,027 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	7	114,787,094 - 114,794,223 (-)	NCBI
Celera	7	104,773,347 - 104,780,504 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

B-lymphoblastic leukemia/lymphoma with ETV6-RUNX1 (ISO)

Baller-Gerold syndrome (ISO)

breast cancer (ISO)

DNA Repair-Deficiency Disorders (ISO)

genetic disease (ISO)

Hereditary Neoplastic Syndromes (ISO)

multiple myeloma (ISO)

rapadilino syndrome (ISO)

Rothmund-Thomson syndrome (ISO)

Rothmund-Thomson Syndrome Type 1 (ISO)

Rothmund-Thomson Syndrome Type 2 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (ISO)

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-amino-2-deoxy-D-glucopyranose (ISO)

4-(ethoxymethylene)-2-phenyloxazol-5-one (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aldehydo-D-glucosamine (ISO)

amphetamine (EXP)

aristolochic acid (ISO)

benzo[a]pyrene (ISO)

beta-D-glucosamine (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

cefaloridine (EXP)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

diazinon (ISO)

dioxygen (ISO)

diuron (EXP)

Enterolactone (ISO)

furan (EXP)

glycidol (EXP)

hydroquinone (ISO)

lead(0) (ISO)

lead(2+) (ISO)

N-ethyl-N-nitrosourea (ISO)

ochratoxin A (EXP)

PCB138 (ISO)

propanal (ISO)

quercetin (ISO)

resveratrol (ISO)

rotenone (ISO)

silver atom (ISO)

silver(0) (ISO)

sulindac sulfide (ISO)

sunitinib (ISO)

testosterone (ISO)

toluene 2,4-diisocyanate (ISO)

trimellitic anhydride (ISO)

Triptolide (ISO)

troglitazone (ISO)

valproic acid (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

DNA duplex unwinding (IBA,ISO)

DNA recombination (IBA)

DNA repair (IBA)

DNA replication (ISO)

DNA unwinding involved in DNA replication (IBA)

double-strand break repair via homologous recombination (IBA)

negative regulation of sister chromatid cohesion (ISO)

pigmentation (ISO)

positive regulation of cell population proliferation (ISO)

skeletal system development (ISO)

skeletal system morphogenesis (ISO)

telomere maintenance (IBA,ISO)

telomeric D-loop disassembly (ISO)

Cellular Component

cellular_component (ND)

chromosome (IBA)

chromosome, telomeric region (ISO)

cytoplasm (IBA)

nucleus (IBA)

Molecular Function

3'-5' DNA helicase activity (IBA,ISO)

ATP binding (IEA)

ATP-dependent DNA/DNA annealing activity (ISO)

bubble DNA binding (ISO)

four-way junction helicase activity (IBA)

molecular_function (ND)

obsolete ATP hydrolysis activity (IEA)

oxidized purine DNA binding (ISO)

protein binding (ISO)

telomeric D-loop binding (ISO)

zinc ion binding (IEA)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	Lindor NM, etal., Am J Med Genet. 2000 Jan 31;90(3):223-8.
4.	MGD data from the GO Consortium
5.	Ng AJ, etal., PLoS Genet. 2015 Apr 10;11(4):e1005160. doi: 10.1371/journal.pgen.1005160. eCollection 2015 Apr.
6.	OMIM Disease Annotation Pipeline
7.	RGD automated data pipeline
8.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	RGD automated import pipeline for gene-chemical interactions
10.	RGD comprehensive gene curation

Additional References at PubMed

PMID:15703196	PMID:16600186	PMID:19177149	PMID:19946888	PMID:22039056

Genomics

Comparative Map Data

Recql4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	108,423,453 - 108,430,790 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	7	108,423,455 - 108,430,619 (-)	Ensembl
Rnor_6.0	7	117,765,892 - 117,773,128 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	117,763,783 - 117,773,134 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	117,753,871 - 117,761,090 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	114,752,863 - 114,760,027 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	7	114,787,094 - 114,794,223 (-)	NCBI
Celera	7	104,773,347 - 104,780,504 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

RECQL4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	8	144,511,288 - 144,517,845 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	8	144,511,288 - 144,517,833 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	8	145,736,671 - 145,743,217 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	145,707,479 - 145,714,008 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	8	145,707,621 - 145,713,976	NCBI
Celera	8	141,912,140 - 141,918,890 (-)	NCBI
Cytogenetic Map	8	q24.3	NCBI
HuRef	8	140,849,825 - 140,856,695 (-)	NCBI		HuRef
CHM1_1	8	145,774,859 - 145,781,399 (-)	NCBI		CHM1_1

Recql4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	76,587,753 - 76,594,820 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	15	76,587,753 - 76,594,748 (-)	Ensembl
GRCm38	15	76,703,553 - 76,710,616 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	76,703,553 - 76,710,548 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	76,534,171 - 76,540,906 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	15	76,530,996 - 76,537,731 (-)	NCBI			mm8
Celera	15	78,197,351 - 78,204,086 (-)	NCBI		Celera
Cytogenetic Map	15	D3	NCBI

Recql4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	3,136,216 - 3,142,422 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955454	3,136,097 - 3,142,525 (-)	NCBI	ChiLan1.0	ChiLan1.0

RECQL4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	37,930,906 - 37,936,653 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	37,930,621 - 37,936,753 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	37,891,440 - 37,897,555 (-)	NCBI
ROS_Cfam_1.0	13	38,404,421 - 38,410,540 (-)	NCBI
UMICH_Zoey_3.1	13	38,096,373 - 38,102,486 (-)	NCBI
UNSW_CanFamBas_1.0	13	38,204,789 - 38,210,471 (-)	NCBI
UU_Cfam_GSD_1.0	13	38,681,262 - 38,687,377 (-)	NCBI

Recql4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	329,124 - 335,703 (+)	NCBI
SpeTri2.0	NW_004936470	7,755,253 - 7,761,705 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RECQL4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	4	287,206 - 293,629 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	378,111 - 384,633 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RECQL4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	138,725,494 - 138,732,286 (-)	NCBI
ChlSab1.1 Ensembl	8	138,725,633 - 138,732,096 (-)	Ensembl
Vero_WHO_p1.0	NW_023666039	1,122,625 - 1,129,469 (+)	NCBI

Recql4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624735	12,345,326 - 12,351,783 (+)	NCBI

Position Markers

RH141373

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	108,423,264 - 108,423,448 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	117,765,702 - 117,765,885	NCBI	Rnor6.0
Rnor_5.0	7	117,753,681 - 117,753,864	UniSTS	Rnor5.0
RGSC_v3.4	7	114,752,673 - 114,752,856	UniSTS	RGSC3.4
Celera	7	104,773,157 - 104,773,340	UniSTS
RH 3.4 Map	7	794.2	UniSTS
Cytogenetic Map	7	q34	UniSTS

BE109516

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	108,424,081 - 108,424,275 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	117,766,519 - 117,766,712	NCBI	Rnor6.0
Rnor_5.0	7	117,754,498 - 117,754,691	UniSTS	Rnor5.0
RGSC_v3.4	7	114,753,490 - 114,753,683	UniSTS	RGSC3.4
Celera	7	104,773,974 - 104,774,167	UniSTS
RH 3.4 Map	7	794.2	UniSTS
Cytogenetic Map	7	q34	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	41333674	119109060	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	43747012	108555253	Rat
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	44421311	118198041	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	64002457	135012528	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	68938720	113886318	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	68938720	113886318	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	68938720	113886318	Rat
631540	Bw9	Body weight QTL 9	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	7	69736226	117455174	Rat
1357338	Stl17	Serum triglyceride level QTL 17	3.23		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	69736356	112729554	Rat
634331	Pia17	Pristane induced arthritis QTL 17	4.7		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	7	73829340	130221005	Rat
7411654	Foco25	Food consumption QTL 25	9.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
7411607	Foco15	Food consumption QTL 15		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
631529	Tls2	T-lymphoma susceptibility QTL 2	0	0.001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	7	80221299	109401111	Rat
1331746	Kidm9	Kidney mass QTL 9	3.934		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	7	80221299	112308525	Rat
1331728	Bp214	Blood pressure QTL 214	2.825		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	80221299	124373579	Rat
1331768	Kidm10	Kidney mass QTL 10	4.62096		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	80221299	125221299	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	81737938	126737938	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	83153392	128153392	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
71114	Niddm14	Non-insulin dependent diabetes mellitus QTL 14	4.5		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	84257275	129257275	Rat
2298475	Eau6	Experimental allergic uveoretinitis QTL 6		0.0029	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	7	84257275	129257275	Rat
1558655	Swd4	Spike wave discharge measurement QTL 4	3.68	0.0002	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge severity grade (CMO:0001988)	7	86983365	131983365	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	90482196	135012528	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	91281130	135012528	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	91412594	129807172	Rat
2313102	Bmd79	Bone mineral density QTL 79	2.3	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	7	94811085	116738842	Rat
1357336	Gluco6	Glucose level QTL 6	3.4		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	7	94811326	116294265	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	96670164	135012528	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	102297359	133492884	Rat
70159	Bp61	Blood pressure QTL 61		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	103146217	116738842	Rat
731174	Uae23	Urinary albumin excretion QTL 23	2.4	0.0042	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	7	104603555	135012528	Rat
2306821	Bp335	Blood pressure QTL 335		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	106571501	135012528	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	126
Count of miRNA genes:	97
Interacting mature miRNAs:	106
Transcripts:	ENSRNOT00000045135
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		2	2	2		2			14	10	21
Low	3	30	45	29	19	29	2	4	59	22	20	11	2
Below cutoff		11	10	10		10	6	7	1	3			6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001130494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005486588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC119473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000045135 ⟹ ENSRNOP00000047177

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	108,423,455 - 108,430,619 (-)	Ensembl
Rnor_6.0 Ensembl	7	117,763,783 - 117,773,134 (-)	Ensembl

RefSeq Acc Id:

NM_001130494 ⟹ NP_001123966

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	108,423,455 - 108,430,619 (-)	NCBI
Rnor_6.0	7	117,765,892 - 117,773,056 (-)	NCBI
Rnor_5.0	7	117,753,871 - 117,761,090 (-)	NCBI
RGSC_v3.4	7	114,752,863 - 114,760,027 (-)	RGD
Celera	7	104,773,347 - 104,780,504 (-)	RGD

Sequence:

show sequence

GCGGGATATTCCTTAAACTCAAGCCCGGGCTGCCATGGAGCGGCTTGCGACCGTTCGCGCGTGG
CTGCAGGATTGGGAACGCGCTTTTGTACGGCTGCACGGGCGACGGCCAGCAAAGGAGGATGTGG
AGGCGGCACCCGAGGAGACCCGCGCGCTCTACCGTGAGTACCGTAACCTAAAGCAGGCAGTGAG
TCAGGCCGACGACGGACACCGCGTCCAAAAGCAATCACTTGCCAAGGCAGCTGAGGAGGAACAG
GAGCCAAGCTGCTGGGGTTCCCACCTGAACCGAGCTGCAACCCAGAACACACAGTCTATTCCAA
AGCAGAGCCCACTGAGTTCTATACAAGACTATGGGAAGAGGCTCAAAGCCAATCTTAAAAACAC
ACTACAGGGCGGGCCAACCCTGAGTCGAAAACTCCAGCATCAGAAGAGATCCTTGTCCATAGTG
CCCACATCAAGGCCACCAGGCCCAAGGACTGAATCCCCCTGTCCAGAACAAGCTAATGATGCTC
TTCCCCAGGTTCCTGTGCCCCAGCCAAGGCAAGGCCAACTCCAGAAGCTCCAGTCATCCCTGAG
CCTGAGGTTGAGTTCCCTAGACCCTGGTTGGTTAGAGAGGTGTCAAAACAGAGTTTCAGATCCT
CTAGAGGTTCCAGGTGCTTGTGGGCTTGACCTGAGTGCAAAGGAGTCACAACCTCAGATGTCAG
GCAAGGTGAATGTCATTAGTCCTGACATCCTTTCAGAAGTATCTTCACAGAGCCCACAGGCCCT
AGCCCAACAGCCAGCCCAAGTTTTGTCACAGATCCCCAAATCCAGCAACAGTAAAGACAGGAAG
CGGAAACGGAATGAGAAGGGGGAGGACTTTGCACAAGCCCAGCCCAGCAGCCAAGCAGGACCCC
TGTCTGAGGGAGCTGGGGCTACAGCACATGGGCAAGGCCCTCCAGGAGAACCCACACAAGTGAC
TGTCCCTCAGCACCGCTGCTCTTCAAACCAGGCCAGGACAGAGAATGCTAAGAGTGCGGCCCAC
CTCCCCATGTCCCCTCGGCCAGCTTCCCTAGACAGAGGGAACTATGTTCGACTTAACATGAAAA
CCAAATGCTTTGTACGAGTTGGGGCCAGTCGGGGCAGGCTTCTCCGAAAGCAGGTATGGAAGCA
AAAGTGGAAGAAGAAACAAGAGTGGTTTGGGAAAAGTGGACCCAGGGCCACAGTCAAGGACACT
TGTTTCCGGTGTGGGCAGTTTGGTCACTGGGCATCCCAGTGTTCCCAACCAGGCTCCACCCTGA
CCATCCAGCCAAAAGGTGACAGGAATGACAAACATCCCATTTCCACGTTGGGGGGAGTAGCACA
GAAGACTGGCACCACTTCCTGTAACCACTCTGGTGAGGAAACTGAACCTGCTGGACCAGTGCTA
CCGGTGCCTCATTGCCCCACGCCAGTGTTACCCCTCTACCCACCAGGGCCCTTGGGACAGGTAG
CAGACACCCCTGCTGAGGTATTCCAAGTCCTGGAGCAGCTAGGGCACCACACCTTCCGCCCTGG
GCAAGAGCGTGCTGTCATGAGGATTCTTTCTGGCATCTCCACACTGTTAGTGTTGCCCACGGGT
GCTGGCAAGTCTCTGTGCTACCAGCTTCCTGCACTGCTCTATGCCAAGCGAAGCCCCTGTCTCA
CACTGGTCGTCTCTCCTCTCCTGTCACTCATGGATGACCAGGTGTCTGATCTGCCTTCATGTCT
GAAGGCGGCCTGCCTCCACTCAGGAATGACCAAGAAACAACGAGAATCTGTCTTGAAGAAGGTA
CGGGCAGCCCAGGTGCATGTGCTGATTGTGTCCCCAGAGGCCTTGGTGGGATGCGGGGCTAAGG
GTCCTGCCAACCTCCCCCCGGCCGCTCAGCTGCCTCCAGTCGCCTTTGCCTGCATTGATGAGGT
CCACTGCCTCTCTCAGTGGTCACATAACTTCCGGCCCTGCTACTTACGTGTTTGTAAAGTACTT
CGGGAGCATATGGGTGTGCGCTGCTTTTTGGGTCTCACAGCCACAGCCACACGAAGCACTGCTC
GTGATGTGGCCCAGCACCTGGGCATAGCTGAAGAGCTTGAGGTCAGTGGGTCAGCCAGCATCCC
TGCCAATCTGCACCTCTCCGTGTCCATGGATCGAGACTCAGACCAGGCTCTGGTGACACTGCTA
CAAGGTGACCGCTTCCGTACCCTGGATTCGATTATCATTTACTGTGCTCGACGAAAGGACACAG
AGCGGGTGGCTGCCCTCCTCCGGACCTGCCTGTCCACAGTGAGAGATTCAAAGCCAAGAGGCCG
TGGCCCTGAGACTTTAGCGGAAGCATACCATGCTGGCATGTGTAGCCAGGAACGGAAACGAGTA
CAACAGGCCTTCATGCAGGGCCACCTGCGCATGGTAGTGGCCACAGTGGCATTTGGGATGGGAC
TGGACCGTCCAGATGTTCGGGCTGTGCTACACCTGGGACTGCCTCCAAGCTTCGAGAGCTACGT
GCAAGCTATTGGCCGTGCAGGACGTGATGGGAAGCCTGCCCATTGCCACCTGTTCCTGCATCCT
CAGGGTGAAGACCTCTGGGAACTGAGCAGACATGTCCATGCTGATAGCACTGACTTCCTGGCTG
TGAAGAAGCTGGTACAGCGTGTGTTCCCAGCCTGCTCATGCGCCCAGAGGCCTATGTCCCCACT
TGAGGAAGTCAAAGAGCACAGTGGCCAACAAACATACCCTGTACTGGGACTAGCCTGCCGGGGC
CATAAGCGGGCACTCCCAGTGCAGTCTACAGTACTGGCTCTGGACATGAAAGAGGAGGCCATTG
AGACTTTGCTGTGCTATTTGGAACTACACCCTCGGCACTGGTTGGAGCTGCTGCCATACACCTA
TGCCCACTGCCATCTGCGTTGCCCTGGGGGCAGTGCCCAGCTGCAAGCTCTGGTCCACAGGTGT
CCCCCTTTGGCTGCATGCTGGGCCAAGTGGCCACCTAAAGACACAAGTCAGGGTAGCAGCGCCT
TAGAGTTTGATGTGGTGGAACTGGCAGACTCCATGGGCTGGGAGTTGGCCTCTGTACGGCAGGC
TCTCCACCAGCTGAAGTGGGACCCAGAGCCAAAGAAAGGTGCACCACAGGGCACAGGAGTGCTT
GTGGAGTTCAGTGAGTTGGCCTTTCACCTGCACAGTCGTGGGGACCTGACAGATGAGGAGAAGG
ACCAGATCTGTGACTTTCTGTACAGCCGTGTGCAGGCTCGTGAACACAAGGCCCTGGCCCACCT
ACACCAAATGTCCAAGGCCTTTCAAAGTGTAGCATTTCCCAGTTGTGGACCCTGTTTAGAGCAG
TCTGACGAGGGGCACAGCAATCGGGTGAAGACCCTGGTCAGCTACTACTTTGAGGAGGAGGAGG
AGGAGGAAGAGGAAGAAACTATGAAGGATACTCAGGATCCAAAACCTGGGCAGACCCAGCTTCA
GGATTGGGAGGACCAAGTTCGCCGCGATGTCCACCAGCTCCTGTCCCTGAGGCCAGAAGAAAAG
TTTTCAGGAAGGGCTGTGGCCCGCATCTTCCATGGAATTGCAAGTCCATGCTACCCAGCCCAGG
TGTTTGGGCAGGACCGGCGCTTCTGGAGAAAGTACCTACACCTGGACTTCCACGCCCTCATGCA
CCTAGCCACAGAGGAGCTCCTGCTCAGAGGCCGATGACCACCAAACATGGGAGGGGCTACATGA
GGGGGCATGGGGCAAGCCAGACTGCCACTCCACAGAGGCTGTCAGGCTCACCAAGGCAATGATG
TGGCCATCACTGACTGTTAGGCAGAACCTTCTGGCTGCAGGAAGGGGATAAGAAGATCCAAAAT
ACAGATAAAGAGCCTTCAGT

hide sequence

RefSeq Acc Id:

XM_006241806 ⟹ XP_006241868

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	108,423,453 - 108,430,790 (-)	NCBI
Rnor_6.0	7	117,765,894 - 117,773,128 (-)	NCBI
Rnor_5.0	7	117,753,871 - 117,761,090 (-)	NCBI

Sequence:

show sequence

TCAAAGAATGTGCGCACCGCCCAGCGCCGCCTGTCGTCAGTTCTCATTGGCTAAGAACAGGACG
TTAGGACCGCGGGATATTCCTTAAACTCAAGCCCGGGCTGCCATGGAGCGGCTTGCGACCGTTC
GCGCGCGGCTGCAGGATTGGGAACGCGCTTTTGTACGGCTGCACGGGCGACGGCCAGCAAAGGA
GGATGTGGAGGCGGCACCCGAGGAGACCCGCGCGCTCTACCGTGAGTACCGTAACCTAAAGCAG
GCAGTGAGTCAGGCCGACGACGGACACCGCGTCCAAAAGCAATCACTTGCCAAGGCAGCTGAGG
AGGAACAGGAGCCAAGCTGCTGGGGTTCCCACCTGAACCGAGCTGCAACCCAGAACACACAGTC
TATTCCAAAGCAGAGCCCACTGAGTTCTATACAAGACTATGGGAAGAGGCTCAAAGCCAATCTT
AAAAACACACTACAGGGCGGGCCAACCCTGAGTCGAAAACTCCAGCATCAGAAGAGATCCTTGT
CCATAGTGCCCACATCAAGGCCACCAGGCCCAAGGACTGAATCCCCCTGTCCAGAACAAGCTAA
TGATGCTCTTCCCCAGGTTCCTGTGCCCCAGCCAAGGCAAGGCCAACTCCAGAAGCTCCAGTCA
TCCCTGAGCCTGAGGTTGAGTTCCCTAGACCCTGGTTGGTTAGAGAGGTGTCAAAACAGAGTTT
CAGATCCTCTAGAGGTTCCAGGTGCTTGTGGGCTTGACCTGAGTGCAAAGGAGTCACAACCTCA
GATGTCAGGCAAGGTGAATGTCATTAGTCCTGACATCCTTTCAGAAGTATCTTCACAGAGCCCA
CAGGCCCTAGCCCAACAGCCAGCCCAAGTTTTGTCACAGATCCCCAAATCCAGCAACAGTAAAG
ACAGGAAGCGGAAACGGAATGAGAAGGGGGAGGACTTTGCACAAGCCCAGCCCAGCAGCCAAGC
AGGACCCCTGTCTGAGGGAGCTGGGGCTACAGCACATGGGCAAGGCCCTCCAGGAGAACCCACA
CAAGTGACTGTCCCTCAGCACCGCTGCTCTTCAAACCAGGCCAGGACAGAGAATGCTAAGAGTG
CGGCCCACCTCCCCATGTCCCCTCGGCCAGCTTCCCTAGACAGAGGGAACTATGTTCGACTTAA
CATGAAAACCAAATGCTTTGTACGAGTTGGGGCCAGTCGGGGCAGGCTTCTCCGAAAGCAGGTA
TGGAAGCAAAAGTGGAAGAAGAAACAAGAGTGGTTTGGGAAAAGTGGACCCAGGGCCACAGTCA
AGGACACTTGTTTCCGGTGTGGGCAGTTTGGTCACTGGGCATCCCAGTGTTCCCAACCAGGCTC
CACCCTGACCATCCAGCCAAAAGGTGACAGGAATGACAAACATCCCATTTCCACGTTGGGGGGA
GTAGCACAGAAGACTGGCACCACTTCCTGTAACCACTCTGCAGGTGAGGAAACTGAACCTGCTG
GACCAGTGCTACCGGTGCCTCATTGCCCCACGCCAGTGTTACCCCTCTACCCACCAGGGCCCTT
GGGACAGGTAGCAGACACCCCTGCTGAGGTATTCCAAGTCCTGGAGCAGCTAGGGCACCACACC
TTCCGCCCTGGGCAAGAGCGTGCTGTCATGAGGATTCTTTCTGGCATCTCCACACTGTTAGTGT
TGCCCACGGGTGCTGGCAAGTCTCTGTGCTACCAGCTTCCTGCACTGCTCTATGCCAAGCGAAG
CCCCTGTCTCACACTGGTCGTCTCTCCTCTCCTGTCACTCATGGATGACCAGGTGTCTGATCTG
CCTTCATGTCTGAAGGCGGCCTGCCTCCACTCAGGAATGACCAAGAAACAACGAGAATCTGTCT
TGAAGAAGGTACGGGCAGCCCAGGTGCATGTGCTGATTGTGTCCCCAGAGGCCTTGGTGGGATG
CGGGGCTAAGGGTCCTGCCAACCTCCCCCCGGCCGCTCAGCTGCCTCCAGTCGCCTTTGCCTGC
ATTGATGAGGTCCACTGCCTCTCTCAGTGGTCACATAACTTCCGGCCCTGCTACTTACGTGTTT
GTAAAGTACTTCGGGAGCATATGGGTGTGCGCTGCTTTTTGGGTCTCACAGCCACAGCCACACG
AAGCACTGCTCGTGATGTGGCCCAGCACCTGGGCATAGCTGAAGAGCTTGAGGTCAGTGGGTCA
GCCAGCATCCCTGCCAATCTGCACCTCTCCGTGTCCATGGATCGAGACTCAGACCAGGCTCTGG
TGACACTGCTACAAGGTGACCGCTTCCGTACCCTGGATTCGATTATCATTTACTGTGCTCGACG
AAAGGACACAGAGCGGGTGGCTGCCCTCCTCCGGACCTGCCTGTCCACAGTGAGAGATTCAAAG
CCAAGAGGCCGTGGCCCTGAGACTTTAGCGGAAGCATACCATGCTGGCATGTGTAGCCAGGAAC
GGAAACGAGTACAACAGGCCTTCATGCAGGGCCACCTGCGCATGGTAGTGGCCACAGTGGCATT
TGGGATGGGACTGGACCGTCCAGATGTTCGGGCTGTGCTACACCTGGGACTGCCTCCAAGCTTC
GAGAGCTACGTGCAAGCTATTGGCCGTGCAGGACGTGATGGGAAGCCTGCCCATTGCCACCTGT
TCCTGCATCCTCAGGGTGAAGACCTCTGGGAACTGAGCAGACATGTCCATGCTGATAGCACTGA
CTTCCTGGCTGTGAAGAAGCTGGTACAGCGTGTGTTCCCAGCCTGCTCATGCGCCCAGAGGCCT
ATGTCCCCACTTGAGGAAGTCAAAGAGCACAGTGGCCAACAAACATACCCTGTACTGGGACTAG
CCTGCCGGGGCCATAAGCGGGCACTCCCAGTGCAGTCTACAGTACTGGCTCTGGACATGAAAGA
GGAGGCCATTGAGACTTTGCTGTGCTATTTGGAACTACACCCTCGGCACTGGTTGGAGCTGCTG
CCATACACCTATGCCCACTGCCATCTGCGTTGCCCTGGGGGCAGTGCCCAGCTGCAAGCTCTGG
TCCACAGGTGTCCCCCTTTGGCTGCATGCTGGGCCAAGTGGCCACCTAAAGACACAAGTCAGGG
TAGCAGCGCCTTAGAGTTTGATGTGGTGGAACTGGCAGACTCCATGGGCTGGGAGTTGGCCTCT
GTACGGCAGGCTCTCCACCAGCTGAAGTGGGACCCAGAGCCAAAGAAAGGTGCACCACAGGGCA
CAGGAGTGCTTGTGGAGTTCAGTGAGTTGGCCTTTCACCTGCACAGTCGTGGGGACCTGACAGA
TGAGGAGAAGGACCAGATCTGTGACTTTCTGTACAGCCGTGTGCAGGCTCGTGAACACAAGGCC
CTGGCCCACCTACACCAAATGTCCAAGGCCTTTCAAAGTGTAGCATTTCCCAGTTGTGGACCCT
GTTTAGAGCAGTCTGACGAGGGGCACAGCAATCGGGTGAAGACCCTGGTCAGCTACTACTTTGA
GGAGGAGGAGGAGGAGGAAGAGGAAGAAACTATGAAGGATACTCAGGATCCAAAACCTGGGCAG
ACCCAGCTTCAGGATTGGGAGGACCAAGTTCGCCGCGATGTCCACCAGCTCCTGTCCCTGAGGC
CAGAAGAAAAGTTTTCAGGAAGGGCTGTGGCCCGCATCTTCCATGGAATTGCAAGTCCATGCTA
CCCAGCCCAGGTGTTTGGGCAGGACCGGCGCTTCTGGAGAAAGTACCTACACCTGGACTTCCAC
GCCCTCATGCACCTAGCCACAGAGGAGCTCCTGCTCAGAGGCCGATGACCACCAAACATGGGAG
GGGCTACATGAGGGGGCATGGGGCAAGCCAGACTGCCACTCCACAGAGGCTGTCAGGCTCACCA
AGGCAATGATGTGGCCATCACTGACTGTTAGGCAGAACCTTCTGGCTGCAGGAAGGGGATAAGA
AGATCCAAAATACAGATAAAGAGCCTTCA

hide sequence

RefSeq Acc Id:

XM_008765566 ⟹ XP_008763788

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	108,423,453 - 108,430,790 (-)	NCBI
Rnor_6.0	7	117,765,894 - 117,773,128 (-)	NCBI

Sequence:

show sequence

TCAAAGAATGTGCGCACCGCCCAGCGCCGCCTGTCGTCAGTTCTCATTGGCTAAGAACAGGACG
TTAGGACCGCGGGATATTCCTTAAACTCAAGCCCGGGCTGCCATGGAGCGGCTTGCGACCGTTC
GCGCGCGGCTGCAGGATTGGGAACGCGCTTTTGTACGGCTGCACGGGCGACGGCCAGCAAAGGA
GGATGTGGAGGCGGCACCCGAGGAGACCCGCGCGCTCTACCGTGAGTACCGTAACCTAAAGCAG
GCAGTGAGTCAGGCCGACGACGGACACCGCGTCCAAAAGCAATCACTTGCCAAGGCAGCTGAGG
AGGAACAGGAGCCAAGCTGCTGGGGTTCCCACCTGAACCGAGCTGCAACCCAGAACACACAGTC
TATTCCAAAGCAGAGCCCACTGAGTTCTATACAAGACTATGGGAAGAGGCTCAAAGCCAATCTT
AAAAACACACTACAGGGCGGGCCAACCCTGAGTCGAAAACTCCAGCATCAGAAGAGATCCTTGT
CCATAGTGCCCACATCAAGGCCACCAGGCCCAAGGACTGAATCCCCCTGTCCAGAACAAGCTAA
TGATGCTCTTCCCCAGGTTCCTGTGCCCCAGCCAAGGCAAGGCCAACTCCAGAAGCTCCAGTCA
TCCCTGAGCCTGAGGTTGAGTTCCCTAGACCCTGGTTGGTTAGAGAGGTGTCAAAACAGAGTTT
CAGATCCTCTAGAGGTTCCAGGTGCTTGTGGGCTTGACCTGAGTGCAAAGGAGTCACAACCTCA
GATGTCAGGCAAGGTGAATGTCATTAGTCCTGACATCCTTTCAGAAGTATCTTCACAGAGCCCA
CAGGCCCTAGCCCAACAGCCAGCCCAAGTTTTGTCACAGATCCCCAAATCCAGCAACAGTAAAG
ACAGGAAGCGGAAACGGAATGAGAAGGGGGAGGACTTTGCACAAGCCCAGCCCAGCAGCCAAGC
AGGACCCCTGTCTGAGGGAGCTGGGGCTACAGCACATGGGCAAGGCCCTCCAGGAGAACCCACA
CAAGTGACTGTCCCTCAGCACCGCTGCTCTTCAAACCAGGCCAGGACAGAGAATGCTAAGAGTG
CGGCCCACCTCCCCATGTCCCCTCGGCCAGCTTCCCTAGACAGAGGGAACTATGTTCGACTTAA
CATGAAAACCAAATGCTTTGTACGAGTTGGGGCCAGTCGGGGCAGGCTTCTCCGAAAGCAGGTA
TGGAAGCAAAAGTGGAAGAAGAAACAAGAGTGGTTTGGGAAAAGTGGACCCAGGGCCACAGTCA
AGGACACTTGTTTCCGGTGTGGGCAGTTTGGTCACTGGGCATCCCAGTGTTCCCAACCAGCTCT
TAACCCTGGTCCAGGCTCCACCCTGACCATCCAGCCAAAAGGTGACAGGAATGACAAACATCCC
ATTTCCACGTTGGGGGGAGTAGCACAGAAGACTGGCACCACTTCCTGTAACCACTCTGCAGGTG
AGGAAACTGAACCTGCTGGACCAGTGCTACCGGTGCCTCATTGCCCCACGCCAGTGTTACCCCT
CTACCCACCAGGGCCCTTGGGACAGGTAGCAGACACCCCTGCTGAGGTATTCCAAGTCCTGGAG
CAGCTAGGGCACCACACCTTCCGCCCTGGGCAAGAGCGTGCTGTCATGAGGATTCTTTCTGGCA
TCTCCACACTGTTAGTGTTGCCCACGGGTGCTGGCAAGTCTCTGTGCTACCAGCTTCCTGCACT
GCTCTATGCCAAGCGAAGCCCCTGTCTCACACTGGTCGTCTCTCCTCTCCTGTCACTCATGGAT
GACCAGGTGTCTGATCTGCCTTCATGTCTGAAGGCGGCCTGCCTCCACTCAGGAATGACCAAGA
AACAACGAGAATCTGTCTTGAAGAAGGTACGGGCAGCCCAGGTGCATGTGCTGATTGTGTCCCC
AGAGGCCTTGGTGGGATGCGGGGCTAAGGGTCCTGCCAACCTCCCCCCGGCCGCTCAGCTGCCT
CCAGTCGCCTTTGCCTGCATTGATGAGGTCCACTGCCTCTCTCAGTGGTCACATAACTTCCGGC
CCTGCTACTTACGTGTTTGTAAAGTACTTCGGGAGCATATGGGTGTGCGCTGCTTTTTGGGTCT
CACAGCCACAGCCACACGAAGCACTGCTCGTGATGTGGCCCAGCACCTGGGCATAGCTGAAGAG
CTTGAGGTCAGTGGGTCAGCCAGCATCCCTGCCAATCTGCACCTCTCCGTGTCCATGGATCGAG
ACTCAGACCAGGCTCTGGTGACACTGCTACAAGGTGACCGCTTCCGTACCCTGGATTCGATTAT
CATTTACTGTGCTCGACGAAAGGACACAGAGCGGGTGGCTGCCCTCCTCCGGACCTGCCTGTCC
ACAGTGAGAGATTCAAAGCCAAGAGGCCGTGGCCCTGAGACTTTAGCGGAAGCATACCATGCTG
GCATGTGTAGCCAGGAACGGAAACGAGTACAACAGGCCTTCATGCAGGGCCACCTGCGCATGGT
AGTGGCCACAGTGGCATTTGGGATGGGACTGGACCGTCCAGATGTTCGGGCTGTGCTACACCTG
GGACTGCCTCCAAGCTTCGAGAGCTACGTGCAAGCTATTGGCCGTGCAGGACGTGATGGGAAGC
CTGCCCATTGCCACCTGTTCCTGCATCCTCAGGGTGAAGACCTCTGGGAACTGAGCAGACATGT
CCATGCTGATAGCACTGACTTCCTGGCTGTGAAGAAGCTGGTACAGCGTGTGTTCCCAGCCTGC
TCATGCGCCCAGAGGCCTATGTCCCCACTTGAGGAAGTCAAAGAGCACAGTGGCCAACAAACAT
ACCCTGTACTGGGACTAGCCTGCCGGGGCCATAAGCGGGCACTCCCAGTGCAGTCTACAGTACT
GGCTCTGGACATGAAAGAGGAGGCCATTGAGACTTTGCTGTGCTATTTGGAACTACACCCTCGG
CACTGGTTGGAGCTGCTGCCATACACCTATGCCCACTGCCATCTGCGTTGCCCTGGGGGCAGTG
CCCAGCTGCAAGCTCTGGTCCACAGGTGTCCCCCTTTGGCTGCATGCTGGGCCAAGTGGCCACC
TAAAGACACAAGTCAGGGTAGCAGCGCCTTAGAGTTTGATGTGGTGGAACTGGCAGACTCCATG
GGCTGGGAGTTGGCCTCTGTACGGCAGGCTCTCCACCAGCTGAAGTGGGACCCAGAGCCAAAGA
AAGGTGCACCACAGGGCACAGGAGTGCTTGTGGAGTTCAGTGAGTTGGCCTTTCACCTGCACAG
TCGTGGGGACCTGACAGATGAGGAGAAGGACCAGATCTGTGACTTTCTGTACAGCCGTGTGCAG
GCTCGTGAACACAAGGCCCTGGCCCACCTACACCAAATGTCCAAGGCCTTTCAAAGTGTAGCAT
TTCCCAGTTGTGGACCCTGTTTAGAGCAGTCTGACGAGGGGCACAGCAATCGGGTGAAGACCCT
GGTCAGCTACTACTTTGAGGAGGAGGAGGAGGAGGAAGAGGAAGAAACTATGAAGGATACTCAG
GATCCAAAACCTGGGCAGACCCAGCTTCAGGATTGGGAGGACCAAGTTCGCCGCGATGTCCACC
AGCTCCTGTCCCTGAGGCCAGAAGAAAAGTTTTCAGGAAGGGCTGTGGCCCGCATCTTCCATGG
AATTGCAAGTCCATGCTACCCAGCCCAGGTGTTTGGGCAGGACCGGCGCTTCTGGAGAAAGTAC
CTACACCTGGACTTCCACGCCCTCATGCACCTAGCCACAGAGGAGCTCCTGCTCAGAGGCCGAT
GACCACCAAACATGGGAGGGGCTACATGAGGGGGCATGGGGCAAGCCAGACTGCCACTCCACAG
AGGCTGTCAGGCTCACCAAGGCAATGATGTGGCCATCACTGACTGTTAGGCAGAACCTTCTGGC
TGCAGGAAGGGGATAAGAAGATCCAAAATACAGATAAAGAGCCTTCA

hide sequence

RefSeq Acc Id:

XM_008765567 ⟹ XP_008763789

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	108,423,453 - 108,430,790 (-)	NCBI
Rnor_6.0	7	117,765,894 - 117,773,128 (-)	NCBI

Sequence:

show sequence

TCAAAGAATGTGCGCACCGCCCAGCGCCGCCTGTCGTCAGTTCTCATTGGCTAAGAACAGGACG
TTAGGACCGCGGGATATTCCTTAAACTCAAGCCCGGGCTGCCATGGAGCGGCTTGCGACCGTTC
GCGCGCGGCTGCAGGATTGGGAACGCGCTTTTGTACGGCTGCACGGGCGACGGCCAGCAAAGGA
GGATGTGGAGGCGGCACCCGAGGAGACCCGCGCGCTCTACCGTGAGTACCGTAACCTAAAGCAG
GCAGTGAGTCAGGCCGACGACGGACACCGCGTCCAAAAGCAATCACTTGCCAAGGCAGCTGAGG
AGGAACAGGAGCCAAGCTGCTGGGGTTCCCACCTGAACCGAGCTGCAACCCAGAACACACAGTC
TATTCCAAAGCAGAGCCCACTGAGTTCTATACAAGACTATGGGAAGAGGCTCAAAGCCAATCTT
AAAAACACACTACAGGGCGGGCCAACCCTGAGTCGAAAACTCCAGCATCAGAAGAGATCCTTGT
CCATAGTGCCCACATCAAGGCCACCAGGCCCAAGGACTGAATCCCCCTGTCCAGAACAAGCTAA
TGATGCTCTTCCCCAGGTTCCTGTGCCCCAGCCAAGGCAAGGCCAACTCCAGAAGCTCCAGTCA
TCCCTGAGCCTGAGGTTGAGTTCCCTAGACCCTGGTTGGTTAGAGAGGTGTCAAAACAGAGTTT
CAGATCCTCTAGAGGTTCCAGGTGCTTGTGGGCTTGACCTGAGTGCAAAGGAGTCACAACCTCA
GATGTCAGGCAAGGTGAATGTCATTAGTCCTGACATCCTTTCAGAAGTATCTTCACAGAGCCCA
CAGGCCCTAGCCCAACAGCCAGCCCAAGTTTTGTCACAGATCCCCAAATCCAGCAACAGTAAAG
ACAGGAAGCGGAAACGGAATGAGAAGGGGGAGGACTTTGCACAAGCCCAGCCCAGCAGCCAAGC
AGGACCCCTGTCTGAGGGAGCTGGGGCTACAGCACATGGGCAAGGCCCTCCAGGAGAACCCACA
CAAGTGACTGTCCCTCAGCACCGCTGCTCTTCAAACCAGGCCAGGACAGAGAATGCTAAGAGTG
CGGCCCACCTCCCCATGTCCCCTCGGCCAGCTTCCCTAGACAGAGGGAACTATGTTCGACTTAA
CATGAAAACCAAATGCTTTGTACGAGTTGGGGCCAGTCGGGGCAGGCTTCTCCGAAAGCAGGTA
TGGAAGCAAAAGTGGAAGAAGAAACAAGAGTGGTTTGGGAAAAGTGGACCCAGGGCCACAGTCA
AGGACACTTGTTTCCGGTGTGGGCAGTTTGGTCACTGGGCATCCCAGTGTTCCCAACCAGCTCT
TAACCCTGGTCCAGGCTCCACCCTGACCATCCAGCCAAAAGGTGACAGGAATGACAAACATCCC
ATTTCCACGTTGGGGGGAGTAGCACAGAAGACTGGCACCACTTCCTGTAACCACTCTGGTGAGG
AAACTGAACCTGCTGGACCAGTGCTACCGGTGCCTCATTGCCCCACGCCAGTGTTACCCCTCTA
CCCACCAGGGCCCTTGGGACAGGTAGCAGACACCCCTGCTGAGGTATTCCAAGTCCTGGAGCAG
CTAGGGCACCACACCTTCCGCCCTGGGCAAGAGCGTGCTGTCATGAGGATTCTTTCTGGCATCT
CCACACTGTTAGTGTTGCCCACGGGTGCTGGCAAGTCTCTGTGCTACCAGCTTCCTGCACTGCT
CTATGCCAAGCGAAGCCCCTGTCTCACACTGGTCGTCTCTCCTCTCCTGTCACTCATGGATGAC
CAGGTGTCTGATCTGCCTTCATGTCTGAAGGCGGCCTGCCTCCACTCAGGAATGACCAAGAAAC
AACGAGAATCTGTCTTGAAGAAGGTACGGGCAGCCCAGGTGCATGTGCTGATTGTGTCCCCAGA
GGCCTTGGTGGGATGCGGGGCTAAGGGTCCTGCCAACCTCCCCCCGGCCGCTCAGCTGCCTCCA
GTCGCCTTTGCCTGCATTGATGAGGTCCACTGCCTCTCTCAGTGGTCACATAACTTCCGGCCCT
GCTACTTACGTGTTTGTAAAGTACTTCGGGAGCATATGGGTGTGCGCTGCTTTTTGGGTCTCAC
AGCCACAGCCACACGAAGCACTGCTCGTGATGTGGCCCAGCACCTGGGCATAGCTGAAGAGCTT
GAGGTCAGTGGGTCAGCCAGCATCCCTGCCAATCTGCACCTCTCCGTGTCCATGGATCGAGACT
CAGACCAGGCTCTGGTGACACTGCTACAAGGTGACCGCTTCCGTACCCTGGATTCGATTATCAT
TTACTGTGCTCGACGAAAGGACACAGAGCGGGTGGCTGCCCTCCTCCGGACCTGCCTGTCCACA
GTGAGAGATTCAAAGCCAAGAGGCCGTGGCCCTGAGACTTTAGCGGAAGCATACCATGCTGGCA
TGTGTAGCCAGGAACGGAAACGAGTACAACAGGCCTTCATGCAGGGCCACCTGCGCATGGTAGT
GGCCACAGTGGCATTTGGGATGGGACTGGACCGTCCAGATGTTCGGGCTGTGCTACACCTGGGA
CTGCCTCCAAGCTTCGAGAGCTACGTGCAAGCTATTGGCCGTGCAGGACGTGATGGGAAGCCTG
CCCATTGCCACCTGTTCCTGCATCCTCAGGGTGAAGACCTCTGGGAACTGAGCAGACATGTCCA
TGCTGATAGCACTGACTTCCTGGCTGTGAAGAAGCTGGTACAGCGTGTGTTCCCAGCCTGCTCA
TGCGCCCAGAGGCCTATGTCCCCACTTGAGGAAGTCAAAGAGCACAGTGGCCAACAAACATACC
CTGTACTGGGACTAGCCTGCCGGGGCCATAAGCGGGCACTCCCAGTGCAGTCTACAGTACTGGC
TCTGGACATGAAAGAGGAGGCCATTGAGACTTTGCTGTGCTATTTGGAACTACACCCTCGGCAC
TGGTTGGAGCTGCTGCCATACACCTATGCCCACTGCCATCTGCGTTGCCCTGGGGGCAGTGCCC
AGCTGCAAGCTCTGGTCCACAGGTGTCCCCCTTTGGCTGCATGCTGGGCCAAGTGGCCACCTAA
AGACACAAGTCAGGGTAGCAGCGCCTTAGAGTTTGATGTGGTGGAACTGGCAGACTCCATGGGC
TGGGAGTTGGCCTCTGTACGGCAGGCTCTCCACCAGCTGAAGTGGGACCCAGAGCCAAAGAAAG
GTGCACCACAGGGCACAGGAGTGCTTGTGGAGTTCAGTGAGTTGGCCTTTCACCTGCACAGTCG
TGGGGACCTGACAGATGAGGAGAAGGACCAGATCTGTGACTTTCTGTACAGCCGTGTGCAGGCT
CGTGAACACAAGGCCCTGGCCCACCTACACCAAATGTCCAAGGCCTTTCAAAGTGTAGCATTTC
CCAGTTGTGGACCCTGTTTAGAGCAGTCTGACGAGGGGCACAGCAATCGGGTGAAGACCCTGGT
CAGCTACTACTTTGAGGAGGAGGAGGAGGAGGAAGAGGAAGAAACTATGAAGGATACTCAGGAT
CCAAAACCTGGGCAGACCCAGCTTCAGGATTGGGAGGACCAAGTTCGCCGCGATGTCCACCAGC
TCCTGTCCCTGAGGCCAGAAGAAAAGTTTTCAGGAAGGGCTGTGGCCCGCATCTTCCATGGAAT
TGCAAGTCCATGCTACCCAGCCCAGGTGTTTGGGCAGGACCGGCGCTTCTGGAGAAAGTACCTA
CACCTGGACTTCCACGCCCTCATGCACCTAGCCACAGAGGAGCTCCTGCTCAGAGGCCGATGAC
CACCAAACATGGGAGGGGCTACATGAGGGGGCATGGGGCAAGCCAGACTGCCACTCCACAGAGG
CTGTCAGGCTCACCAAGGCAATGATGTGGCCATCACTGACTGTTAGGCAGAACCTTCTGGCTGC
AGGAAGGGGATAAGAAGATCCAAAATACAGATAAAGAGCCTTCA

hide sequence

RefSeq Acc Id:

XM_039078831 ⟹ XP_038934759

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	108,423,453 - 108,430,790 (-)	NCBI

RefSeq Acc Id:

XM_039078832 ⟹ XP_038934760

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	108,423,453 - 108,430,790 (-)	NCBI

RefSeq Acc Id:

XM_039078833 ⟹ XP_038934761

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	108,423,453 - 108,430,790 (-)	NCBI

RefSeq Acc Id:

XR_005486588

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	108,423,843 - 108,430,790 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001123966	(Get FASTA)	NCBI Sequence Viewer
	XP_006241868	(Get FASTA)	NCBI Sequence Viewer
	XP_008763788	(Get FASTA)	NCBI Sequence Viewer
	XP_008763789	(Get FASTA)	NCBI Sequence Viewer
	XP_038934759	(Get FASTA)	NCBI Sequence Viewer
	XP_038934760	(Get FASTA)	NCBI Sequence Viewer
	XP_038934761	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM15943	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001123966 ⟸ NM_001130494

- Sequence:

show sequence

MERLATVRAWLQDWERAFVRLHGRRPAKEDVEAAPEETRALYREYRNLKQAVSQADDGHRVQKQ
SLAKAAEEEQEPSCWGSHLNRAATQNTQSIPKQSPLSSIQDYGKRLKANLKNTLQGGPTLSRKL
QHQKRSLSIVPTSRPPGPRTESPCPEQANDALPQVPVPQPRQGQLQKLQSSLSLRLSSLDPGWL
ERCQNRVSDPLEVPGACGLDLSAKESQPQMSGKVNVISPDILSEVSSQSPQALAQQPAQVLSQI
PKSSNSKDRKRKRNEKGEDFAQAQPSSQAGPLSEGAGATAHGQGPPGEPTQVTVPQHRCSSNQA
RTENAKSAAHLPMSPRPASLDRGNYVRLNMKTKCFVRVGASRGRLLRKQVWKQKWKKKQEWFGK
SGPRATVKDTCFRCGQFGHWASQCSQPGSTLTIQPKGDRNDKHPISTLGGVAQKTGTTSCNHSG
EETEPAGPVLPVPHCPTPVLPLYPPGPLGQVADTPAEVFQVLEQLGHHTFRPGQERAVMRILSG
ISTLLVLPTGAGKSLCYQLPALLYAKRSPCLTLVVSPLLSLMDDQVSDLPSCLKAACLHSGMTK
KQRESVLKKVRAAQVHVLIVSPEALVGCGAKGPANLPPAAQLPPVAFACIDEVHCLSQWSHNFR
PCYLRVCKVLREHMGVRCFLGLTATATRSTARDVAQHLGIAEELEVSGSASIPANLHLSVSMDR
DSDQALVTLLQGDRFRTLDSIIIYCARRKDTERVAALLRTCLSTVRDSKPRGRGPETLAEAYHA
GMCSQERKRVQQAFMQGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGK
PAHCHLFLHPQGEDLWELSRHVHADSTDFLAVKKLVQRVFPACSCAQRPMSPLEEVKEHSGQQT
YPVLGLACRGHKRALPVQSTVLALDMKEEAIETLLCYLELHPRHWLELLPYTYAHCHLRCPGGS
AQLQALVHRCPPLAACWAKWPPKDTSQGSSALEFDVVELADSMGWELASVRQALHQLKWDPEPK
KGAPQGTGVLVEFSELAFHLHSRGDLTDEEKDQICDFLYSRVQAREHKALAHLHQMSKAFQSVA
FPSCGPCLEQSDEGHSNRVKTLVSYYFEEEEEEEEEETMKDTQDPKPGQTQLQDWEDQVRRDVH
QLLSLRPEEKFSGRAVARIFHGIASPCYPAQVFGQDRRFWRKYLHLDFHALMHLATEELLLRGR

hide sequence

RefSeq Acc Id:

XP_006241868 ⟸ XM_006241806

- Peptide Label:

isoform X3

- Sequence:

show sequence

MERLATVRARLQDWERAFVRLHGRRPAKEDVEAAPEETRALYREYRNLKQAVSQADDGHRVQKQ
SLAKAAEEEQEPSCWGSHLNRAATQNTQSIPKQSPLSSIQDYGKRLKANLKNTLQGGPTLSRKL
QHQKRSLSIVPTSRPPGPRTESPCPEQANDALPQVPVPQPRQGQLQKLQSSLSLRLSSLDPGWL
ERCQNRVSDPLEVPGACGLDLSAKESQPQMSGKVNVISPDILSEVSSQSPQALAQQPAQVLSQI
PKSSNSKDRKRKRNEKGEDFAQAQPSSQAGPLSEGAGATAHGQGPPGEPTQVTVPQHRCSSNQA
RTENAKSAAHLPMSPRPASLDRGNYVRLNMKTKCFVRVGASRGRLLRKQVWKQKWKKKQEWFGK
SGPRATVKDTCFRCGQFGHWASQCSQPGSTLTIQPKGDRNDKHPISTLGGVAQKTGTTSCNHSA
GEETEPAGPVLPVPHCPTPVLPLYPPGPLGQVADTPAEVFQVLEQLGHHTFRPGQERAVMRILS
GISTLLVLPTGAGKSLCYQLPALLYAKRSPCLTLVVSPLLSLMDDQVSDLPSCLKAACLHSGMT
KKQRESVLKKVRAAQVHVLIVSPEALVGCGAKGPANLPPAAQLPPVAFACIDEVHCLSQWSHNF
RPCYLRVCKVLREHMGVRCFLGLTATATRSTARDVAQHLGIAEELEVSGSASIPANLHLSVSMD
RDSDQALVTLLQGDRFRTLDSIIIYCARRKDTERVAALLRTCLSTVRDSKPRGRGPETLAEAYH
AGMCSQERKRVQQAFMQGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDG
KPAHCHLFLHPQGEDLWELSRHVHADSTDFLAVKKLVQRVFPACSCAQRPMSPLEEVKEHSGQQ
TYPVLGLACRGHKRALPVQSTVLALDMKEEAIETLLCYLELHPRHWLELLPYTYAHCHLRCPGG
SAQLQALVHRCPPLAACWAKWPPKDTSQGSSALEFDVVELADSMGWELASVRQALHQLKWDPEP
KKGAPQGTGVLVEFSELAFHLHSRGDLTDEEKDQICDFLYSRVQAREHKALAHLHQMSKAFQSV
AFPSCGPCLEQSDEGHSNRVKTLVSYYFEEEEEEEEEETMKDTQDPKPGQTQLQDWEDQVRRDV
HQLLSLRPEEKFSGRAVARIFHGIASPCYPAQVFGQDRRFWRKYLHLDFHALMHLATEELLLRG
R

hide sequence

RefSeq Acc Id:

XP_008763789 ⟸ XM_008765567

- Peptide Label:

isoform X2

- Sequence:

show sequence

MERLATVRARLQDWERAFVRLHGRRPAKEDVEAAPEETRALYREYRNLKQAVSQADDGHRVQKQ
SLAKAAEEEQEPSCWGSHLNRAATQNTQSIPKQSPLSSIQDYGKRLKANLKNTLQGGPTLSRKL
QHQKRSLSIVPTSRPPGPRTESPCPEQANDALPQVPVPQPRQGQLQKLQSSLSLRLSSLDPGWL
ERCQNRVSDPLEVPGACGLDLSAKESQPQMSGKVNVISPDILSEVSSQSPQALAQQPAQVLSQI
PKSSNSKDRKRKRNEKGEDFAQAQPSSQAGPLSEGAGATAHGQGPPGEPTQVTVPQHRCSSNQA
RTENAKSAAHLPMSPRPASLDRGNYVRLNMKTKCFVRVGASRGRLLRKQVWKQKWKKKQEWFGK
SGPRATVKDTCFRCGQFGHWASQCSQPALNPGPGSTLTIQPKGDRNDKHPISTLGGVAQKTGTT
SCNHSGEETEPAGPVLPVPHCPTPVLPLYPPGPLGQVADTPAEVFQVLEQLGHHTFRPGQERAV
MRILSGISTLLVLPTGAGKSLCYQLPALLYAKRSPCLTLVVSPLLSLMDDQVSDLPSCLKAACL
HSGMTKKQRESVLKKVRAAQVHVLIVSPEALVGCGAKGPANLPPAAQLPPVAFACIDEVHCLSQ
WSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRSTARDVAQHLGIAEELEVSGSASIPANLHL
SVSMDRDSDQALVTLLQGDRFRTLDSIIIYCARRKDTERVAALLRTCLSTVRDSKPRGRGPETL
AEAYHAGMCSQERKRVQQAFMQGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGR
AGRDGKPAHCHLFLHPQGEDLWELSRHVHADSTDFLAVKKLVQRVFPACSCAQRPMSPLEEVKE
HSGQQTYPVLGLACRGHKRALPVQSTVLALDMKEEAIETLLCYLELHPRHWLELLPYTYAHCHL
RCPGGSAQLQALVHRCPPLAACWAKWPPKDTSQGSSALEFDVVELADSMGWELASVRQALHQLK
WDPEPKKGAPQGTGVLVEFSELAFHLHSRGDLTDEEKDQICDFLYSRVQAREHKALAHLHQMSK
AFQSVAFPSCGPCLEQSDEGHSNRVKTLVSYYFEEEEEEEEEETMKDTQDPKPGQTQLQDWEDQ
VRRDVHQLLSLRPEEKFSGRAVARIFHGIASPCYPAQVFGQDRRFWRKYLHLDFHALMHLATEE
LLLRGR

hide sequence

RefSeq Acc Id:

XP_008763788 ⟸ XM_008765566

- Peptide Label:

isoform X1

- Sequence:

show sequence

MERLATVRARLQDWERAFVRLHGRRPAKEDVEAAPEETRALYREYRNLKQAVSQADDGHRVQKQ
SLAKAAEEEQEPSCWGSHLNRAATQNTQSIPKQSPLSSIQDYGKRLKANLKNTLQGGPTLSRKL
QHQKRSLSIVPTSRPPGPRTESPCPEQANDALPQVPVPQPRQGQLQKLQSSLSLRLSSLDPGWL
ERCQNRVSDPLEVPGACGLDLSAKESQPQMSGKVNVISPDILSEVSSQSPQALAQQPAQVLSQI
PKSSNSKDRKRKRNEKGEDFAQAQPSSQAGPLSEGAGATAHGQGPPGEPTQVTVPQHRCSSNQA
RTENAKSAAHLPMSPRPASLDRGNYVRLNMKTKCFVRVGASRGRLLRKQVWKQKWKKKQEWFGK
SGPRATVKDTCFRCGQFGHWASQCSQPALNPGPGSTLTIQPKGDRNDKHPISTLGGVAQKTGTT
SCNHSAGEETEPAGPVLPVPHCPTPVLPLYPPGPLGQVADTPAEVFQVLEQLGHHTFRPGQERA
VMRILSGISTLLVLPTGAGKSLCYQLPALLYAKRSPCLTLVVSPLLSLMDDQVSDLPSCLKAAC
LHSGMTKKQRESVLKKVRAAQVHVLIVSPEALVGCGAKGPANLPPAAQLPPVAFACIDEVHCLS
QWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRSTARDVAQHLGIAEELEVSGSASIPANLH
LSVSMDRDSDQALVTLLQGDRFRTLDSIIIYCARRKDTERVAALLRTCLSTVRDSKPRGRGPET
LAEAYHAGMCSQERKRVQQAFMQGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIG
RAGRDGKPAHCHLFLHPQGEDLWELSRHVHADSTDFLAVKKLVQRVFPACSCAQRPMSPLEEVK
EHSGQQTYPVLGLACRGHKRALPVQSTVLALDMKEEAIETLLCYLELHPRHWLELLPYTYAHCH
LRCPGGSAQLQALVHRCPPLAACWAKWPPKDTSQGSSALEFDVVELADSMGWELASVRQALHQL
KWDPEPKKGAPQGTGVLVEFSELAFHLHSRGDLTDEEKDQICDFLYSRVQAREHKALAHLHQMS
KAFQSVAFPSCGPCLEQSDEGHSNRVKTLVSYYFEEEEEEEEEETMKDTQDPKPGQTQLQDWED
QVRRDVHQLLSLRPEEKFSGRAVARIFHGIASPCYPAQVFGQDRRFWRKYLHLDFHALMHLATE
ELLLRGR

hide sequence

RefSeq Acc Id:

ENSRNOP00000047177 ⟸ ENSRNOT00000045135

RefSeq Acc Id:	XP_038934761 ⟸ XM_039078833
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038934759 ⟸ XM_039078831
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038934760 ⟸ XM_039078832
- Peptide Label:	isoform X5

Protein Domains

CCHC-type Helicase ATP-binding Helicase C-terminal

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695436

Promoter ID:

EPDNEW_R5961

Type:

single initiation site

Name:

Recql4_1

Description:

RecQ like helicase 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	117,773,036 - 117,773,096	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307732	AgrOrtholog
Ensembl Genes	ENSRNOG00000032446	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000047177	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000045135	ENTREZGENE, UniProtKB/TrEMBL
InterPro	DEAD-like_N	UniProtKB/TrEMBL
	DNA/RNA_helicase_C	UniProtKB/TrEMBL
	DNA/RNA_helicase_DEAD/DEAH_N	UniProtKB/TrEMBL
	DNA_helicase_ATP-dep_RecQ	UniProtKB/TrEMBL
	DNA_rep_checkpnt_protein	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Znf_CCHC	UniProtKB/TrEMBL
	Znf_CCHC_sf	UniProtKB/TrEMBL
NCBI Gene	300057	ENTREZGENE
Pfam	DEAD	UniProtKB/TrEMBL
	Drc1-Sld2	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	zf-CCHC	UniProtKB/TrEMBL
PhenoGen	Recql4	PhenoGen
PROSITE	HELICASE_ATP_BIND_1	UniProtKB/TrEMBL
	HELICASE_CTER	UniProtKB/TrEMBL
	ZF_CCHC	UniProtKB/TrEMBL
SMART	DEXDc	UniProtKB/TrEMBL
	HELICc	UniProtKB/TrEMBL
	ZnF_C2HC	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
	SSF57756	UniProtKB/TrEMBL
TIGRFAMs	recQ_fam	UniProtKB/TrEMBL
UniProt	D4A5W5_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-11	Recql4	RecQ like helicase 4	Recql4	RecQ helicase-like 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-08-13	Recql4	RecQ helicase-like 4	Recql4	RecQ protein-like 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Recql4	RecQ protein-like 4	Recql4_predicted	RecQ protein-like 4 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Recql4_predicted	RecQ protein-like 4 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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