Mgat3 (beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase) - Rat Genome Database

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Gene: Mgat3 (beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase) Rattus norvegicus
Analyze
Symbol: Mgat3
Name: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase
RGD ID: 3084
Description: Predicted to enable beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process; protein localization; and regulation of cell migration. Predicted to act upstream of or within several processes, including amyloid-beta metabolic process; negative regulation of lysosomal protein catabolic process; and positive regulation of protein localization to early endosome. Predicted to be located in Golgi membrane. Orthologous to human MGAT3 (beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase); PARTICIPATES IN E-cadherin signaling pathway; N-linked glycan biosynthetic pathway; INTERACTS WITH (R,R,R)-alpha-tocopherol; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: glcNAc-T III; GNT-III; mannoside acetyl glucosaminyl transferase 3; mannoside acetyl glucosaminyltransferase 3; mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase; N-acetylglucosaminyltransferase III; N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase III
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27111,708,353 - 111,761,825 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,675,730 - 111,762,026 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7113,488,109 - 113,514,341 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07115,711,653 - 115,737,884 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07115,681,009 - 115,707,241 (+)NCBIRnor_WKY
Rnor_6.07121,394,541 - 121,436,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,408,829 - 121,435,022 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07121,375,145 - 121,426,932 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47118,429,750 - 118,457,125 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17118,463,979 - 118,491,351 (+)NCBI
Celera7108,062,223 - 108,088,293 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. Purification, cDNA cloning, and expression of UDP-N-acetylglucosamine: beta-D-mannoside beta-1,4N-acetylglucosaminyltransferase III from rat kidney. Nishikawa A, etal., J Biol Chem 1992 Sep 5;267(25):18199-204.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:19403558   PMID:20554946   PMID:24619415   PMID:25592972   PMID:26467158   PMID:26801611  


Genomics

Comparative Map Data
Mgat3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27111,708,353 - 111,761,825 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,675,730 - 111,762,026 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7113,488,109 - 113,514,341 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07115,711,653 - 115,737,884 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07115,681,009 - 115,707,241 (+)NCBIRnor_WKY
Rnor_6.07121,394,541 - 121,436,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,408,829 - 121,435,022 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07121,375,145 - 121,426,932 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47118,429,750 - 118,457,125 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17118,463,979 - 118,491,351 (+)NCBI
Celera7108,062,223 - 108,088,293 (+)NCBICelera
Cytogenetic Map7q34NCBI
MGAT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382239,457,012 - 39,492,194 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2239,457,012 - 39,492,194 (+)EnsemblGRCh38hg38GRCh38
GRCh372239,853,017 - 39,888,199 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,183,271 - 38,218,145 (+)NCBINCBI36Build 36hg18NCBI36
Build 342238,177,824 - 38,209,939NCBI
Celera2223,655,378 - 23,690,243 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2222,847,758 - 22,852,697 (+)NCBIHuRef
CHM1_12239,812,132 - 39,846,938 (+)NCBICHM1_1
T2T-CHM13v2.02239,927,644 - 39,962,814 (+)NCBIT2T-CHM13v2.0
Mgat3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391580,057,852 - 80,099,720 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1580,057,922 - 80,099,720 (+)EnsemblGRCm39 Ensembl
GRCm381580,173,651 - 80,215,519 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1580,173,721 - 80,215,519 (+)EnsemblGRCm38mm10GRCm38
MGSCv371580,004,151 - 80,045,949 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361580,001,066 - 80,042,774 (+)NCBIMGSCv36mm8
Celera1582,329,172 - 82,333,729 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.85NCBI
Mgat3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541325,360,806 - 25,367,782 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541325,346,135 - 25,367,782 (+)NCBIChiLan1.0ChiLan1.0
MGAT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan12251,995,998 - 52,030,835 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02220,363,244 - 20,398,471 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12238,194,445 - 38,218,881 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2238,214,029 - 38,215,630 (+)Ensemblpanpan1.1panPan2
MGAT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11025,564,825 - 25,605,787 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1025,568,053 - 25,570,413 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1025,500,650 - 25,547,893 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01026,316,509 - 26,363,783 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11026,031,065 - 26,078,462 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01026,350,607 - 26,397,843 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01026,526,372 - 26,573,605 (-)NCBIUU_Cfam_GSD_1.0
Mgat3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,134,358 - 9,177,078 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364922,144,732 - 2,186,871 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049364922,144,775 - 2,149,344 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MGAT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl58,777,965 - 8,807,100 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.158,777,964 - 8,807,144 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.256,080,556 - 6,092,563 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MGAT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11922,019,351 - 22,065,551 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1922,060,736 - 22,062,337 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045103,587,311 - 103,624,054 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mgat3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247528,859,596 - 8,891,440 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247528,859,809 - 8,891,344 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mgat3
282 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:562
Count of miRNA genes:262
Interacting mature miRNAs:320
Transcripts:ENSRNOT00000023434
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat

Markers in Region
RH144073  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27111,759,292 - 111,759,545 (+)MAPPERmRatBN7.2
Rnor_6.07121,434,401 - 121,434,653NCBIRnor6.0
Rnor_5.07121,424,400 - 121,424,652UniSTSRnor5.0
RGSC_v3.47118,456,507 - 118,456,759UniSTSRGSC3.4
Celera7108,087,675 - 108,087,927UniSTS
RH 3.4 Map7859.4UniSTS
Cytogenetic Map7q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 4 4 74 35 28 1
Low 3 41 40 24 19 24 7 9 13 10 7
Below cutoff 2 13 13 13 1 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000023434   ⟹   ENSRNOP00000023434
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7111,733,587 - 111,761,825 (+)Ensembl
Rnor_6.0 Ensembl7121,408,829 - 121,435,022 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095447   ⟹   ENSRNOP00000093292
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7111,675,730 - 111,762,026 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097844   ⟹   ENSRNOP00000080479
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7111,718,837 - 111,762,026 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098313   ⟹   ENSRNOP00000076545
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7111,718,837 - 111,762,026 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103460   ⟹   ENSRNOP00000082492
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7111,718,837 - 111,762,026 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105515   ⟹   ENSRNOP00000076485
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7111,737,470 - 111,762,026 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109650   ⟹   ENSRNOP00000082287
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7111,737,470 - 111,761,827 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113053   ⟹   ENSRNOP00000097179
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7111,733,186 - 111,762,026 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117804   ⟹   ENSRNOP00000077338
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7111,718,837 - 111,761,827 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117832   ⟹   ENSRNOP00000086583
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7111,675,831 - 111,762,026 (+)Ensembl
RefSeq Acc Id: NM_019239   ⟹   NP_062112
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27111,733,719 - 111,759,911 (+)NCBI
Rnor_6.07121,408,829 - 121,435,019 (+)NCBI
Rnor_5.07121,375,145 - 121,426,932 (+)NCBI
RGSC_v3.47118,429,750 - 118,457,125 (+)RGD
Celera7108,062,223 - 108,088,293 (+)RGD
Sequence:
RefSeq Acc Id: XM_006242072   ⟹   XP_006242134
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27111,718,851 - 111,761,825 (+)NCBI
Rnor_6.07121,394,541 - 121,436,935 (+)NCBI
Rnor_5.07121,375,145 - 121,426,932 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006242074   ⟹   XP_006242136
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27111,745,094 - 111,761,825 (+)NCBI
Rnor_6.07121,420,675 - 121,436,935 (+)NCBI
Rnor_5.07121,375,145 - 121,426,932 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039078597   ⟹   XP_038934525
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27111,748,504 - 111,761,825 (+)NCBI
RefSeq Acc Id: XM_039078598   ⟹   XP_038934526
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27111,718,847 - 111,761,825 (+)NCBI
RefSeq Acc Id: XM_039078599   ⟹   XP_038934527
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27111,708,353 - 111,761,825 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_062112   ⟸   NM_019239
- UniProtKB: Q02527 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006242134   ⟸   XM_006242072
- Peptide Label: isoform X2
- UniProtKB: Q02527 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006242136   ⟸   XM_006242074
- Peptide Label: isoform X2
- UniProtKB: Q02527 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000023434   ⟸   ENSRNOT00000023434
RefSeq Acc Id: XP_038934527   ⟸   XM_039078599
- Peptide Label: isoform X2
- UniProtKB: Q02527 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038934526   ⟸   XM_039078598
- Peptide Label: isoform X2
- UniProtKB: Q02527 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038934525   ⟸   XM_039078597
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000082492   ⟸   ENSRNOT00000103460
RefSeq Acc Id: ENSRNOP00000097179   ⟸   ENSRNOT00000113053
RefSeq Acc Id: ENSRNOP00000080479   ⟸   ENSRNOT00000097844
RefSeq Acc Id: ENSRNOP00000082287   ⟸   ENSRNOT00000109650
RefSeq Acc Id: ENSRNOP00000086583   ⟸   ENSRNOT00000117832
RefSeq Acc Id: ENSRNOP00000093292   ⟸   ENSRNOT00000095447
RefSeq Acc Id: ENSRNOP00000076545   ⟸   ENSRNOT00000098313
RefSeq Acc Id: ENSRNOP00000076485   ⟸   ENSRNOT00000105515
RefSeq Acc Id: ENSRNOP00000077338   ⟸   ENSRNOT00000117804

