Polr2f (RNA polymerase II, I and III subunit F) - Rat Genome Database

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Gene: Polr2f (RNA polymerase II, I and III subunit F) Rattus norvegicus
Analyze
Symbol: Polr2f
Name: RNA polymerase II, I and III subunit F
RGD ID: 708567
Description: Predicted to enable DNA-directed 5'-3' RNA polymerase activity. Predicted to contribute to RNA polymerase I activity; RNA polymerase II activity; and RNA polymerase III activity. Predicted to be involved in tRNA transcription by RNA polymerase III; transcription by RNA polymerase I; and transcription by RNA polymerase II. Predicted to be located in fibrillar center and nucleoplasm. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Orthologous to human POLR2F (RNA polymerase II, I and III subunit F); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription pathway; RNA polymerase III transcription pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DNA-directed RNA polymerase II subunit F; DNA-directed RNA polymerases I, II, and III subunit RPABC2; LOC83503; polymerase (RNA) II (DNA directed) polypeptide F; polymerase (RNA) II subunit F; polymerase II; RNA polymerase II subunit F; RNA polymerases I, II, and III subunit ABC2; RPB6; RPB6 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,592,977 - 112,604,681 (+)NCBIGRCr8
mRatBN7.27110,712,528 - 110,724,234 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7110,712,572 - 110,724,234 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7112,461,280 - 112,470,706 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07114,684,808 - 114,694,234 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07114,654,106 - 114,663,552 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07120,380,543 - 120,392,214 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,380,544 - 120,390,954 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,374,362 - 120,386,031 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47117,122,869 - 117,135,482 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17117,157,067 - 117,171,879 (+)NCBI
Celera7107,047,109 - 107,056,555 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Cell growth- and differentiation-dependent regulation of RNA polymerase III transcription. Dumay-Odelot H, etal., Cell Cycle. 2010 Sep 15;9(18):3687-99. Epub 2010 Sep 1.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Characterization of human RNA polymerase III identifies orthologues for Saccharomyces cerevisiae RNA polymerase III subunits. Hu P, etal., Mol Cell Biol. 2002 Nov;22(22):8044-55.
4. A serine residue in the N-terminal acidic region of rat RPB6, one of the common subunits of RNA polymerases, is exclusively phosphorylated by casein kinase II in vitro. Kayukawa K, etal., Gene 1999 Jun 24;234(1):139-47.
5. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
6. TFIIB-related factors in RNA polymerase I transcription. Knutson BA and Hahn S, Biochim Biophys Acta. 2013 Mar-Apr;1829(3-4):265-73. doi: 10.1016/j.bbagrm.2012.08.003. Epub 2012 Aug 30.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
13. RNA polymerase I activity is regulated at multiple steps in the transcription cycle: recent insights into factors that influence transcription elongation. Schneider DA Gene. 2012 Feb 10;493(2):176-84. doi: 10.1016/j.gene.2011.08.006. Epub 2011 Aug 26.
14. Conservation between the RNA polymerase I, II, and III transcription initiation machineries. Vannini A and Cramer P, Mol Cell. 2012 Feb 24;45(4):439-46. doi: 10.1016/j.molcel.2012.01.023.
Additional References at PubMed
PMID:9268387   PMID:9852112   PMID:12477932   PMID:15489334  


Genomics

Comparative Map Data
Polr2f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,592,977 - 112,604,681 (+)NCBIGRCr8
mRatBN7.27110,712,528 - 110,724,234 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7110,712,572 - 110,724,234 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7112,461,280 - 112,470,706 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07114,684,808 - 114,694,234 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07114,654,106 - 114,663,552 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07120,380,543 - 120,392,214 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,380,544 - 120,390,954 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,374,362 - 120,386,031 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47117,122,869 - 117,135,482 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17117,157,067 - 117,171,879 (+)NCBI
Celera7107,047,109 - 107,056,555 (+)NCBICelera
Cytogenetic Map7q34NCBI
POLR2F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,953,663 - 38,041,915 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2237,952,607 - 38,041,915 (+)EnsemblGRCh38hg38GRCh38
GRCh372238,349,670 - 38,437,922 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362236,679,664 - 36,693,752 (+)NCBINCBI36Build 36hg18NCBI36
Build 342236,674,217 - 36,688,306NCBI
Celera2222,151,393 - 22,167,047 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2221,315,753 - 21,331,407 (+)NCBIHuRef
CHM1_12238,308,430 - 38,324,073 (+)NCBICHM1_1
T2T-CHM13v2.02238,415,270 - 38,503,533 (+)NCBIT2T-CHM13v2.0
Polr2f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,025,525 - 79,035,974 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,025,209 - 79,035,974 (+)EnsemblGRCm39 Ensembl
GRCm381579,141,325 - 79,151,774 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,141,009 - 79,151,774 (+)EnsemblGRCm38mm10GRCm38
MGSCv371578,971,797 - 78,982,197 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361578,968,622 - 78,979,022 (+)NCBIMGSCv36mm8
Celera1581,254,081 - 81,264,455 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.7NCBI
Polr2f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,300,340 - 24,311,166 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,300,340 - 24,309,798 (+)NCBIChiLan1.0ChiLan1.0
POLR2F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11026,694,895 - 26,707,451 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1026,691,256 - 26,707,507 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1026,649,845 - 26,662,477 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01027,486,614 - 27,499,265 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1027,486,609 - 27,535,525 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11027,206,582 - 27,218,897 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01027,518,146 - 27,530,610 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01027,695,350 - 27,707,999 (-)NCBIUU_Cfam_GSD_1.0
Polr2f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,115,070 - 10,186,350 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364923,186,760 - 3,196,796 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364923,186,930 - 3,196,738 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLR2F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl59,855,983 - 9,917,726 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.159,905,359 - 9,917,721 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.257,303,659 - 7,316,021 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POLR2F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11920,654,464 - 20,668,267 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1920,654,239 - 20,669,872 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045105,107,935 - 105,122,006 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Polr2f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247529,978,273 - 9,988,134 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247529,978,373 - 9,988,192 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Polr2f
34 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:177
Count of miRNA genes:136
Interacting mature miRNAs:146
Transcripts:ENSRNOT00000015009
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat

Markers in Region
RH132698  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27110,724,001 - 110,724,200 (+)MAPPERmRatBN7.2
Rnor_6.07120,391,982 - 120,392,180NCBIRnor6.0
Rnor_5.07120,385,799 - 120,385,997UniSTSRnor5.0
RGSC_v3.47117,137,422 - 117,137,620UniSTSRGSC3.4
Celera7107,058,495 - 107,058,693UniSTS
RH 3.4 Map7840.1UniSTS
Cytogenetic Map7q34UniSTS
BE105428  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27110,724,232 - 110,724,392 (+)MAPPERmRatBN7.2
Rnor_6.07120,392,213 - 120,392,372NCBIRnor6.0
Rnor_5.07120,386,030 - 120,386,189UniSTSRnor5.0
RGSC_v3.47117,137,653 - 117,137,812UniSTSRGSC3.4
Celera7107,058,726 - 107,058,885UniSTS
RH 3.4 Map7840.1UniSTS
Cytogenetic Map7q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000015009   ⟹   ENSRNOP00000015009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7110,712,572 - 110,724,234 (+)Ensembl
Rnor_6.0 Ensembl7120,380,544 - 120,390,954 (+)Ensembl
RefSeq Acc Id: NM_031335   ⟹   NP_112625
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,593,064 - 112,602,509 (+)NCBI
mRatBN7.27110,712,617 - 110,722,062 (+)NCBI
Rnor_6.07120,380,597 - 120,390,042 (+)NCBI
Rnor_5.07120,374,362 - 120,386,031 (+)NCBI
RGSC_v3.47117,122,869 - 117,135,482 (+)RGD
Celera7107,047,109 - 107,056,555 (+)RGD
Sequence:
RefSeq Acc Id: XR_010053048
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,592,977 - 112,604,681 (+)NCBI
RefSeq Acc Id: XR_355831
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,592,977 - 112,604,681 (+)NCBI
mRatBN7.27110,712,528 - 110,724,234 (+)NCBI
Rnor_6.07120,380,543 - 120,392,214 (+)NCBI
Rnor_5.07120,374,362 - 120,386,031 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_112625 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83552 (Get FASTA)   NCBI Sequence Viewer  
  BAA33414 (Get FASTA)   NCBI Sequence Viewer  
  EDM15821 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015009.3
  ENSRNOP00055043810
  ENSRNOP00060026614
  ENSRNOP00065046855
GenBank Protein O88828 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_112625   ⟸   NM_031335
- UniProtKB: O88828 (UniProtKB/Swiss-Prot),   A6HSQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000015009   ⟸   ENSRNOT00000015009

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88828-F1-model_v2 AlphaFold O88828 1-127 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695477
Promoter ID:EPDNEW_R6002
Type:initiation region
Name:Polr2f_1
Description:RNA polymerase II subunit F
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07120,380,565 - 120,380,625EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708567 AgrOrtholog
BioCyc Gene G2FUF-32779 BioCyc
Ensembl Genes ENSRNOG00000011214 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00055030556 UniProtKB/Swiss-Prot
  ENSRNOG00060018885 UniProtKB/Swiss-Prot
  ENSRNOG00065033081 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000015009.7 UniProtKB/Swiss-Prot
  ENSRNOT00055053010 UniProtKB/Swiss-Prot
  ENSRNOT00060032612 UniProtKB/Swiss-Prot
  ENSRNOT00065056914 UniProtKB/Swiss-Prot
Gene3D-CATH 3.90.940.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7190444 IMAGE-MGC_LOAD
InterPro DNA-dir_RNA_polK_14-18kDa_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pol_omega/K/RPB6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RPB6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RPB6/omega-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rpo6/Rpb6 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
KEGG Report rno:83503 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:93368 IMAGE-MGC_LOAD
NCBI Gene 83503 ENTREZGENE
PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT K UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RNA_pol_Rpb6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Polr2f PhenoGen
PIRSF RPB6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RpoK/RPB6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RNA_POL_K_14KD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011214 RatGTEx
  ENSRNOG00055030556 RatGTEx
  ENSRNOG00060018885 RatGTEx
  ENSRNOG00065033081 RatGTEx
SMART RNA_pol_Rpb6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RPB6/omega subunit-like UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A6HSQ1 ENTREZGENE, UniProtKB/TrEMBL
  O88828 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-22 Polr2f  RNA polymerase II, I and III subunit F  Polr2f  RNA polymerase II subunit F  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-07-21 Polr2f  RNA polymerase II subunit F  Polr2f  polymerase (RNA) II subunit F  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-03-09 Polr2f  polymerase (RNA) II subunit F  Polr2f  polymerase (RNA) II (DNA directed) polypeptide F  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Polr2f  polymerase (RNA) II (DNA directed) polypeptide F  LOC83503  polymerase II  Symbol and Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_regulation undergoes in vitro serine phosphorylation by casein kinase II 1299534