Plec (plectin) - Rat Genome Database

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Gene: Plec (plectin) Rattus norvegicus
Analyze
Symbol: Plec
Name: plectin
RGD ID: 621649
Description: Enables ankyrin binding activity. A structural constituent of cytoskeleton. Involved in epithelial cell differentiation; female pregnancy; and response to nutrient. Located in several cellular components, including apical plasma membrane; basal plasma membrane; and sarcolemma. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2Q; epidermolysis bullosa simplex; epidermolysis bullosa simplex Ogna type; and epidermolysis bullosa simplex with muscular dystrophy. Orthologous to human PLEC (plectin); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: Pcn; Plec1; plectin 1; Pltn
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,768,447 - 109,829,798 (-)NCBIGRCr8
mRatBN7.27107,887,764 - 107,949,100 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,887,764 - 107,945,467 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7109,631,418 - 109,690,909 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,855,099 - 111,914,591 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,813,628 - 111,873,076 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07117,230,319 - 117,291,859 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,230,319 - 117,289,961 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,215,919 - 117,277,093 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,202,742 - 114,262,385 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17114,236,973 - 114,271,955 (-)NCBI
Celera7104,240,654 - 104,299,857 (-)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
adefovir pivoxil  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butan-1-ol  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cannabidiol  (ISO)
chloroacetaldehyde  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cocaine  (EXP)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
dichlorine  (EXP)
dicrotophos  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
finasteride  (EXP)
fluoxetine  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
ibuprofen  (ISO)
indometacin  (ISO)
isobutanol  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
methamphetamine  (ISO)
methidathion  (ISO)
methoxychlor  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosomorpholine  (EXP)
nickel sulfate  (ISO)
niclosamide  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
phenytoin  (EXP)
pinostrobin  (ISO)
piperonyl butoxide  (ISO)
progesterone  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulindac  (EXP)
tamoxifen  (ISO)
thapsigargin  (EXP)
titanium dioxide  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (EXP,ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
actin cytoskeleton organization  (ISO)
actin filament organization  (ISO)
actomyosin contractile ring assembly actin filament organization  (IEA,ISO)
adherens junction organization  (IEA,ISO)
cardiac muscle cell development  (IEA,ISO)
cell morphogenesis  (IEA,ISO)
cell motility  (ISO)
cellular response to fluid shear stress  (IEA,ISO)
cellular response to hydrostatic pressure  (IEA,ISO)
cellular response to mechanical stimulus  (IEA,ISO)
epithelial cell differentiation  (IEP)
establishment of skin barrier  (IEA,ISO)
female pregnancy  (IEP)
fibroblast migration  (IEA,ISO)
gene expression  (IEA,ISO)
hemidesmosome assembly  (IBA,IEA,ISO,ISS)
intermediate filament cytoskeleton organization  (IBA,IEA,ISO)
intermediate filament organization  (IEA,ISO)
keratinocyte development  (IEA,ISO)
keratinocyte differentiation  (ISO)
leukocyte migration involved in immune response  (IEA,ISO)
mitochondrion organization  (IEA,ISO)
multicellular organism growth  (IEA,ISO)
myelination in peripheral nervous system  (ISO)
myoblast differentiation  (IEA,ISO)
nucleus organization  (IEA,ISO)
peripheral nervous system myelin maintenance  (IEA,ISO)
protein localization  (IEA,ISO)
protein-containing complex organization  (IEA,ISO)
regulation of vascular permeability  (IEA,ISO)
respiratory electron transport chain  (IEA,ISO)
response to food  (IEA,ISO)
response to nutrient  (IDA)
sarcomere organization  (IEA,ISO)
skeletal muscle fiber development  (IEA,ISO)
skeletal muscle tissue development  (ISO)
skeletal myofibril assembly  (IEA,ISO)
skin development  (ISO)
T cell chemotaxis  (IEA,ISO)
tight junction organization  (IEA,ISO)
transmission of nerve impulse  (IEA,ISO)
wound healing  (IBA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Caspase 8-mediated cleavage of plectin precedes F-actin breakdown in acinar cells during pancreatitis. Beil M, etal., Am J Physiol Gastrointest Liver Physiol 2002 Mar;282(3):G450-60.
2. Plectin transcript diversity: identification and tissue distribution of variants with distinct first coding exons and rodless isoforms. Elliott CE, etal., Genomics 1997 May 15;42(1):115-25.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Naringin-sensitive phosphorylation of plectin, a cytoskeletal cross-linking protein, in isolated rat hepatocytes. Larsen AK, etal., J Biol Chem 2002 Sep 20;277(38):34826-35.
5. Direct binding of plectin to Fer kinase and negative regulation of its catalytic activity. Lunter PC and Wiche G, Biochem Biophys Res Commun 2002 Aug 30;296(4):904-10.
6. Novel interactions of ankyrins-G at the costameres: the muscle-specific Obscurin/Titin-Binding-related Domain (OTBD) binds plectin and filamin C. Maiweilidan Y, etal., Exp Cell Res. 2011 Apr 1;317(6):724-36. doi: 10.1016/j.yexcr.2011.01.002. Epub 2011 Jan 9.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. Cytoskeletal proteins in uterine epithelial cells only partially return to the pre-receptive state after the period of receptivity. Png FY and Murphy CR, Acta Histochem. 2002;104(3):235-44.
11. Homozygous deletion mutations in the plectin gene (PLEC1) in patients with epidermolysis bullosa simplex associated with late-onset muscular dystrophy. Pulkkinen L, etal., Hum Mol Genet. 1996 Oct;5(10):1539-46.
12. GOA pipeline RGD automated data pipeline
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Localization of plectin and other related proteins along the sarcolemma in smooth muscle cells of rat colon. Tanaka H, etal., Cell Struct Funct. 2001 Apr;26(2):61-70.
16. Perinuclear distribution of plectin characterizes visceral epithelial cells of rat glomeruli. Yaoita E, etal., Am J Pathol. 1996 Jul;149(1):319-27.
17. Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation. Zhang T, etal., Genome Res 2004 Jan;14(1):79-89. Epub 2003 Dec 12.
Additional References at PubMed
PMID:2023931   PMID:2050743   PMID:8633055   PMID:8830774   PMID:10556294   PMID:12482924   PMID:14559777   PMID:14627610   PMID:15632090   PMID:16392042   PMID:16392043   PMID:16641100  
PMID:17606998   PMID:19199708   PMID:19945614   PMID:21109228   PMID:21149456   PMID:21423176   PMID:21915674   PMID:22082260   PMID:22114352   PMID:22658674   PMID:23376485   PMID:23979707  
PMID:25002582   PMID:25468996   PMID:29476059   PMID:30187999   PMID:30361391   PMID:35352799  


Genomics

Comparative Map Data
Plec
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,768,447 - 109,829,798 (-)NCBIGRCr8
mRatBN7.27107,887,764 - 107,949,100 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,887,764 - 107,945,467 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7109,631,418 - 109,690,909 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,855,099 - 111,914,591 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,813,628 - 111,873,076 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07117,230,319 - 117,291,859 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,230,319 - 117,289,961 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,215,919 - 117,277,093 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,202,742 - 114,262,385 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17114,236,973 - 114,271,955 (-)NCBI
Celera7104,240,654 - 104,299,857 (-)NCBICelera
Cytogenetic Map7q34NCBI
PLEC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388143,915,153 - 143,976,745 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8143,915,153 - 143,976,734 (-)EnsemblGRCh38hg38GRCh38
GRCh378144,989,321 - 145,050,913 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368145,061,309 - 145,121,531 (-)NCBINCBI36Build 36hg18NCBI36
Build 348145,061,308 - 145,121,531NCBI
Celera8141,303,490 - 141,364,268 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8140,243,473 - 140,304,261 (-)NCBIHuRef
CHM1_18145,029,546 - 145,091,031 (-)NCBICHM1_1
T2T-CHM13v2.08145,073,432 - 145,135,033 (-)NCBIT2T-CHM13v2.0
Plec
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,055,174 - 76,115,578 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,055,174 - 76,116,774 (-)EnsemblGRCm39 Ensembl
GRCm381576,170,974 - 76,231,378 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,170,974 - 76,232,574 (-)EnsemblGRCm38mm10GRCm38
MGSCv371576,001,404 - 76,061,808 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361575,998,231 - 76,058,633 (-)NCBIMGSCv36mm8
Celera1577,670,771 - 77,731,324 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1535.48NCBI
Plec
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554542,583,138 - 2,643,211 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554542,583,138 - 2,644,308 (-)NCBIChiLan1.0ChiLan1.0
PLEC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27161,404,304 - 161,465,828 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18136,934,031 - 136,995,506 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08140,681,252 - 140,742,753 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18143,673,672 - 143,711,211 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8143,674,696 - 143,712,433 (-)Ensemblpanpan1.1panPan2
PLEC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,449,379 - 37,503,752 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,450,248 - 37,513,523 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,413,420 - 37,467,660 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01337,924,192 - 37,980,292 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1337,872,891 - 37,979,994 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11337,599,296 - 37,631,689 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01337,726,376 - 37,780,585 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,203,929 - 38,236,330 (-)NCBIUU_Cfam_GSD_1.0
LOC101957084
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303756,507 - 826,040 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364708,216,205 - 8,250,978 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364708,194,124 - 8,252,139 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLEC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4689,034 - 753,696 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14696,355 - 753,859 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PLEC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,125,471 - 138,187,209 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8138,125,280 - 138,149,364 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660391,686,663 - 1,748,404 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Plec
256 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1031
Count of miRNA genes:220
Interacting mature miRNAs:300
Transcripts:ENSRNOT00000006311, ENSRNOT00000040762, ENSRNOT00000042642
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat

Markers in Region
RH129479  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27107,887,856 - 107,888,041 (+)MAPPERmRatBN7.2
Rnor_6.07117,230,412 - 117,230,596NCBIRnor6.0
Rnor_5.07117,216,012 - 117,216,196UniSTSRnor5.0
RGSC_v3.47114,202,835 - 114,203,019UniSTSRGSC3.4
Celera7104,240,747 - 104,240,931UniSTS
RH 3.4 Map7787.4UniSTS
Cytogenetic Map7q34UniSTS
RH131032  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27107,949,161 - 107,949,356 (+)MAPPERmRatBN7.2
Rnor_6.07117,291,713 - 117,291,907NCBIRnor6.0
Rnor_5.07117,277,416 - 117,277,610UniSTSRnor5.0
RGSC_v3.47114,264,137 - 114,264,331UniSTSRGSC3.4
Celera7104,301,609 - 104,301,803UniSTS
RH 3.4 Map7790.3UniSTS
Cytogenetic Map7q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 26 10 18 10 8 11 52 30 38 11 8
Low 31 31 1 31 22 5 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001164296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_022401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB092338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC107096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ635267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY480032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U96274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U96275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U96276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X59601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000006311   ⟹   ENSRNOP00000006311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7117,230,321 - 117,254,765 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000040762   ⟹   ENSRNOP00000044096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,887,764 - 107,916,587 (-)Ensembl
Rnor_6.0 Ensembl7117,230,319 - 117,259,141 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000042642   ⟹   ENSRNOP00000040018
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7117,230,321 - 117,289,961 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000081021   ⟹   ENSRNOP00000069947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7117,230,321 - 117,257,402 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000082271   ⟹   ENSRNOP00000071867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7117,230,319 - 117,267,803 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000083429   ⟹   ENSRNOP00000073548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,887,764 - 107,922,798 (-)Ensembl
Rnor_6.0 Ensembl7117,230,321 - 117,265,493 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086550   ⟹   ENSRNOP00000070850
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,887,764 - 107,917,237 (-)Ensembl
Rnor_6.0 Ensembl7117,230,321 - 117,259,791 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088945   ⟹   ENSRNOP00000074685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7117,230,319 - 117,267,402 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091285   ⟹   ENSRNOP00000070533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,887,764 - 107,945,467 (-)Ensembl
Rnor_6.0 Ensembl7117,230,321 - 117,288,018 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091840   ⟹   ENSRNOP00000070881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7117,230,321 - 117,268,300 (-)Ensembl
RefSeq Acc Id: NM_001164296   ⟹   NP_001157768
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,828,089 (-)NCBI
mRatBN7.27107,887,764 - 107,947,410 (-)NCBI
Rnor_6.07117,230,319 - 117,289,961 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,299,857 (-)RGD
Sequence:
RefSeq Acc Id: NM_001164297   ⟹   NP_001157769
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,826,146 (-)NCBI
mRatBN7.27107,887,764 - 107,945,467 (-)NCBI
Rnor_6.07117,230,319 - 117,288,018 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,297,914 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001164298   ⟹   NP_001157770
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,806,428 (-)NCBI
mRatBN7.27107,887,764 - 107,925,746 (-)NCBI
Rnor_6.07117,230,319 - 117,268,300 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,278,514 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001164299   ⟹   NP_001157771
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,805,931 (-)NCBI
mRatBN7.27107,887,764 - 107,925,249 (-)NCBI
Rnor_6.07117,230,319 - 117,267,803 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,278,017 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001164302   ⟹   NP_001157774
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,805,530 (-)NCBI
mRatBN7.27107,887,764 - 107,924,848 (-)NCBI
Rnor_6.07117,230,319 - 117,267,402 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,277,616 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001164303   ⟹   NP_001157775
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,797,919 (-)NCBI
mRatBN7.27107,887,764 - 107,917,237 (-)NCBI
Rnor_6.07117,230,319 - 117,259,791 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,270,124 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001164304   ⟹   NP_001157776
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,797,269 (-)NCBI
mRatBN7.27107,887,764 - 107,916,587 (-)NCBI
Rnor_6.07117,230,319 - 117,259,141 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,269,474 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001164305   ⟹   NP_001157777
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,796,727 (-)NCBI
mRatBN7.27107,887,764 - 107,916,045 (-)NCBI
Rnor_6.07117,230,319 - 117,258,599 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,268,932 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001164307   ⟹   NP_001157779
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,795,530 (-)NCBI
mRatBN7.27107,887,764 - 107,914,848 (-)NCBI
Rnor_6.07117,230,319 - 117,257,402 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,267,735 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001164308   ⟹   NP_001157780
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,792,893 (-)NCBI
mRatBN7.27107,887,764 - 107,912,211 (-)NCBI
Rnor_6.07117,230,319 - 117,254,765 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,265,098 (-)NCBI
Sequence:
RefSeq Acc Id: NM_022401   ⟹   NP_071796
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,803,480 (-)NCBI
mRatBN7.27107,887,764 - 107,922,798 (-)NCBI
Rnor_6.07117,230,319 - 117,265,352 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
RGSC_v3.47114,202,742 - 114,262,385 (-)RGD
Celera7104,240,654 - 104,275,566 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241870   ⟹   XP_006241932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,803,645 (-)NCBI
mRatBN7.27107,887,764 - 107,922,972 (-)NCBI
Rnor_6.07117,230,319 - 117,265,545 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241875   ⟹   XP_006241937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,829,385 (-)NCBI
mRatBN7.27107,887,764 - 107,948,709 (-)NCBI
Rnor_6.07117,230,319 - 117,291,240 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241882   ⟹   XP_006241944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,797,273 (-)NCBI
mRatBN7.27107,887,764 - 107,916,862 (-)NCBI
Rnor_6.07117,230,319 - 117,259,647 (-)NCBI
Rnor_5.07117,215,919 - 117,277,093 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595082   ⟹   XP_017450571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,803,646 (-)NCBI
mRatBN7.27107,887,764 - 107,922,973 (-)NCBI
Rnor_6.07117,230,319 - 117,265,545 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595083   ⟹   XP_017450572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,803,646 (-)NCBI
mRatBN7.27107,887,764 - 107,922,972 (-)NCBI
Rnor_6.07117,230,319 - 117,265,545 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595084   ⟹   XP_017450573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,806,386 (-)NCBI
mRatBN7.27107,887,764 - 107,925,705 (-)NCBI
Rnor_6.07117,230,319 - 117,269,478 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595085   ⟹   XP_017450574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,806,386 (-)NCBI
mRatBN7.27107,887,764 - 107,925,705 (-)NCBI
Rnor_6.07117,230,319 - 117,269,478 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595086   ⟹   XP_017450575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,829,386 (-)NCBI
mRatBN7.27107,887,764 - 107,948,709 (-)NCBI
Rnor_6.07117,230,319 - 117,291,240 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595087   ⟹   XP_017450576
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,829,606 (-)NCBI
mRatBN7.27107,887,764 - 107,948,845 (-)NCBI
Rnor_6.07117,230,319 - 117,291,482 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595088   ⟹   XP_017450577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,829,774 (-)NCBI
mRatBN7.27107,887,764 - 107,949,100 (-)NCBI
Rnor_6.07117,230,319 - 117,291,859 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595089   ⟹   XP_017450578
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,829,386 (-)NCBI
mRatBN7.27107,887,764 - 107,948,709 (-)NCBI
Rnor_6.07117,230,319 - 117,291,240 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595090   ⟹   XP_017450579
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,795,602 (-)NCBI
mRatBN7.27107,887,764 - 107,914,912 (-)NCBI
Rnor_6.07117,230,319 - 117,258,732 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595091   ⟹   XP_017450580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,795,600 (-)NCBI
mRatBN7.27107,887,764 - 107,914,912 (-)NCBI
Rnor_6.07117,230,319 - 117,258,732 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595092   ⟹   XP_017450581
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,792,931 (-)NCBI
mRatBN7.27107,887,764 - 107,912,273 (-)NCBI
Rnor_6.07117,230,319 - 117,256,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595093   ⟹   XP_017450582
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,797,273 (-)NCBI
mRatBN7.27107,887,764 - 107,916,865 (-)NCBI
Rnor_6.07117,230,319 - 117,259,647 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595094   ⟹   XP_017450583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,792,931 (-)NCBI
mRatBN7.27107,887,764 - 107,912,271 (-)NCBI
Rnor_6.07117,230,319 - 117,256,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595095   ⟹   XP_017450584
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,797,273 (-)NCBI
mRatBN7.27107,887,764 - 107,916,865 (-)NCBI
Rnor_6.07117,230,319 - 117,259,647 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595096   ⟹   XP_017450585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,826,186 (-)NCBI
mRatBN7.27107,887,764 - 107,945,503 (-)NCBI
Rnor_6.07117,230,319 - 117,288,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595097   ⟹   XP_017450586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,826,186 (-)NCBI
mRatBN7.27107,887,764 - 107,945,503 (-)NCBI
Rnor_6.07117,230,319 - 117,288,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079848   ⟹   XP_038935776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,798,007 (-)NCBI
mRatBN7.27107,887,764 - 107,917,281 (-)NCBI
RefSeq Acc Id: XM_039079850   ⟹   XP_038935778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,798,007 (-)NCBI
mRatBN7.27107,887,764 - 107,917,281 (-)NCBI
RefSeq Acc Id: XM_039079851   ⟹   XP_038935779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,803,645 (-)NCBI
mRatBN7.27107,887,764 - 107,922,971 (-)NCBI
RefSeq Acc Id: XM_063264208   ⟹   XP_063120278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,829,470 (-)NCBI
RefSeq Acc Id: XM_063264209   ⟹   XP_063120279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,829,798 (-)NCBI
RefSeq Acc Id: XM_063264210   ⟹   XP_063120280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,829,744 (-)NCBI
RefSeq Acc Id: XM_063264211   ⟹   XP_063120281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,793,656 (-)NCBI
RefSeq Acc Id: XM_063264212   ⟹   XP_063120282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,768,447 - 109,829,385 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001157768 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157769 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157770 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157771 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157774 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157775 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157776 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157777 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157779 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157780 (Get FASTA)   NCBI Sequence Viewer  
  NP_071796 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241932 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241937 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241944 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450571 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450572 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450573 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450574 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450575 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450576 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450577 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450578 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450579 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450580 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450581 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450582 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450583 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450584 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450585 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450586 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935776 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935778 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935779 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120278 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120279 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120280 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120281 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120282 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC53209 (Get FASTA)   NCBI Sequence Viewer  
  AAC53210 (Get FASTA)   NCBI Sequence Viewer  
  AAC53211 (Get FASTA)   NCBI Sequence Viewer  
  AAR95655 (Get FASTA)   NCBI Sequence Viewer  
  AAR95656 (Get FASTA)   NCBI Sequence Viewer  
  AAR95657 (Get FASTA)   NCBI Sequence Viewer  
  AAR95658 (Get FASTA)   NCBI Sequence Viewer  
  AAR95659 (Get FASTA)   NCBI Sequence Viewer  
  AAR95660 (Get FASTA)   NCBI Sequence Viewer  
  AAR95661 (Get FASTA)   NCBI Sequence Viewer  
  AAR95662 (Get FASTA)   NCBI Sequence Viewer  
  AAR95663 (Get FASTA)   NCBI Sequence Viewer  
  AAR95664 (Get FASTA)   NCBI Sequence Viewer  
  AAR95665 (Get FASTA)   NCBI Sequence Viewer  
  BAC66621 (Get FASTA)   NCBI Sequence Viewer  
  CAA42169 (Get FASTA)   NCBI Sequence Viewer  
  CAG25720 (Get FASTA)   NCBI Sequence Viewer  
  EDM16003 (Get FASTA)   NCBI Sequence Viewer  
  EDM16004 (Get FASTA)   NCBI Sequence Viewer  
  EDM16005 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000044096.5
  ENSRNOP00000070533.2
  ENSRNOP00000070850.2
  ENSRNOP00000073548.2
GenBank Protein P30427 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_071796   ⟸   NM_022401
- Peptide Label: isoform 1
- UniProtKB: A6HS68 (UniProtKB/TrEMBL),   Q6S3A0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157768   ⟸   NM_001164296
- Peptide Label: isoform 1c
- UniProtKB: A6HS66 (UniProtKB/TrEMBL),   F1MAL6 (UniProtKB/TrEMBL),   Q6S3A5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157769   ⟸   NM_001164297
- Peptide Label: isoform 1f
- UniProtKB: Q6S3A4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157770   ⟸   NM_001164298
- Peptide Label: isoform 1e
- UniProtKB: Q6S3A3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157771   ⟸   NM_001164299
- Peptide Label: isoform 1hij
- UniProtKB: Q6S3A1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157774   ⟸   NM_001164302
- Peptide Label: isoform 1hij
- UniProtKB: Q6S3A1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157775   ⟸   NM_001164303
- Peptide Label: isoform 1d
- UniProtKB: Q6S399 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157776   ⟸   NM_001164304
- Peptide Label: isoform 1b
- UniProtKB: Q6S398 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157777   ⟸   NM_001164305
- Peptide Label: isoform 1hij
- UniProtKB: Q6S3A1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157779   ⟸   NM_001164307
- Peptide Label: isoform 1g
- UniProtKB: Q6S396 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157780   ⟸   NM_001164308
- Peptide Label: isoform 1a
- UniProtKB: F7F744 (UniProtKB/TrEMBL),   Q6S395 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241937   ⟸   XM_006241875
- Peptide Label: isoform X8
- UniProtKB: A6HS66 (UniProtKB/TrEMBL),   F1MAL6 (UniProtKB/TrEMBL),   Q6S3A5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241932   ⟸   XM_006241870
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K5T2 (UniProtKB/TrEMBL),   A6HS68 (UniProtKB/TrEMBL),   Q6S3A0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241944   ⟸   XM_006241882
- Peptide Label: isoform X16
- UniProtKB: F7F9U6 (UniProtKB/TrEMBL),   Q6S398 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450577   ⟸   XM_017595088
- Peptide Label: isoform X6
- UniProtKB: A6HS67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450576   ⟸   XM_017595087
- Peptide Label: isoform X6
- UniProtKB: A6HS67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450578   ⟸   XM_017595089
- Peptide Label: isoform X7
- UniProtKB: A6HS67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450575   ⟸   XM_017595086
- Peptide Label: isoform X6
- UniProtKB: A6HS67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450586   ⟸   XM_017595097
- Peptide Label: isoform X17
- UniProtKB: Q6S3A4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450585   ⟸   XM_017595096
- Peptide Label: isoform X15
- UniProtKB: A0A0G2JY63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450574   ⟸   XM_017595085
- Peptide Label: isoform X5
- UniProtKB: Q6S3A3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450573   ⟸   XM_017595084
- Peptide Label: isoform X4
- UniProtKB: Q6S3A3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450572   ⟸   XM_017595083
- Peptide Label: isoform X2
- UniProtKB: A6HS68 (UniProtKB/TrEMBL),   Q6S3A0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450571   ⟸   XM_017595082
- Peptide Label: isoform X1
- UniProtKB: A6HS68 (UniProtKB/TrEMBL),   Q6S3A0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450584   ⟸   XM_017595095
- Peptide Label: isoform X14
- UniProtKB: Q6S398 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450582   ⟸   XM_017595093
- Peptide Label: isoform X12
- UniProtKB: Q6S398 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450580   ⟸   XM_017595091
- Peptide Label: isoform X10
- UniProtKB: Q6S396 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450579   ⟸   XM_017595090
- Peptide Label: isoform X9
- UniProtKB: Q6S396 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450583   ⟸   XM_017595094
- Peptide Label: isoform X13
- UniProtKB: F7F744 (UniProtKB/TrEMBL),   Q6S395 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450581   ⟸   XM_017595092
- Peptide Label: isoform X11
- UniProtKB: F7F744 (UniProtKB/TrEMBL),   Q6S395 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006311   ⟸   ENSRNOT00000006311
Ensembl Acc Id: ENSRNOP00000071867   ⟸   ENSRNOT00000082271
Ensembl Acc Id: ENSRNOP00000070533   ⟸   ENSRNOT00000091285
Ensembl Acc Id: ENSRNOP00000073548   ⟸   ENSRNOT00000083429
Ensembl Acc Id: ENSRNOP00000069947   ⟸   ENSRNOT00000081021
Ensembl Acc Id: ENSRNOP00000070850   ⟸   ENSRNOT00000086550
Ensembl Acc Id: ENSRNOP00000074685   ⟸   ENSRNOT00000088945
Ensembl Acc Id: ENSRNOP00000070881   ⟸   ENSRNOT00000091840
Ensembl Acc Id: ENSRNOP00000040018   ⟸   ENSRNOT00000042642
Ensembl Acc Id: ENSRNOP00000044096   ⟸   ENSRNOT00000040762
RefSeq Acc Id: XP_038935779   ⟸   XM_039079851
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038935778   ⟸   XM_039079850
- Peptide Label: isoform X19
- UniProtKB: Q6S399 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935776   ⟸   XM_039079848
- Peptide Label: isoform X18
- UniProtKB: A0A0G2JYZ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120279   ⟸   XM_063264209
- Peptide Label: isoform X8
- UniProtKB: A6HS66 (UniProtKB/TrEMBL),   F1MAL6 (UniProtKB/TrEMBL),   Q6S3A5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120280   ⟸   XM_063264210
- Peptide Label: isoform X8
- UniProtKB: A6HS66 (UniProtKB/TrEMBL),   F1MAL6 (UniProtKB/TrEMBL),   Q6S3A5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120278   ⟸   XM_063264208
- Peptide Label: isoform X6
- UniProtKB: A6HS67 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120282   ⟸   XM_063264212
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063120281   ⟸   XM_063264211
- Peptide Label: isoform X20
- UniProtKB: Q6S3A1 (UniProtKB/TrEMBL)
Protein Domains
Calponin-homology (CH)   SH3

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695404
Promoter ID:EPDNEW_R5927
Type:multiple initiation site
Name:Plec_2
Description:plectin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5928  EPDNEW_R5929  EPDNEW_R5930  EPDNEW_R5931  EPDNEW_R5932  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,254,753 - 117,254,813EPDNEW
RGD ID:13695405
Promoter ID:EPDNEW_R5928
Type:initiation region
Name:Plec_5
Description:plectin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5927  EPDNEW_R5929  EPDNEW_R5930  EPDNEW_R5931  EPDNEW_R5932  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,257,383 - 117,257,443EPDNEW
RGD ID:13695406
Promoter ID:EPDNEW_R5929
Type:multiple initiation site
Name:Plec_4
Description:plectin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5927  EPDNEW_R5928  EPDNEW_R5930  EPDNEW_R5931  EPDNEW_R5932  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,259,040 - 117,259,100EPDNEW
RGD ID:13695407
Promoter ID:EPDNEW_R5930
Type:initiation region
Name:Plec_6
Description:plectin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5927  EPDNEW_R5928  EPDNEW_R5929  EPDNEW_R5931  EPDNEW_R5932  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,259,768 - 117,259,828EPDNEW
RGD ID:13695408
Promoter ID:EPDNEW_R5931
Type:initiation region
Name:Plec_3
Description:plectin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5927  EPDNEW_R5928  EPDNEW_R5929  EPDNEW_R5930  EPDNEW_R5932  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,265,523 - 117,265,583EPDNEW
RGD ID:13695409
Promoter ID:EPDNEW_R5932
Type:multiple initiation site
Name:Plec_1
Description:plectin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5927  EPDNEW_R5928  EPDNEW_R5929  EPDNEW_R5930  EPDNEW_R5931  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07117,288,021 - 117,288,081EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621649 AgrOrtholog
BioCyc Gene G2FUF-32948 BioCyc
Ensembl Genes ENSRNOG00000023781 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000040762.7 UniProtKB/TrEMBL
  ENSRNOT00000083429.2 UniProtKB/TrEMBL
  ENSRNOT00000086550.2 UniProtKB/TrEMBL
  ENSRNOT00000091285.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.10.418.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.58.1060 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.58.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.160.780 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.1290.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 Domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Actinin_actin-bd_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Desmoplakin_SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Desmoplakin_Spectrin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PCN-like_spectrin-like_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Plakin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Plakin_repeat_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Plectin_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S10_plectin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot
  Spectrin/alpha-actinin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 64204 ENTREZGENE
PANTHER PLECTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23169 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00307 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Plectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S10_plectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin_like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SR_plectin_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Plec PhenoGen
PROSITE ACTININ_1 UniProtKB/TrEMBL
  ACTININ_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000023781 RatGTEx
SMART PLEC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00033 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPEC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Spectrin repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF75399 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JY63 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JYZ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K5T2 ENTREZGENE, UniProtKB/TrEMBL
  A6HS66 ENTREZGENE, UniProtKB/TrEMBL
  A6HS67 ENTREZGENE, UniProtKB/TrEMBL
  A6HS68 ENTREZGENE, UniProtKB/TrEMBL
  F1MAL6 ENTREZGENE
  F7F744 ENTREZGENE
  F7F9U6 ENTREZGENE, UniProtKB/TrEMBL
  P30427 ENTREZGENE, UniProtKB/Swiss-Prot
  Q6S395 ENTREZGENE, UniProtKB/TrEMBL
  Q6S396 ENTREZGENE, UniProtKB/TrEMBL
  Q6S398 ENTREZGENE, UniProtKB/TrEMBL
  Q6S399 ENTREZGENE, UniProtKB/TrEMBL
  Q6S3A0 ENTREZGENE, UniProtKB/TrEMBL
  Q6S3A1 ENTREZGENE, UniProtKB/TrEMBL
  Q6S3A3 ENTREZGENE, UniProtKB/TrEMBL
  Q6S3A4 ENTREZGENE, UniProtKB/TrEMBL
  Q6S3A5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1MAL6 UniProtKB/TrEMBL
  F7F744 UniProtKB/TrEMBL
  O08879 UniProtKB/Swiss-Prot
  O08880 UniProtKB/Swiss-Prot
  O08881 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-05 Plec  plectin  Plec1  plectin 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-23 Plec1  plectin 1  Plec  plectin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-02-05 Plec  plectin  Plec1  plectin 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-06-27     Plec1  plectin 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Plec1  plectin 1    plectin  Name updated 1299863 APPROVED
2002-08-07 Plec1  plectin      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_regulation plectin organization disrupted by protein phosphatase inhibitors and okadaic acid 729534
gene_transcript contains multiple promoters which are diffentially activated in a tissue specific manner for alternative cis-splicing of the variable exons 1302827