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Gene: Scrt1 (scratch family transcriptional repressor 1) Rattus norvegicus
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Symbol: Scrt1
Name: scratch family transcriptional repressor 1
Description: Predicted to have DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and regulation of neuron migration. Predicted to localize to nuclear body. Orthologous to human SCRT1 (scratch family transcriptional repressor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC366951; scratch family zinc finger 1; scratch homolog 1, zinc finger protein; scratch homolog 1, zinc finger protein (Drosophila); transcriptional repressor scratch 1
Orthologs:
Homo sapiens (human) : SCRT1 (scratch family transcriptional repressor 1)  HGNC  Alliance
Mus musculus (house mouse) : Scrt1 (scratch family zinc finger 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Scrt1 (scratch family transcriptional repressor 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SCRT1 (scratch family transcriptional repressor 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Scrt1 (scratch family transcriptional repressor 1)
Sus scrofa (pig) : SCRT1 (scratch family transcriptional repressor 1)
Chlorocebus sabaeus (African green monkey) : SCRT1 (scratch family transcriptional repressor 1)
Heterocephalus glaber (naked mole-rat) : Scrt1 (scratch family transcriptional repressor 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07117,583,453 - 117,587,103 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,583,453 - 117,587,103 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,571,084 - 117,574,734 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,569,141 - 114,572,791 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17114,601,230 - 114,606,928 (-)NCBI
Celera7104,592,479 - 104,596,126 (-)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Scrt1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1306236
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-07-28
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.