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q02527-F1-model_v2 AlphaFold Q02527 1-538 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3084 AgrOrtholog
BioCyc Gene G2FUF-32710 BioCyc
BioCyc Pathway PWY-7426 [complex N-linked glycan biosynthesis (vertebrates)] BioCyc
Ensembl Genes ENSRNOG00000017434 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000023434 ENTREZGENE
  ENSRNOP00000023434.4 UniProtKB/Swiss-Prot
  ENSRNOP00000076485.1 UniProtKB/Swiss-Prot
  ENSRNOP00000076545.1 UniProtKB/Swiss-Prot
  ENSRNOP00000077338.1 UniProtKB/Swiss-Prot
  ENSRNOP00000080479 ENTREZGENE
  ENSRNOP00000080479.1 UniProtKB/Swiss-Prot
  ENSRNOP00000082287.1 UniProtKB/Swiss-Prot
  ENSRNOP00000082492 ENTREZGENE
  ENSRNOP00000082492.1 UniProtKB/Swiss-Prot
  ENSRNOP00000086583.1 UniProtKB/Swiss-Prot
  ENSRNOP00000093292 ENTREZGENE
  ENSRNOP00000093292.1 UniProtKB/Swiss-Prot
  ENSRNOP00000097179.1 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000023434 ENTREZGENE
  ENSRNOT00000023434.3 UniProtKB/Swiss-Prot
  ENSRNOT00000095447 ENTREZGENE
  ENSRNOT00000095447.1 UniProtKB/Swiss-Prot
  ENSRNOT00000097844 ENTREZGENE
  ENSRNOT00000097844.1 UniProtKB/Swiss-Prot
  ENSRNOT00000098313.1 UniProtKB/Swiss-Prot
  ENSRNOT00000103460 ENTREZGENE
  ENSRNOT00000103460.1 UniProtKB/Swiss-Prot
  ENSRNOT00000105515.1 UniProtKB/Swiss-Prot
  ENSRNOT00000109650.1 UniProtKB/Swiss-Prot
  ENSRNOT00000113053.1 UniProtKB/Swiss-Prot
  ENSRNOT00000117804.1 UniProtKB/Swiss-Prot
  ENSRNOT00000117832.1 UniProtKB/Swiss-Prot
InterPro Glyco_trans_17 UniProtKB/Swiss-Prot
KEGG Report rno:29582 UniProtKB/Swiss-Prot
NCBI Gene 29582 ENTREZGENE
PANTHER BETA-1,4-MANNOSYL-GLYCOPROTEIN 4-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE UniProtKB/Swiss-Prot
  PTHR12224 UniProtKB/Swiss-Prot
Pfam Glyco_transf_17 UniProtKB/Swiss-Prot
PhenoGen Mgat3 PhenoGen
TIGR TC236402
UniProt MGAT3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-13 Mgat3  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase  Mgat3  mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-08-29 Mgat3  mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase  Mgat3  mannoside acetyl glucosaminyltransferase 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Mgat3  mannoside acetyl glucosaminyltransferase 3      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains contains three putative N-glycosylation sites 69892
gene_protein 536 amino acids 69892