Gfus (GDP-L-fucose synthase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gfus (GDP-L-fucose synthase) Rattus norvegicus
Analyze
Symbol: Gfus
Name: GDP-L-fucose synthase
RGD ID: 1307028
Description: Predicted to enable GDP-L-fucose synthase activity; GDP-mannose 3,5-epimerase activity; and identical protein binding activity. Predicted to be involved in nucleotide-sugar metabolic process; positive regulation of endothelial cell migration; and positive regulation of endothelial cell-matrix adhesion via fibronectin. Predicted to act upstream of or within T cell mediated cytotoxicity. Orthologous to human GFUS (GDP-L-fucose synthase); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; hereditary fructose intolerance syndrome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase; LOC300036; tissue specific transplantation antigen P35B; Tsta3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,492,808 - 109,497,719 (-)NCBIGRCr8
mRatBN7.27107,612,087 - 107,617,005 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,612,094 - 107,616,948 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7109,351,600 - 109,356,446 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,575,278 - 111,580,124 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,521,220 - 111,526,070 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07116,958,427 - 116,963,281 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7116,958,392 - 116,963,295 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07116,851,230 - 116,856,084 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47113,929,477 - 113,934,330 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17113,963,706 - 113,967,872 (-)NCBI
Celera7103,969,092 - 103,973,946 (-)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2568889   PMID:8910301   PMID:9525924   PMID:12477932   PMID:18205178   PMID:19056867   PMID:23774504  


Genomics

Comparative Map Data
Gfus
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,492,808 - 109,497,719 (-)NCBIGRCr8
mRatBN7.27107,612,087 - 107,617,005 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,612,094 - 107,616,948 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7109,351,600 - 109,356,446 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,575,278 - 111,580,124 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,521,220 - 111,526,070 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07116,958,427 - 116,963,281 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7116,958,392 - 116,963,295 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07116,851,230 - 116,856,084 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47113,929,477 - 113,934,330 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17113,963,706 - 113,967,872 (-)NCBI
Celera7103,969,092 - 103,973,946 (-)NCBICelera
Cytogenetic Map7q34NCBI
GFUS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388143,612,618 - 143,618,048 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8143,612,618 - 143,618,048 (-)EnsemblGRCh38hg38GRCh38
GRCh378144,694,788 - 144,699,719 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368144,765,933 - 144,770,038 (-)NCBINCBI36Build 36hg18NCBI36
Build 348144,765,932 - 144,770,039NCBI
Celera8141,005,027 - 141,009,971 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8139,946,059 - 139,951,003 (-)NCBIHuRef
CHM1_18144,735,027 - 144,739,971 (-)NCBICHM1_1
T2T-CHM13v2.08144,762,035 - 144,767,465 (-)NCBIT2T-CHM13v2.0
Gfus
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391575,796,532 - 75,801,613 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1575,796,525 - 75,801,681 (-)EnsemblGRCm39 Ensembl
GRCm381575,924,669 - 75,929,821 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1575,924,676 - 75,929,832 (-)EnsemblGRCm38mm10GRCm38
MGSCv371575,755,113 - 75,760,160 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361575,751,938 - 75,756,985 (-)NCBIMGSCv36mm8
Celera1577,425,699 - 77,430,746 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1535.1NCBI
Gfus
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554542,313,172 - 2,317,829 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554542,313,172 - 2,317,829 (-)NCBIChiLan1.0ChiLan1.0
GFUS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27161,096,083 - 161,102,704 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18136,613,769 - 136,618,784 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08140,366,003 - 140,371,018 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18143,381,054 - 143,386,008 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8143,381,054 - 143,386,008 (-)Ensemblpanpan1.1panPan2
GFUS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,267,119 - 37,272,101 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,267,122 - 37,271,967 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,223,607 - 37,228,596 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01337,738,939 - 37,743,928 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1337,738,941 - 37,743,902 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11337,413,207 - 37,418,196 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01337,530,171 - 37,535,160 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,011,412 - 38,016,402 (-)NCBIUU_Cfam_GSD_1.0
Gfus
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,095,968 - 1,101,356 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364708,523,562 - 8,527,546 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364708,523,240 - 8,527,451 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GFUS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4949,867 - 959,744 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14950,947 - 955,865 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GFUS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18137,833,033 - 137,837,975 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8137,833,317 - 137,837,943 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660392,054,768 - 2,060,437 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gfus
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473513,129,564 - 13,134,009 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473513,129,572 - 13,134,285 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gfus
16 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:156
Count of miRNA genes:114
Interacting mature miRNAs:125
Transcripts:ENSRNOT00000012306
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat

Markers in Region
RH129008  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27107,612,117 - 107,612,324 (+)MAPPERmRatBN7.2
Rnor_6.07116,958,451 - 116,958,657NCBIRnor6.0
Rnor_5.07116,851,254 - 116,851,460UniSTSRnor5.0
RGSC_v3.47113,929,501 - 113,929,707UniSTSRGSC3.4
Celera7103,969,116 - 103,969,322UniSTS
RH 3.4 Map7785.5UniSTS
Cytogenetic Map7q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 57 41 19 41 8 11 74 35 41 11 8
Low 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001127455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005486584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC158885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF289545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA339313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK653514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000012306   ⟹   ENSRNOP00000012306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,612,095 - 107,616,948 (-)Ensembl
Rnor_6.0 Ensembl7116,958,392 - 116,963,295 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000082058   ⟹   ENSRNOP00000071672
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,612,095 - 107,616,948 (-)Ensembl
Rnor_6.0 Ensembl7116,958,428 - 116,963,281 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100492   ⟹   ENSRNOP00000087082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,612,094 - 107,616,244 (-)Ensembl
RefSeq Acc Id: NM_001127455   ⟹   NP_001120927
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,492,808 - 109,497,662 (-)NCBI
mRatBN7.27107,612,094 - 107,616,948 (-)NCBI
Rnor_6.07116,958,427 - 116,963,281 (-)NCBI
Rnor_5.07116,851,230 - 116,856,084 (-)NCBI
RGSC_v3.47113,929,477 - 113,934,330 (-)RGD
Celera7103,969,092 - 103,973,946 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001270789   ⟹   NP_001257718
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,492,808 - 109,497,662 (-)NCBI
mRatBN7.27107,612,094 - 107,616,948 (-)NCBI
Rnor_6.07116,958,427 - 116,963,281 (-)NCBI
Rnor_5.07116,851,230 - 116,856,084 (-)NCBI
Celera7103,969,092 - 103,973,946 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001270790   ⟹   NP_001257719
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,492,808 - 109,497,662 (-)NCBI
mRatBN7.27107,612,094 - 107,616,948 (-)NCBI
Rnor_6.07116,958,427 - 116,963,281 (-)NCBI
Rnor_5.07116,851,230 - 116,856,084 (-)NCBI
Celera7103,969,092 - 103,973,946 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063263307   ⟹   XP_063119377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,492,808 - 109,497,626 (-)NCBI
RefSeq Acc Id: XM_063263308   ⟹   XP_063119378
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,492,808 - 109,497,655 (-)NCBI
RefSeq Acc Id: XR_005486584
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,493,450 - 109,497,719 (-)NCBI
mRatBN7.27107,612,087 - 107,617,005 (-)NCBI
RefSeq Acc Id: NP_001120927   ⟸   NM_001127455
- Peptide Label: isoform a
- UniProtKB: A6HS39 (UniProtKB/TrEMBL),   A0A8I6A7C3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257719   ⟸   NM_001270790
- Peptide Label: isoform b
- UniProtKB: B0BNN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257718   ⟸   NM_001270789
- Peptide Label: isoform a
- UniProtKB: A6HS39 (UniProtKB/TrEMBL),   A0A8I6A7C3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071672   ⟸   ENSRNOT00000082058
RefSeq Acc Id: ENSRNOP00000012306   ⟸   ENSRNOT00000012306
RefSeq Acc Id: ENSRNOP00000087082   ⟸   ENSRNOT00000100492
RefSeq Acc Id: XP_063119378   ⟸   XM_063263308
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A7C3 (UniProtKB/TrEMBL),   A6HS39 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119377   ⟸   XM_063263307
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A7C3 (UniProtKB/TrEMBL),   A6HS39 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V762-F1-model_v2 AlphaFold G3V762 1-321 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695397
Promoter ID:EPDNEW_R5920
Type:multiple initiation site
Name:Tsta3_1
Description:tissue specific transplantation antigen P35B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07116,963,271 - 116,963,331EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307028 AgrOrtholog
BioCyc Gene G2FUF-32973 BioCyc
BioCyc Pathway PWY-66 [GDP-L-fucose biosynthesis I (from GDP-D-mannose)] BioCyc
BioCyc Pathway Image PWY-66 BioCyc
Ensembl Genes ENSRNOG00000009020 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012306 ENTREZGENE
  ENSRNOT00000012306.8 UniProtKB/TrEMBL
  ENSRNOT00000082058 ENTREZGENE
  ENSRNOT00000082058.2 UniProtKB/TrEMBL
  ENSRNOT00000100492 ENTREZGENE
  ENSRNOT00000100492.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
  UDP-galactose 4-epimerase, domain 1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8363456 IMAGE-MGC_LOAD
InterPro Epimerase_deHydtase UniProtKB/TrEMBL
  GDP_fucose_synth UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
KEGG Report rno:300036 UniProtKB/TrEMBL
MGC_CLONE MGC:188615 IMAGE-MGC_LOAD
NCBI Gene 300036 ENTREZGENE
PANTHER GDP-L-FUCOSE SYNTHASE UniProtKB/TrEMBL
  GDP-L-FUCOSE SYNTHASE UniProtKB/TrEMBL
Pfam Epimerase UniProtKB/TrEMBL
PhenoGen Gfus PhenoGen
RatGTEx ENSRNOG00000009020 RatGTEx
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A8I6A7C3 ENTREZGENE, UniProtKB/TrEMBL
  A6HS39 ENTREZGENE, UniProtKB/TrEMBL
  B0BNN0 ENTREZGENE, UniProtKB/TrEMBL
  G3V762_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-05-22 Gfus  GDP-L-fucose synthase  Tsta3  tissue specific transplantation antigen P35B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Tsta3  tissue specific transplantation antigen P35B   Tsta3_predicted  tissue specific transplantation antigen P35B (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Tsta3_predicted  tissue specific transplantation antigen P35B (predicted)      Symbol and Name status set to approved 70820 APPROVED