Ncf4 (neutrophil cytosolic factor 4) - Rat Genome Database

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Gene: Ncf4 (neutrophil cytosolic factor 4) Rattus norvegicus
Analyze
Symbol: Ncf4
Name: neutrophil cytosolic factor 4
RGD ID: 1593157
Description: Predicted to enable phosphatidylinositol-3-phosphate binding activity and superoxide-generating NADPH oxidase activator activity. Predicted to be involved in superoxide anion generation. Predicted to be located in cytosol and endosome membrane. Predicted to be part of NADPH oxidase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive chronic granulomatous disease 3 and rheumatoid arthritis. Orthologous to human NCF4 (neutrophil cytosolic factor 4); PARTICIPATES IN Leishmaniasis pathway; phagocytosis pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC366956; LOC500904; neutrophil cytosol factor 4; similar to neutrophil cytosolic factor 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,705,926 - 111,723,893 (+)NCBIGRCr8
mRatBN7.27109,825,420 - 109,843,389 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,826,020 - 109,843,389 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,575,804 - 111,592,610 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,799,365 - 113,816,171 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,768,035 - 113,784,810 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,481,711 - 119,499,426 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,482,272 - 119,499,425 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,473,732 - 119,490,872 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47116,167,621 - 116,190,630 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7106,165,444 - 106,181,739 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
AICA ribonucleotide  (EXP)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
buta-1,3-diene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
cadmium sulfate  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cocaine  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
D-glucose  (ISO)
DDE  (ISO)
diclofenac  (ISO)
dioxygen  (EXP)
diuron  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
fructose  (ISO)
fulvestrant  (ISO)
glucose  (ISO)
indometacin  (EXP)
L-methionine  (ISO)
manganese(II) chloride  (EXP)
methapyrilene  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
microcystin-LR  (ISO)
N-acetyl-L-cysteine  (EXP)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
quercetin  (ISO)
senecionine  (ISO)
silicon dioxide  (EXP,ISO)
sirolimus  (EXP)
sodium dichromate  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO)
cytosol  (ISO)
endosome membrane  (ISO)
membrane  (ISO)
NADPH oxidase complex  (IBA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. A case-control study of rheumatoid arthritis identifies an associated single nucleotide polymorphism in the NCF4 gene, supporting a role for the NADPH-oxidase complex in autoimmunity. Olsson LM, etal., Arthritis Res Ther. 2007;9(5):R98. doi: 10.1186/ar2299.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8280052   PMID:11684018   PMID:12477932   PMID:15850784   PMID:25224032  


Genomics

Comparative Map Data
Ncf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,705,926 - 111,723,893 (+)NCBIGRCr8
mRatBN7.27109,825,420 - 109,843,389 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,826,020 - 109,843,389 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,575,804 - 111,592,610 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,799,365 - 113,816,171 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,768,035 - 113,784,810 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,481,711 - 119,499,426 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,482,272 - 119,499,425 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,473,732 - 119,490,872 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47116,167,621 - 116,190,630 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7106,165,444 - 106,181,739 (+)NCBICelera
Cytogenetic Map7q34NCBI
NCF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,861,006 - 36,878,015 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,860,988 - 36,878,017 (+)EnsemblGRCh38hg38GRCh38
GRCh372237,257,048 - 37,274,057 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,586,991 - 35,604,005 (+)NCBINCBI36Build 36hg18NCBI36
Build 342235,581,544 - 35,598,558NCBI
Celera2221,054,984 - 21,075,404 (+)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2220,219,193 - 20,235,709 (+)NCBIHuRef
CHM1_12237,215,777 - 37,232,815 (+)NCBICHM1_1
T2T-CHM13v2.02237,316,866 - 37,336,974 (+)NCBIT2T-CHM13v2.0
Ncf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,128,324 - 78,146,782 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,129,001 - 78,146,780 (+)EnsemblGRCm39 Ensembl
GRCm381578,244,164 - 78,262,582 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,244,801 - 78,262,580 (+)EnsemblGRCm38mm10GRCm38
MGSCv371578,075,241 - 78,093,010 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361578,072,089 - 78,089,829 (+)NCBIMGSCv36mm8
Celera1579,705,722 - 79,723,507 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.1NCBI
Ncf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,388,018 - 23,408,090 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,388,456 - 23,405,121 (+)NCBIChiLan1.0ChiLan1.0
NCF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22346,715,341 - 46,735,474 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12249,406,644 - 49,426,776 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02217,775,590 - 17,795,725 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12235,611,589 - 35,631,400 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2235,611,589 - 35,631,400 (+)Ensemblpanpan1.1panPan2
NCF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,597,296 - 27,672,199 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,597,486 - 27,615,261 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1027,551,611 - 27,626,188 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01028,389,229 - 28,463,826 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1028,389,225 - 28,407,201 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11028,110,753 - 28,185,319 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,419,256 - 28,493,843 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,598,068 - 28,672,687 (-)NCBIUU_Cfam_GSD_1.0
Ncf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,991,297 - 11,005,134 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364924,001,898 - 4,010,456 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364924,001,711 - 4,015,253 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,874,953 - 10,994,014 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1510,876,147 - 10,994,002 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,477,878 - 8,593,943 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NCF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,560,047 - 19,579,342 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1919,566,562 - 19,579,352 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045106,283,752 - 106,303,762 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475210,901,934 - 10,918,106 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475210,902,035 - 10,918,183 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ncf4
114 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:35
Count of miRNA genes:30
Interacting mature miRNAs:34
Transcripts:ENSRNOT00000009544
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat

Markers in Region
RH144260  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27109,842,949 - 109,843,178 (+)MAPPERmRatBN7.2
Rnor_6.07119,498,986 - 119,499,214NCBIRnor6.0
Rnor_5.07119,490,432 - 119,490,660UniSTSRnor5.0
RGSC_v3.47116,190,191 - 116,190,419UniSTSRGSC3.4
Celera7106,181,300 - 106,181,528UniSTS
RH 3.4 Map7813.5UniSTS
Cytogenetic Map7q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 10 6 15 6 3 10
Low 1 37 47 35 4 35 8 11 61 33 32 1 8
Below cutoff 4 13 2 5

Sequence


RefSeq Acc Id: ENSRNOT00000009544   ⟹   ENSRNOP00000009544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7109,826,020 - 109,843,389 (+)Ensembl
Rnor_6.0 Ensembl7119,482,272 - 119,499,425 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101098   ⟹   ENSRNOP00000079654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7109,830,304 - 109,843,389 (+)Ensembl
RefSeq Acc Id: NM_001127304   ⟹   NP_001120776
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,706,526 - 111,723,893 (+)NCBI
mRatBN7.27109,826,020 - 109,843,389 (+)NCBI
Rnor_6.07119,482,272 - 119,499,425 (+)NCBI
Rnor_5.07119,473,732 - 119,490,872 (+)NCBI
RGSC_v3.47116,167,621 - 116,190,630 (+)RGD
Celera7106,165,444 - 106,181,739 (+)RGD
Sequence:
RefSeq Acc Id: XM_006241939   ⟹   XP_006242001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87111,705,926 - 111,723,834 (+)NCBI
mRatBN7.27109,825,420 - 109,843,332 (+)NCBI
Rnor_6.07119,481,711 - 119,499,426 (+)NCBI
Rnor_5.07119,473,732 - 119,490,872 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001120776   ⟸   NM_001127304
- UniProtKB: B2RZ98 (UniProtKB/TrEMBL),   D3ZS40 (UniProtKB/TrEMBL),   A0A9K3Y7E3 (UniProtKB/TrEMBL),   A0A8I5ZNF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242001   ⟸   XM_006241939
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZNF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000009544   ⟸   ENSRNOT00000009544
RefSeq Acc Id: ENSRNOP00000079654   ⟸   ENSRNOT00000101098
Protein Domains
PB1   PX   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RZ98-F1-model_v2 AlphaFold B2RZ98 1-339 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695458
Promoter ID:EPDNEW_R5983
Type:initiation region
Name:Ncf4_1
Description:neutrophil cytosolic factor 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07119,482,248 - 119,482,308EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593157 AgrOrtholog
BioCyc Gene G2FUF-32836 BioCyc
Ensembl Genes ENSRNOG00000006940 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009544 ENTREZGENE
  ENSRNOT00000009544.7 UniProtKB/TrEMBL
  ENSRNOT00000101098.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1520.10 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7129758 IMAGE-MGC_LOAD
InterPro IPR001683 UniProtKB/TrEMBL
  NCF_P40 UniProtKB/TrEMBL
  OPR_PB1 UniProtKB/TrEMBL
  p40phox_SH3 UniProtKB/TrEMBL
  PB1_P40 UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  PX_p40phox UniProtKB/TrEMBL
  SH3-like_dom UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
KEGG Report rno:500904 UniProtKB/TrEMBL
MGC_CLONE MGC:189418 IMAGE-MGC_LOAD
NCBI Gene 500904 ENTREZGENE
PANTHER PTHR15706:SF20 UniProtKB/TrEMBL
  SH3 MULTIPLE DOMAIN UniProtKB/TrEMBL
Pfam PB1 UniProtKB/TrEMBL
  PF00787 UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
PhenoGen Ncf4 PhenoGen
PRINTS P40PHOX UniProtKB/TrEMBL
  SH3DOMAIN UniProtKB/TrEMBL
PROSITE PB1 UniProtKB/TrEMBL
  PS50195 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006940 RatGTEx
SMART PB1 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SM00312 UniProtKB/TrEMBL
Superfamily-SCOP 64268 UniProtKB/TrEMBL
  CAD & PB1 domains UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
UniProt A0A8I5ZNF3 ENTREZGENE, UniProtKB/TrEMBL
  A0A9K3Y7E3 ENTREZGENE, UniProtKB/TrEMBL
  B2RZ98 ENTREZGENE, UniProtKB/TrEMBL
  D3ZS40 ENTREZGENE
UniProt Secondary D3ZS40 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-06-15 Ncf4  neutrophil cytosolic factor 4  Ncf4_predicted  neutrophil cytosolic factor 4 (predicted)  Data merged from RGD:1305943 1643240 APPROVED
2008-03-05 Ncf4  neutrophil cytosolic factor 4  LOC500904  similar to neutrophil cytosolic factor 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC500904  similar to neutrophil cytosolic factor 4      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Ncf4_predicted  neutrophil cytosolic factor 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED