Plec (plectin) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Plec (plectin) Rattus norvegicus
Analyze
Symbol: Plec
Name: plectin
RGD ID: 621649
Description: Exhibits ankyrin binding activity and protein N-terminus binding activity. Involved in epithelial cell differentiation; female pregnancy; and response to nutrient. Localizes to several cellular components, including apical plasma membrane; basal plasma membrane; and sarcolemma. Predicted to colocalize with intermediate filament. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2Q; epidermolysis bullosa simplex; epidermolysis bullosa simplex Ogna type; and epidermolysis bullosa simplex with muscular dystrophy. Orthologous to human PLEC (plectin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: Pcn; Plec1; plectin 1; Pltn
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07117,230,319 - 117,291,859 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,230,319 - 117,289,961 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,215,919 - 117,277,093 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,202,742 - 114,262,385 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17114,236,973 - 114,271,955 (-)NCBI
Celera7104,240,654 - 104,299,857 (-)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
adefovir pivoxil  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butan-1-ol  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
chloroacetaldehyde  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
dichlorine  (EXP)
dicrotophos  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
ethanol  (ISO)
finasteride  (EXP)
fluoxetine  (EXP)
genistein  (ISO)
glyphosate  (EXP)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
ibuprofen  (ISO)
indometacin  (ISO)
isobutanol  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
methamphetamine  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosomorpholine  (EXP)
nickel sulfate  (ISO)
ozone  (EXP,ISO)
paracetamol  (ISO)
phenytoin  (EXP)
piperonyl butoxide  (ISO)
progesterone  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sulindac  (EXP)
tamoxifen  (ISO)
titanium dioxide  (ISO)
Tributyltin oxide  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:2023931   PMID:2050743   PMID:8633055   PMID:8830774   PMID:10556294   PMID:12482924   PMID:14559777   PMID:14627610   PMID:15632090   PMID:16392042   PMID:16392043   PMID:16641100  
PMID:17606998   PMID:19199708   PMID:19945614   PMID:21109228   PMID:21149456   PMID:21423176   PMID:21915674   PMID:22082260   PMID:22114352   PMID:22658674   PMID:23376485   PMID:23979707  
PMID:25002582   PMID:25468996   PMID:29476059   PMID:30187999   PMID:30361391  


Genomics

Comparative Map Data
Plec
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07117,230,319 - 117,291,859 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,230,319 - 117,289,961 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,215,919 - 117,277,093 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,202,742 - 114,262,385 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17114,236,973 - 114,271,955 (-)NCBI
Celera7104,240,654 - 104,299,857 (-)NCBICelera
Cytogenetic Map7q34NCBI
PLEC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl8143,915,147 - 143,976,734 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl8143,915,153 - 143,976,734 (-)EnsemblGRCh38hg38GRCh38
GRCh388143,915,153 - 143,976,800 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh378144,989,321 - 145,050,913 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368145,061,309 - 145,121,531 (-)NCBINCBI36hg18NCBI36
Build 348145,061,308 - 145,121,531NCBI
Celera8141,303,490 - 141,364,268 (-)NCBI
Cytogenetic Map8q24.3NCBI
HuRef8140,243,473 - 140,304,261 (-)NCBIHuRef
CHM1_18145,029,540 - 145,091,031 (-)NCBICHM1_1
Plec
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,055,174 - 76,115,578 (-)NCBIGRCm39mm39
GRCm381576,170,974 - 76,231,378 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,170,974 - 76,232,574 (-)EnsemblGRCm38mm10GRCm38
MGSCv371576,001,404 - 76,061,808 (-)NCBIGRCm37mm9NCBIm37
MGSCv361575,998,231 - 76,058,633 (-)NCBImm8
Celera1577,670,771 - 77,731,324 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1535.48NCBI
Plec
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554542,583,138 - 2,643,211 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554542,583,138 - 2,644,308 (-)NCBIChiLan1.0ChiLan1.0
PLEC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.18143,673,672 - 143,711,211 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8143,674,696 - 143,712,433 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v08140,681,252 - 140,742,753 (-)NCBIMhudiblu_PPA_v0panPan3
PLEC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1337,450,248 - 37,513,523 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11337,449,379 - 37,503,752 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
LOC101957084
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364708,194,124 - 8,252,139 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLEC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4685,456 - 753,859 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14696,355 - 753,859 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PLEC
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,125,471 - 138,187,209 (-)NCBI
ChlSab1.1 Ensembl8138,125,280 - 138,149,364 (-)Ensembl

Position Markers
RH129479  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.07117,230,412 - 117,230,596NCBIRnor6.0
Rnor_5.07117,216,012 - 117,216,196UniSTSRnor5.0
RGSC_v3.47114,202,835 - 114,203,019UniSTSRGSC3.4
Celera7104,240,747 - 104,240,931UniSTS
Cytogenetic Map7q34UniSTS
RH 3.4 Map7787.4UniSTS
RH131032  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.07117,291,713 - 117,291,907NCBIRnor6.0
Rnor_5.07117,277,416 - 117,277,610UniSTSRnor5.0
RGSC_v3.47114,264,137 - 114,264,331UniSTSRGSC3.4
Celera7104,301,609 - 104,301,803UniSTS
Cytogenetic Map7q34UniSTS
RH 3.4 Map7790.3UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)72920071124838025Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)748118835128611831Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)750704769128085642Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)751251919118477612Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)751251919145729302Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)755072862123602998Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)755072862123602998Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)755072862123602998Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)771448715145729302Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)777428105127748511Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)777428234122421148Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)781645773140745067Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)785595369130595369Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)785595369130595369Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)788365265119318087Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)788365265121986709Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)788365265133365265Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)788365265134673427Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)791018361136018361Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)791832949145158140Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)791832949145158140Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)793726906138726906Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)793726906138726906Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)796630946141630946Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)7100028953145729302Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)7100160423140335001Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)7100192194145192194Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)7103815550126525386Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)7103867802126080176Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)7106564316145729302Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7111519266143965591Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7112429186126525386Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7114825174145729302Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7115922628145729302Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1031
Count of miRNA genes:220
Interacting mature miRNAs:300
Transcripts:ENSRNOT00000006311, ENSRNOT00000040762, ENSRNOT00000042642
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 26 10 18 10 8 11 52 30 38 11 8
Low 31 31 1 31 22 5 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001164296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_022401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAHX01051621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01051622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01051623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01051624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB092338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC107096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ635267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U96274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U96275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U96276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X59601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000006311   ⟹   ENSRNOP00000006311
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7117,230,321 - 117,254,765 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000040762   ⟹   ENSRNOP00000044096
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7117,230,319 - 117,259,141 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000042642   ⟹   ENSRNOP00000040018
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7117,230,321 - 117,289,961 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000081021   ⟹   ENSRNOP00000069947
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7117,230,321 - 117,257,402 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000082271   ⟹   ENSRNOP00000071867
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7117,230,319 - 117,267,803 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000083429   ⟹   ENSRNOP00000073548
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7117,230,321 - 117,265,493 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000086550   ⟹   ENSRNOP00000070850
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7117,230,321 - 117,259,791 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088945   ⟹   ENSRNOP00000074685
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7117,230,319 - 117,267,402 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091285   ⟹   ENSRNOP00000070533
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7117,230,321 - 117,288,018 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091840   ⟹   ENSRNOP00000070881
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7117,230,321 - 117,268,300 (-)Ensembl
RefSeq Acc Id: NM_001164296   ⟹   NP_001157768
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,289,961 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,299,857 (-)RGD
Sequence:
RefSeq Acc Id: NM_001164297   ⟹   NP_001157769
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,288,018 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,297,914 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001164298   ⟹   NP_001157770
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,268,300 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,278,514 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001164299   ⟹   NP_001157771
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,267,803 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,278,017 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001164302   ⟹   NP_001157774
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,267,402 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,277,616 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001164303   ⟹   NP_001157775
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,259,791 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,270,124 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001164304   ⟹   NP_001157776
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,259,141 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,269,474 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001164305   ⟹   NP_001157777
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,258,599 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,268,932 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001164307   ⟹   NP_001157779
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,257,402 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,267,735 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001164308   ⟹   NP_001157780
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,254,765 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,265,098 (-)NCBI
Sequence:
RefSeq Acc Id: NM_022401   ⟹   NP_071796
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,265,352 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,275,566 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241870   ⟹   XP_006241932
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,265,545 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241875   ⟹   XP_006241937
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,291,240 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241882   ⟹   XP_006241944
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,259,647 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595082   ⟹   XP_017450571
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,265,545 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595083   ⟹   XP_017450572
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,265,545 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595084   ⟹   XP_017450573
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,269,478 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595085   ⟹   XP_017450574
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,269,478 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595086   ⟹   XP_017450575
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,291,240 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595087   ⟹   XP_017450576
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,291,482 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595088   ⟹   XP_017450577
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,291,859 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595089   ⟹   XP_017450578
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,291,240 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595090   ⟹   XP_017450579
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,258,732 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595091   ⟹   XP_017450580
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,258,732 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595092   ⟹   XP_017450581
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,256,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595093   ⟹   XP_017450582
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,259,647 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595094   ⟹   XP_017450583
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,256,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595095   ⟹   XP_017450584
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,259,647 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595096   ⟹   XP_017450585
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,288,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595097   ⟹   XP_017450586
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,230,319 - 117,288,052 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001157768 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157769 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157770 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157771 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157774 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157775 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157776 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157777 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157779 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157780 (Get FASTA)   NCBI Sequence Viewer  
  NP_071796 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241932 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241937 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241944 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450571 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450572 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450573 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450574 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450575 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450576 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450577 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450578 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450579 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450580 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450581 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450582 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450583 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450584 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450585 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450586 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC53209 (Get FASTA)   NCBI Sequence Viewer  
  AAC53210 (Get FASTA)   NCBI Sequence Viewer  
  AAC53211 (Get FASTA)   NCBI Sequence Viewer  
  AAR95655 (Get FASTA)   NCBI Sequence Viewer  
  AAR95656 (Get FASTA)   NCBI Sequence Viewer  
  AAR95657 (Get FASTA)   NCBI Sequence Viewer  
  AAR95658 (Get FASTA)   NCBI Sequence Viewer  
  AAR95659 (Get FASTA)   NCBI Sequence Viewer  
  AAR95660 (Get FASTA)   NCBI Sequence Viewer  
  AAR95661 (Get FASTA)   NCBI Sequence Viewer  
  AAR95662 (Get FASTA)   NCBI Sequence Viewer  
  AAR95663 (Get FASTA)   NCBI Sequence Viewer  
  AAR95664 (Get FASTA)   NCBI Sequence Viewer  
  AAR95665 (Get FASTA)   NCBI Sequence Viewer  
  BAC66621 (Get FASTA)   NCBI Sequence Viewer  
  CAA42169 (Get FASTA)   NCBI Sequence Viewer  
  CAG25720 (Get FASTA)   NCBI Sequence Viewer  
  EDM16003 (Get FASTA)   NCBI Sequence Viewer  
  EDM16004 (Get FASTA)   NCBI Sequence Viewer  
  EDM16005 (Get FASTA)   NCBI Sequence Viewer  
  P30427 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_071796   ⟸   NM_022401
- Peptide Label: isoform 1
- Sequence:
RefSeq Acc Id: NP_001157768   ⟸   NM_001164296
- Peptide Label: isoform 1c
- Sequence:
RefSeq Acc Id: NP_001157769   ⟸   NM_001164297
- Peptide Label: isoform 1f
- Sequence:
RefSeq Acc Id: NP_001157770   ⟸   NM_001164298
- Peptide Label: isoform 1e
- Sequence:
RefSeq Acc Id: NP_001157771   ⟸   NM_001164299
- Peptide Label: isoform 1hij
- UniProtKB: A0A0G2K1J5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157774   ⟸   NM_001164302
- Peptide Label: isoform 1hij
- UniProtKB: A0A0G2K1J5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157775   ⟸   NM_001164303
- Peptide Label: isoform 1d
- Sequence:
RefSeq Acc Id: NP_001157776   ⟸   NM_001164304
- Peptide Label: isoform 1b
- UniProtKB: F7F9U6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157777   ⟸   NM_001164305
- Peptide Label: isoform 1hij
- UniProtKB: A0A0G2K1J5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157779   ⟸   NM_001164307
- Peptide Label: isoform 1g
- Sequence:
RefSeq Acc Id: NP_001157780   ⟸   NM_001164308
- Peptide Label: isoform 1a
- Sequence:
RefSeq Acc Id: XP_006241937   ⟸   XM_006241875
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006241932   ⟸   XM_006241870
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006241944   ⟸   XM_006241882
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_017450577   ⟸   XM_017595088
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017450576   ⟸   XM_017595087
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017450578   ⟸   XM_017595089
- Peptide Label: isoform X7
- Sequence: