Matn2 (matrilin 2) - Rat Genome Database

Name: Matn2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Matn2 (matrilin 2) Rattus norvegicus

Analyze

Symbol:

Matn2

Name:

matrilin 2

RGD ID:

1305353

Description:

Predicted to have calcium ion binding activity. Predicted to be involved in neurogenesis and response to axon injury. Predicted to localize to basement membrane. Orthologous to human MATN2 (matrilin 2); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

LOC299996; matrilin-2

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MATN2 (matrilin 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Matn2 (matrilin 2)	HGNC	Treefam, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Matn2 (matrilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MATN2 (matrilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MATN2 (matrilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Matn2 (matrilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MATN2 (matrilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	MATN2 (matrilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Matn2 (matrilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MATN2 (matrilin 2)	Alliance	DIOPT (HGNC\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	65,494,996 - 65,644,613 (+)	NCBI
Rnor_6.0 Ensembl	7	72,985,495 - 73,207,695 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	7	72,985,832 - 73,210,093 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	7	73,288,317 - 73,377,215 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	69,715,611 - 69,880,723 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	7	69,720,785 - 69,901,453 (+)	NCBI
Celera	7	62,599,934 - 62,745,634 (+)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-acetamidofluorene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

carbon nanotube (ISO)

choline (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

cytarabine (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

etoposide (ISO)

folic acid (ISO)

indometacin (ISO)

irinotecan (ISO)

L-methionine (ISO)

lead(0) (ISO)

lead(2+) (ISO)

methapyrilene (ISO)

methotrexate (ISO)

methylmercury chloride (ISO)

mitomycin C (ISO)

nickel atom (ISO)

O-methyleugenol (ISO)

paclitaxel (ISO)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

phenethyl isothiocyanate (ISO)

phenylmercury acetate (ISO)

potassium chromate (ISO)

progesterone (ISO)

rifampicin (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

topotecan (ISO)

trichostatin A (ISO)

trimellitic anhydride (ISO)

valproic acid (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (ISO)

dendrite regeneration (ISO)

glial cell migration (ISO)

neuron migration (ISO)

neuron projection development (ISO)

response to axon injury (ISO)

Cellular Component

basement membrane (ISO)

collagen-containing extracellular matrix (IBA)

extracellular matrix (ISO)

Molecular Function

calcium ion binding (IEA)

protein binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	MGD data from the GO Consortium
4.	RGD automated data pipeline
5.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11102754	PMID:17513098	PMID:19295126	PMID:20551380	PMID:23979707	PMID:24006456	PMID:24895400	PMID:27068509	PMID:30624798

Genomics

Comparative Map Data

Matn2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	65,494,996 - 65,644,613 (+)	NCBI
Rnor_6.0 Ensembl	7	72,985,495 - 73,207,695 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	7	72,985,832 - 73,210,093 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	7	73,288,317 - 73,377,215 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	69,715,611 - 69,880,723 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	7	69,720,785 - 69,901,453 (+)	NCBI
Celera	7	62,599,934 - 62,745,634 (+)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

MATN2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	8	97,868,840 - 98,036,724 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	8	97,869,064 - 98,036,724 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	8	98,881,292 - 99,048,952 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	98,950,487 - 99,118,124 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	8	98,969,380 - 99,117,616	NCBI
Celera	8	95,067,247 - 95,234,866 (+)	NCBI
Cytogenetic Map	8	q22.1-q22.2	NCBI
HuRef	8	94,085,242 - 94,252,686 (+)	NCBI		HuRef
CHM1_1	8	98,921,729 - 99,089,770 (+)	NCBI		CHM1_1

Matn2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	34,306,827 - 34,436,388 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	15	34,306,823 - 34,436,419 (+)	Ensembl
GRCm38	15	34,306,681 - 34,436,242 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	34,306,677 - 34,436,273 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	34,236,436 - 34,365,997 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	15	34,251,271 - 34,380,827 (+)	NCBI			mm8
Celera	15	34,929,595 - 35,064,101 (+)	NCBI		Celera
Cytogenetic Map	15	B3.1	NCBI

Matn2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	13,646,405 - 13,759,520 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955417	13,646,379 - 13,760,050 (+)	NCBI	ChiLan1.0	ChiLan1.0

MATN2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	8	96,693,471 - 96,858,367 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	96,709,899 - 96,858,367 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	8	94,505,382 - 94,673,360 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

MATN2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	13	149,095 - 295,994 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	13	149,108 - 296,005 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Matn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936470	44,768,048 - 44,905,204 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MATN2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	38,743,977 - 38,915,088 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	38,744,025 - 38,915,083 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	41,732,770 - 41,874,322 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MATN2
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	92,787,508 - 92,951,908 (+)	NCBI
ChlSab1.1 Ensembl	8	92,787,740 - 92,952,224 (+)	Ensembl

Matn2
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624763	5,050,507 - 5,198,653 (+)	NCBI

Position Markers

RH129452

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	7	73,209,540 - 73,209,720	NCBI	Rnor6.0
Rnor_5.0	7	73,377,074 - 73,377,254	UniSTS	Rnor5.0
RGSC_v3.4	7	69,882,765 - 69,882,945	UniSTS	RGSC3.4
Celera	7	62,745,493 - 62,745,673	UniSTS
Cytogenetic Map	7	q22	UniSTS

MARC_10159-10160:996678914:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	7	73,206,561 - 73,206,971	NCBI	Rnor6.0
Rnor_5.0	7	73,374,095 - 73,374,505	UniSTS	Rnor5.0
RGSC_v3.4	7	69,879,786 - 69,880,196	UniSTS	RGSC3.4
Celera	7	62,742,514 - 62,742,924	UniSTS
Cytogenetic Map	7	q22	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	2920071	124838025	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	12328467	106995532	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	25365633	93155402	Rat
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	28204653	73204653	Rat
1641885	Alcrsp9	Alcohol response QTL 9			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	7	31381529	76381529	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	32035053	77035053	Rat
61439	Cia8	Collagen induced arthritis QTL 8	5.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	32572942	77572942	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	35867729	80867729	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	35867729	93155402	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	38547706	83547706	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	40872682	85872682	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	40872682	85872682	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	45301573	90301573	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	48118835	128611831	Rat
634326	Hc3	Hypercalciuria QTL 3	2.1		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	7	50252103	95252103	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	50704769	128085642	Rat
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	50793818	95793818	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	51251919	118477612	Rat
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	51251919	145729302	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	51252005	111589099	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	53200344	98200344	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	54259512	99259512	Rat
10059605	Kidm47	Kidney mass QTL 47	2.91	0.05	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	54534996	73293934	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	55072862	123602998	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	55072862	123602998	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	55072862	123602998	Rat
2300178	Bmd54	Bone mineral density QTL 54	5.3	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	7	55495689	100495689	Rat
2293644	Bmd29	Bone mineral density QTL 29	5.4	0.0001	femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	7	55495689	100495689	Rat
2293667	Bss42	Bone structure and strength QTL 42	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	7	55495689	100495689	Rat
2293678	Bss24	Bone structure and strength QTL 24	6.71	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	7	55495689	100495689	Rat
2293685	Bmd21	Bone mineral density QTL 21	4.2	0.0003	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	7	55495689	100495689	Rat
2293696	Bmd32	Bone mineral density QTL 32	5.1	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	7	55495689	100495689	Rat
2293707	Bss32	Bone structure and strength QTL 32	7.64	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	55495689	100495689	Rat
1300151	Bp181	Blood pressure QTL 181	3.36		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	7	61047589	113228378	Rat
2317035	Aia16	Adjuvant induced arthritis QTL 16	2.71		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	68518460	113518460	Rat
1576303	Ept7	Estrogen-induced pituitary tumorigenesis QTL 7	3.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	7	69399586	111043530	Rat
1559283	Emca4	Estrogen-induced mammary cancer QTL 4	3.7		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	7	69399586	111043530	Rat
1298528	Bp169	Blood pressure QTL 169		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	70421228	115421228	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	71448715	145729302	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	20
Count of miRNA genes:	18
Interacting mature miRNAs:	20
Transcripts:	ENSRNOT00000008361
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	1	22	8		11		1	1	24	24	31	2	1
Low	2	21	44	36	8	36	7	10	50	11	10	9	7
Below cutoff			5	5		5

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_017595223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_216941	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000008361 ⟹ ENSRNOP00000008361

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	72,985,495 - 73,207,695 (+)	Ensembl

RefSeq Acc Id:

XM_017595223 ⟹ XP_017450712

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	65,495,100 - 65,644,613 (+)	NCBI
Rnor_6.0	7	72,985,832 - 73,209,681 (+)	NCBI

Sequence:

show sequence

GGAGCTCTGCGGTCCTCTGTGGGGCGAGGCGGCGGACAACGGAGACGGATCCTCACGGCTGCGC
CCCTGCTTCACTTCCCCGGTGCTGGTGGCGGTGGCTGCAGCTGCAGACCTGCTCCTCTTGAAGA
TGGAGAAGATGTTGGTGGGGTGCTTGCTGATGCTTGGGCAGCTCCTCCTGGTCCTCCCAGTTGG
AGCCAGAGAGCGTCGTCCCCAAGACAGGTTCCCCTCCAGAGGCCGCAGGATGCATCCGCAGACT
GCACTGCTGGAGAGTTCCTGTGAGAATAAGCGGGCAGATCTGGTGTTCATCATTGACAGCTCCC
GAAGTGTCAACACCCATGACTATGCAAAGGTCAAGGAGTTCATTCTGGATATCCTGCAGTTCTT
GGATATTGGTCCTGACATTACCCGAGTAGGTCTGCTCCAATATGGCAGCACAGTCAAGAATGAG
TTCTCCCTGAAGACCTTTAAGAGGAAGTCTGATGTCGAGAGGGCTGTCAAGAGAATGAGGCATC
TATCCACAGGCACCATGACAGGGCTGGCCATCCAATATGCCCTTAACATTGCCTTCTCAGAAGC
AGAGGGGGCCCGGCCCTTGCGGGAGAATGTGCCACGGGTCATAATGATTGTGACTGATGGGAGG
CCTCAGGACTCAGTAGCTGAGGTGGCTTCCAAGGCCCGGAACACAGGCATCCTGATATTTGCCA
TCGGTGTGGGTCAAGTGGACCTGAATACGCTAAAGGCTATCGGGAGTGAGCCCCACAAGGACCA
TGTCTTCCTGGTGGCCAATTTCAGCCAGATTGAGTCCTTGACCTCGGTGTTCCAGAACAAATTG
TGCACGGTCCACATGTGCAGCGTCTTGGAACACAACTGTGCCCACTTCTGCATCAACACGCCTG
GCTCGTACACCTGCAAGTGCAAGCAAGGGTACATTCTCGGCCCGGATCAGAAGACGTGCAGAAT
CCAGGATCTGTGTGCCACAGAGGACCACGGCTGTGAGCAGCTGTGCGTGAACATGCTGGGTTCC
TTCGTCTGCCATTGCTACAGTGGCTACACCCTGGCTGAGGATGGGAAGCAATGTACAGCTGTGG
ACTACTGTGCCTCAGAAAATCACAGATGTGAGCACGAGTGTGTAAATGCTGAAGGGTCCTACCT
GTGCAGGTGCCACGAAGGATTTGCTCTTAATGTAGACAAGAAAACATGCTCAAAGATAGACTAC
TGTGCCTCCTCGGATCATGGATGTCAGCATGAGTGTGTCAATGCCCAGACATCTGCTTTCTGCC
GCTGCCTGAAAGGCTTCATGCTAAATCCAGACAGGAAAACCTGCCGAAGGATCAACTACTGTGC
TCTGAACAAACCAGGCTGTGAGCACGAGTGTGTGAACACAGAGGAGGGTCACTACTGCCGCTGC
CGTCGGGGCTACACTCTGGATCCCAATGGCAAGACCTGCAGCCGGGTGGACCACTGTGCACAGC
AGGACCATGGCTGTGAGCAGCTGTGCCTGAACACGGAGGAGTCCTTTGTCTGCCAGTGCTCCGA
AGGCTTCCTTATTAACGATGACCTCAAGACCTGCTCCAGGGCAGATTACTGCTTGCTGAGCAAC
CACGGTTGTGAATACTCCTGTGTCAACACCGACAAGTCCTTTGCCTGCCAATGTCCTGAAGGTC
ACGTGCTCCGGAGCGACGGGAAGACCTGTGCAAAACTGGACTCTTGTGCTTTGGGGGACCATGG
TTGTGAACATTCATGCGTAAGCAGTGAGGACTCATTCGTGTGTCGGTGCTTTGAGGGATATGTC
CTTCGTGATGATGGGAAGACCTGCAGAAGGGAAGATGTCTGCCAGGCTGTAGACCATGGCTGTG
AGCACCTTTGTGTGAACAGTGGCGAATCATACATCTGCAAGTGCCTGGAGGGATTCAGGCTTGC
TGAGGATGGGAAACGCTGCAGGAGGAAGGATGTCTGCAAGTCCATCCAGCATGGCTGTGAGCAC
ATCTGTGTGAACAATGGGAATTCCTATCTGTGCAGGTGCTCAGAGGGCTTTGTCCTCGCTGAGG
ACGGAAGGCACTGCAAGAGATGCACTGAAGGCCCAATTGACCTAGTCTTTGTGATTGATGGATC
CAAGAGCCTTGGAGAAGAGAATTTTGAGATTGTGAAGCATTTTGTCACTGGGATCATAGATTCC
TTGGCAGTTTCCCCCAAAGCTGCTCGCGTGGGGCTGCTGCAGTATTCCACACAGGTCCGCACAG
AGTTTACCCTGAAGGGCTTCAGCTCAGCCAAGGACATGAAAAAAGCTGTGGCCCACATGAAATA
CATGGGCAAAGGCTCTATGACTGGGCTGGCCCTGAAACACATGTATGAGAGAAGTTTTACCCAA
GTAGAAGGAGCCAGGCCCCTCTCCACACGGGTGCCCAGAGCAGCCATTGTGTTCACGGACGGAC
GGGCTCAGGATGATGTCTCCGAGTGGGCCAGGAAAGCCAAGGCCAATGGTATCACTATGTATGC
TGTTGGGATAGGAAAAGCCATTGAGGAAGAACTACAGGAGATTGCCTCTGAGCCCATTGACAAG
CATCTCTTCTATGCAGAAGACTTCAGCACAATGGGTGAAATAAGTGAAAAGCTGAAGCTAGGCA
TCTGTGAAGCTCTAGAAGACTCTGATGGAAGACAGGACTCACCAGCAGGGGATCTGCCAAGGCA
GGTCCACCAGCCAACAGTGCAACATAGATACCTGTTTGAAGACAATCTTTCACGGTCTACACAA
AAACTCTTGCACTCAACACAATCTTCAGGAAACCCTCGGGAAGAAACCCAAGACCAATGCAAAT
GTGAAAACCTTATACAGTTCCAGAACCTTGCAAATGAAGAAGTAAGAAAATTAACCCAACGCTT
AGAAGAAATGACTCAAAGAATGGAAGCCTTGGAAAATCGCCTAAGATACAGATGAAGACTAGAA
GTGCTTTTATATCTGTATTTGTACAACATTGTAAAACGGATTTTAACACAGGTAGTGGAGCCTG
AAAGCTCATACCATAAGTAGATCTACAAGCTATAAAGCAAAATACAACCAGTACAGAAGACACT
GGATTGCTTGACTGCTGGACAAGAGAAAATGGAGACATTGAGGTGTCTAAATCCAATGGGGGTG
GGGGGAGGAATCCTGAGTTTACCAGAATAAGCTGTGCAGGGTCCCATGATGTTCTGTGGACATG
ACTTCCTTCTGCCTCAACACTGAAATTTCATTTGACAACTGAAGTATCTTAATTCAGCAGAAAA
CTGACTCTACAAATTGCTTTTTTTTTTGTACTGCAATTTACCTTGATGTGTATACAGACATGTG
CATAAGTCACAGGGACCTGTGTTCTGTAATAAGTTGAATTTCTACACAATATTAAAGTTCACCA
CTCCAGAAAAGAATGTTGAGTAAAGTTCCTATTTTAAATTTGA

hide sequence

RefSeq Acc Id:

XM_017603341 ⟹ XP_017458830

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	7	62,599,934 - 62,745,634 (+)	NCBI

Sequence:

show sequence

GGAGCTCTGCGGTCCTCTGTGGGGCGAGGCGGCGGACAACGGAGACGGATCCTCACGGCTGCGC
CCCTGCTTCACTTCCCCGGTGCTGGTGGCGGTGGCTGCAGCTGCAGACCTGCTCCTCTTGAAGA
TGGAGAAGATGTTGGTGGGGTGCTTGCTGATGCTTGGGCAGCTCCTCCTGGTCCTCCCAGTTGG
AGCCAGAGAGCGTCGTCCCCAAGACAGGTTCCCCTCCAGAGGCCGCAGGATGCATCCGCAGACT
GCACTGCTGGAGAGTTCCTGTGAGAATAAGCGGGCAGATCTGGTGTTCATCATTGACAGCTCCC
GAAGTGTCAACACCCATGACTATGCAAAGGTCAAGGAGTTCATTCTGGATATCCTGCAGTTCTT
GGATATTGGTCCTGACATTACCCGAGTAGGTCTGCTCCAATATGGCAGCACAGTCAAGAATGAG
TTCTCCCTGAAGACCTTTAAGAGGAAGTCTGATGTCGAGAGGGCTGTCAAGAGAATGAGGCATC
TATCCACAGGCACCATGACAGGGCTGGCCATCCAATATGCCCTTAACATTGCCTTCTCAGAAGC
AGAGGGGGCCCGGCCCTTGCGGGAGAATGTGCCACGGGTCATAATGATTGTGACTGATGGGAGG
CCTCAGGACTCAGTAGCTGAGGTGGCTTCCAAGGCCCGGAACACAGGCATCCTGATATTTGCCA
TCGGTGTGGGTCAAGTGGACCTGAATACGCTAAAGGCTATCGGGAGTGAGCCCCACAAGGACCA
TGTCTTCCTGGTGGCCAATTTCAGCCAGATTGAGTCCTTGACCTCGGTGTTCCAGAACAAATTG
TGCAGTAAGTACGGTGCCTCTGTGGTTCATTTGTCTTCAAGGCCTTCATTCTGTTGTCACTTTG
CCTCAGTCCAGGATCTGTGTGCCACAGAGGACCACGGCTGTGAGCAGCTGTGCGTGAACATGCT
GGGTTCCTTCGTCTGCCATTGCTACAGTGGCTACACCCTGGCTGAGGATGGGAAGCAATGTACA
GCTGTGGACTACTGTGCCTCAGAAAATCACAGATGTGAGCACGAGTGTGTAAATGCTGAAGGGT
CCTACCTGTGCAGGTGCCACGAAGGATTTGCTCTTAATGTAGACAAGAAAACATGCTCAAAGAT
AGACTACTGTGCCTCCTCGGATCATGGATGTCAGCATGAGTGTGTCAATGCCCAGACATCTGCT
TTCTGCCGCTGCCTGAAAGGCTTCATGCTAAATCCAGACAGGAAAACCTGCCGAAGGATCAACT
ACTGTGCTCTGAACAAACCAGGCTGTGAGCACGAGTGTGTGAACACAGAGGAGGGTCACTACTG
CCGCTGCCGTCGGGGCTACACTCTGGATCCCAATGGCAAGACCTGCAGCCGGGTGGACCACTGT
GCACAGCAGGACCATGGCTGTGAGCAGCTGTGCCTGAACACGGAGGAGTCCTTTGTCTGCCAGT
GCTCCGAAGGCTTCCTTATTAACGATGACCTCAAGACCTGCTCCAGGGCAGATTACTGCTTGCT
GAGCAACCACGGTTGTGAATACTCCTGTGTCAACACCGACAAGTCCTTTGCCTGCCAATGTCCT
GAAGGTCACGTGCTCCGGAGCGACGGGAAGACCTGTGCAAAACTGGACTCTTGTGCTTTGGGGG
ACCATGGTTGTGAACATTCATGCGTAAGCAGTGAGGACTCATTCGTGTGTCGGTGCTTTGAGGG
ATATGTCCTTCGTGATGATGGGAAGACCTGCAGAAGGGAAGATGTCTGCCAGGCTGTAGACCAT
GGCTGTGAGCACCTTTGTGTGAACAGTGGCGAATCATACATCTGCAAGTGCCTGGAGGGATTCA
GGCTTGCTGAGGATGGGAAACGCTGCAGGAGGAAGGATGTCTGCAAGTCCATCCAGCATGGCTG
TGAGCACATCTGTGTGAACAATGGGAATTCCTATCTGTGCAGGTGCTCAGAGGGCTTTGTCCTC
GCTGAGGACGGAAGGCACTGCAAGAGATGCACTGAAGGCCCAATTGACCTAGTCTTTGTGATTG
ATGGATCCAAGAGCCTTGGAGAAGAGAATTTTGAGATTGTGAAGCATTTTGTCACTGGGATCAT
AGATTCCTTGGCAGTTTCCCCCAAAGCTGCTCGCGTGGGGCTGCTGCAGTATTCCACACAGGTC
CGCACAGAGTTTACCCTGAAGGGCTTCAGCTCAGCCAAGGACATGAAAAAAGCTGTGGCCCACA
TGAAATACATGGGCAAAGGCTCTATGACTGGGCTGGCCCTGAAACACATGTATGAGAGAAGTTT
TACCCAAGTAGAAGGAGCCAGGCCCCTCTCCACACGGGTGCCCAGAGCAGCCATTGTGTTCACG
GACGGACGGGCTCAGGATGATGTCTCCGAGTGGGCCAGGAAAGCCAAGGCCAATGGTATCACTA
TGTATGCTGTTGGGATAGGAAAAGCCATTGAGGAAGAACTACAGGAGATTGCCTCTGAGCCCAT
TGACAAGCATCTCTTCTATGCAGAAGACTTCAGCACAATGGGTGAAATAAGTGAAAAGCTGAAG
CTAGGCATCTGTGAAGCTCTAGAAGACTCTGATGGAAGACAGGACTCACCAGCAGGGGATCTGC
CAAGGCAGGTCCACCAGCCAACAGTGCAACATAGATACCTGTTTGAAGACAATCTTTCACGGTC
TACACAAAAACTCTTGCACTCAACACAATCTTCAGGAAACCCTCGGGAAGAAACCCAAGACCAA
TGCAAATGTGAAAACCTTATACAGTTCCAGAACCTTGCAAATGAAGAAGTAAGAAAATTAACCC
AACGCTTAGAAGAAATGACTCAAAGAATGGAAGCCTTGGAAAATCGCCTAAGATACAGATGAAG
ACTAGAAGTGCTTTTATATCTGTATTTGTACAACATTGTAAAACGGATTTTAACACAGGTAGTG
GAGCCTGAAAGCTCATACCATAAGTAGATCTACAAGCTATAAAGCAAAATACAACCAGTACAGA
AGACACTGGATTGCTTGACTGCTGGACAAGAGAAAATGGAGACATTGAGGTGTCTAAATCCAAT
GGGGGTGGGGGGAGGAATCCTGAGTTTACCAGAATAAGCTGTGCAGGGTCCCATGATGTTCTGT
GGACATGACTTCCTTCTGCCTCAACACTGAAATTTCATTTGACAACTGAAGTATCTTAATTCAG
CAGAAAACTGACTCTACAAATTGCTTTTTTTTTTGTACTGCAATTTACCTTGATGTGTATACAG
ACATGTGCATAAGTCACAGGGACCTGTGTTCTGTAATAAGTTGAATTTCTACACAATATTAAAG
TTCACCACTCCAGAAAAGAATGTTGAGTAAAGTTCCTATTTTAAATTTGA

hide sequence

RefSeq Acc Id:

XM_039080152 ⟹ XP_038936080

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	65,495,100 - 65,644,613 (+)	NCBI

RefSeq Acc Id:

XM_216941 ⟹ XP_216941

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	65,494,996 - 65,644,613 (+)	NCBI
Rnor_6.0	7	72,985,832 - 73,210,093 (+)	NCBI
Rnor_5.0	7	73,288,317 - 73,377,215 (+)	NCBI
RGSC_v3.4	7	69,715,611 - 69,880,723 (+)	RGD

Sequence:

show sequence

GGAGCTCTGCGGTCCTCTGTGGGGCGAGGCGGCGGACAACGGAGACGGATCCTCACGGCTGCGC
CCCTGCTTCACTTCCCCGGTGCTGGTGGCGGTGGCTGCAGCTGCAGACCTGCTCCTCTTGAAGA
TGGAGAAGATGTTGGTGGGGTGCTTGCTGATGCTTGGGCAGCTCCTCCTGGTCCTCCCAGTTGG
AGCCAGAGAGCGTCGTCCCCAAGACAGGTTCCCCTCCAGAGGCCGCAGGATGCATCCGCAGACT
GCACTGCTGGAGAGTTCCTGTGAGAATAAGCGGGCAGATCTGGTGTTCATCATTGACAGCTCCC
GAAGTGTCAACACCCATGACTATGCAAAGGTCAAGGAGTTCATTCTGGATATCCTGCAGTTCTT
GGATATTGGTCCTGACATTACCCGAGTAGGTCTGCTCCAATATGGCAGCACAGTCAAGAATGAG
TTCTCCCTGAAGACCTTTAAGAGGAAGTCTGATGTCGAGAGGGCTGTCAAGAGAATGAGGCATC
TATCCACAGGCACCATGACAGGGCTGGCCATCCAATATGCCCTTAACATTGCCTTCTCAGAAGC
AGAGGGGGCCCGGCCCTTGCGGGAGAATGTGCCACGGGTCATAATGATTGTGACTGATGGGAGG
CCTCAGGACTCAGTAGCTGAGGTGGCTTCCAAGGCCCGGAACACAGGCATCCTGATATTTGCCA
TCGGTGTGGGTCAAGTGGACCTGAATACGCTAAAGGCTATCGGGAGTGAGCCCCACAAGGACCA
TGTCTTCCTGGTGGCCAATTTCAGCCAGATTGAGTCCTTGACCTCGGTGTTCCAGAACAAATTG
TGCACGGTCCACATGTGCAGCGTCTTGGAACACAACTGTGCCCACTTCTGCATCAACACGCCTG
GCTCGTACACCTGCAAGTGCAAGCAAGGGTACATTCTCGGCCCGGATCAGAAGACGTGCAGAAT
CCAGGATCTGTGTGCCACAGAGGACCACGGCTGTGAGCAGCTGTGCGTGAACATGCTGGGTTCC
TTCGTCTGCCATTGCTACAGTGGCTACACCCTGGCTGAGGATGGGAAGCAATGTACAGCTGTGG
ACTACTGTGCCTCAGAAAATCACAGATGTGAGCACGAGTGTGTAAATGCTGAAGGGTCCTACCT
GTGCAGGTGCCACGAAGGATTTGCTCTTAATGTAGACAAGAAAACATGCTCAAAGATAGACTAC
TGTGCCTCCTCGGATCATGGATGTCAGCATGAGTGTGTCAATGCCCAGACATCTGCTTTCTGCC
GCTGCCTGAAAGGCTTCATGCTAAATCCAGACAGGAAAACCTGCCGAAGGATCAACTACTGTGC
TCTGAACAAACCAGGCTGTGAGCACGAGTGTGTGAACACAGAGGAGGGTCACTACTGCCGCTGC
CGTCGGGGCTACACTCTGGATCCCAATGGCAAGACCTGCAGCCGGGTGGACCACTGTGCACAGC
AGGACCATGGCTGTGAGCAGCTGTGCCTGAACACGGAGGAGTCCTTTGTCTGCCAGTGCTCCGA
AGGCTTCCTTATTAACGATGACCTCAAGACCTGCTCCAGGGCAGATTACTGCTTGCTGAGCAAC
CACGGTTGTGAATACTCCTGTGTCAACACCGACAAGTCCTTTGCCTGCCAATGTCCTGAAGGTC
ACGTGCTCCGGAGCGACGGGAAGACCTGTGCAAAACTGGACTCTTGTGCTTTGGGGGACCATGG
TTGTGAACATTCATGCGTAAGCAGTGAGGACTCATTCGTGTGTCGGTGCTTTGAGGGATATGTC
CTTCGTGATGATGGGAAGACCTGCAGAAGGGAAGATGTCTGCCAGGCTGTAGACCATGGCTGTG
AGCACCTTTGTGTGAACAGTGGCGAATCATACATCTGCAAGTGCCTGGAGGGATTCAGGCTTGC
TGAGGATGGGAAACGCTGCAGGAGGAAGGATGTCTGCAAGTCCATCCAGCATGGCTGTGAGCAC
ATCTGTGTGAACAATGGGAATTCCTATCTGTGCAGGTGCTCAGAGGGCTTTGTCCTCGCTGAGG
ACGGAAGGCACTGCAAGAGATGCACTGAAGGCCCAATTGACCTAGTCTTTGTGATTGATGGATC
CAAGAGCCTTGGAGAAGAGAATTTTGAGATTGTGAAGCATTTTGTCACTGGGATCATAGATTCC
TTGGCAGTTTCCCCCAAAGCTGCTCGCGTGGGGCTGCTGCAGTATTCCACACAGGTCCGCACAG
AGTTTACCCTGAAGGGCTTCAGCTCAGCCAAGGACATGAAAAAAGCTGTGGCCCACATGAAATA
CATGGGCAAAGGCTCTATGACTGGGCTGGCCCTGAAACACATGTATGAGAGAAGTTTTACCCAA
GTAGAAGGAGCCAGGCCCCTCTCCACACGGGTGCCCAGAGCAGCCATTGTGTTCACGGACGGAC
GGGCTCAGGATGATGTCTCCGAGTGGGCCAGGAAAGCCAAGGCCAATGGTATCACTATGTATGC
TGTTGGGATAGGAAAAGCCATTGAGGAAGAACTACAGGAGATTGCCTCTGAGCCCATTGACAAG
CATCTCTTCTATGCAGAAGACTTCAGCACAATGGGTGAAATAAGTGAAAAGCTGAAGCTAGGCA
TCTGTGAAGCTCTAGAAGACTCTGATGGAAGACAGGACTCACCAGCAGGGGATCTGCCAAGGCA
GGTCCACCAGCCAACAGAATCTGAGCCAGTCACCATAAGTATCAGAGACCTACTTTCCTGTTCT
AATTTTGCAGTGCAACATAGATACCTGTTTGAAGACAATCTTTCACGGTCTACACAAAAACTCT
TGCACTCAACACAATCTTCAGGAAACCCTCGGGAAGAAACCCAAGACCAATGCAAATGTGAAAA
CCTTATACAGTTCCAGAACCTTGCAAATGAAGAAGTAAGAAAATTAACCCAACGCTTAGAAGAA
ATGACTCAAAGAATGGAAGCCTTGGAAAATCGCCTAAGATACAGATGAAGACTAGAAGTGCTTT
TATATCTGTATTTGTACAACATTGTAAAACGGATTTTAACACAGGTAGTGGAGCCTGAAAGCTC
ATACCATAAGTAGATCTACAAGCTATAAAGCAAAATACAACCAGTACAGAAGACACTGGATTGC
TTGACTGCTGGACAAGAGAAAATGGAGACATTGAGGTGTCTAAATCCAATGGGGGTGGGGGGAG
GAATCCTGAGTTTACCAGAATAAGCTGTGCAGGGTCCCATGATGTTCTGTGGACATGACTTCCT
TCTGCCTCAACACTGAAATTTCATTTGACAACTGAAGTATCTTAATTCAGCAGAAAACTGACTC
TACAAATTGCTTTTTTTTTTGTACTGCAATTTACCTTGATGTGTATACAGACATGTGCATAAGT
CACAGGGACCTGTGTTCTGTAATAAGTTGAATTTCTACACAATATTAAAGTTCACCACTCCAGA
AAAGAATGTTGAGTAAAGTTCCTATTTTAAATTTGAGAAGGGGTCATGCTATTTGTTGGTTGTT
ACTCAGACTGCCTCAAACTCCCAATTCTCCGGTTCCCACCTTCAGAGTACTGGGAACACAGGCA
ATGGCACCAAGTTCAGACTCACTGTGAGTATAAACTATACATGAAAAAAGCCAGTATAACCAGG
GAAAAGCAGGTTTAGATTCTGTGTATTTCTTCTTTTTTGAAACCTCGTCAGCTCAACACAGCCA
CTGACTTGACTAGTGATGATTACTAAGGTAGAAATACAGGTCCTTGCATGCTGCTAGGGAGAGC
ACAAACTGACAGGCTCTGGACACAAGACTTTAACTATGATAACTATAGCAGCTGCCATCTGAGA
TTAAACTAAGTGGTCTTAACGTATACCAGGGAGACCTGCAGAGAAATGTCACAAGTGTATAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_017450712	(Get FASTA)	NCBI Sequence Viewer
	XP_038936080	(Get FASTA)	NCBI Sequence Viewer
	XP_216941	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM16425	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_216941 ⟸ XM_216941

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEKMLVGCLLMLGQLLLVLPVGARERRPQDRFPSRGRRMHPQTALLESSCENKRADLVFIIDSS
RSVNTHDYAKVKEFILDILQFLDIGPDITRVGLLQYGSTVKNEFSLKTFKRKSDVERAVKRMRH
LSTGTMTGLAIQYALNIAFSEAEGARPLRENVPRVIMIVTDGRPQDSVAEVASKARNTGILIFA
IGVGQVDLNTLKAIGSEPHKDHVFLVANFSQIESLTSVFQNKLCTVHMCSVLEHNCAHFCINTP
GSYTCKCKQGYILGPDQKTCRIQDLCATEDHGCEQLCVNMLGSFVCHCYSGYTLAEDGKQCTAV
DYCASENHRCEHECVNAEGSYLCRCHEGFALNVDKKTCSKIDYCASSDHGCQHECVNAQTSAFC
RCLKGFMLNPDRKTCRRINYCALNKPGCEHECVNTEEGHYCRCRRGYTLDPNGKTCSRVDHCAQ
QDHGCEQLCLNTEESFVCQCSEGFLINDDLKTCSRADYCLLSNHGCEYSCVNTDKSFACQCPEG
HVLRSDGKTCAKLDSCALGDHGCEHSCVSSEDSFVCRCFEGYVLRDDGKTCRREDVCQAVDHGC
EHLCVNSGESYICKCLEGFRLAEDGKRCRRKDVCKSIQHGCEHICVNNGNSYLCRCSEGFVLAE
DGRHCKRCTEGPIDLVFVIDGSKSLGEENFEIVKHFVTGIIDSLAVSPKAARVGLLQYSTQVRT
EFTLKGFSSAKDMKKAVAHMKYMGKGSMTGLALKHMYERSFTQVEGARPLSTRVPRAAIVFTDG
RAQDDVSEWARKAKANGITMYAVGIGKAIEEELQEIASEPIDKHLFYAEDFSTMGEISEKLKLG
ICEALEDSDGRQDSPAGDLPRQVHQPTESEPVTISIRDLLSCSNFAVQHRYLFEDNLSRSTQKL
LHSTQSSGNPREETQDQCKCENLIQFQNLANEEVRKLTQRLEEMTQRMEALENRLRYR

hide sequence

RefSeq Acc Id:

XP_017458830 ⟸ XM_017603341

- Peptide Label:

isoform X3

- Sequence:

show sequence

MEKMLVGCLLMLGQLLLVLPVGARERRPQDRFPSRGRRMHPQTALLESSCENKRADLVFIIDSS
RSVNTHDYAKVKEFILDILQFLDIGPDITRVGLLQYGSTVKNEFSLKTFKRKSDVERAVKRMRH
LSTGTMTGLAIQYALNIAFSEAEGARPLRENVPRVIMIVTDGRPQDSVAEVASKARNTGILIFA
IGVGQVDLNTLKAIGSEPHKDHVFLVANFSQIESLTSVFQNKLCSKYGASVVHLSSRPSFCCHF
ASVQDLCATEDHGCEQLCVNMLGSFVCHCYSGYTLAEDGKQCTAVDYCASENHRCEHECVNAEG
SYLCRCHEGFALNVDKKTCSKIDYCASSDHGCQHECVNAQTSAFCRCLKGFMLNPDRKTCRRIN
YCALNKPGCEHECVNTEEGHYCRCRRGYTLDPNGKTCSRVDHCAQQDHGCEQLCLNTEESFVCQ
CSEGFLINDDLKTCSRADYCLLSNHGCEYSCVNTDKSFACQCPEGHVLRSDGKTCAKLDSCALG
DHGCEHSCVSSEDSFVCRCFEGYVLRDDGKTCRREDVCQAVDHGCEHLCVNSGESYICKCLEGF
RLAEDGKRCRRKDVCKSIQHGCEHICVNNGNSYLCRCSEGFVLAEDGRHCKRCTEGPIDLVFVI
DGSKSLGEENFEIVKHFVTGIIDSLAVSPKAARVGLLQYSTQVRTEFTLKGFSSAKDMKKAVAH
MKYMGKGSMTGLALKHMYERSFTQVEGARPLSTRVPRAAIVFTDGRAQDDVSEWARKAKANGIT
MYAVGIGKAIEEELQEIASEPIDKHLFYAEDFSTMGEISEKLKLGICEALEDSDGRQDSPAGDL
PRQVHQPTVQHRYLFEDNLSRSTQKLLHSTQSSGNPREETQDQCKCENLIQFQNLANEEVRKLT
QRLEEMTQRMEALENRLRYR

hide sequence

RefSeq Acc Id:

XP_017450712 ⟸ XM_017595223

- Peptide Label:

isoform X2

- Sequence:

show sequence

MEKMLVGCLLMLGQLLLVLPVGARERRPQDRFPSRGRRMHPQTALLESSCENKRADLVFIIDSS
RSVNTHDYAKVKEFILDILQFLDIGPDITRVGLLQYGSTVKNEFSLKTFKRKSDVERAVKRMRH
LSTGTMTGLAIQYALNIAFSEAEGARPLRENVPRVIMIVTDGRPQDSVAEVASKARNTGILIFA
IGVGQVDLNTLKAIGSEPHKDHVFLVANFSQIESLTSVFQNKLCTVHMCSVLEHNCAHFCINTP
GSYTCKCKQGYILGPDQKTCRIQDLCATEDHGCEQLCVNMLGSFVCHCYSGYTLAEDGKQCTAV
DYCASENHRCEHECVNAEGSYLCRCHEGFALNVDKKTCSKIDYCASSDHGCQHECVNAQTSAFC
RCLKGFMLNPDRKTCRRINYCALNKPGCEHECVNTEEGHYCRCRRGYTLDPNGKTCSRVDHCAQ
QDHGCEQLCLNTEESFVCQCSEGFLINDDLKTCSRADYCLLSNHGCEYSCVNTDKSFACQCPEG
HVLRSDGKTCAKLDSCALGDHGCEHSCVSSEDSFVCRCFEGYVLRDDGKTCRREDVCQAVDHGC
EHLCVNSGESYICKCLEGFRLAEDGKRCRRKDVCKSIQHGCEHICVNNGNSYLCRCSEGFVLAE
DGRHCKRCTEGPIDLVFVIDGSKSLGEENFEIVKHFVTGIIDSLAVSPKAARVGLLQYSTQVRT
EFTLKGFSSAKDMKKAVAHMKYMGKGSMTGLALKHMYERSFTQVEGARPLSTRVPRAAIVFTDG
RAQDDVSEWARKAKANGITMYAVGIGKAIEEELQEIASEPIDKHLFYAEDFSTMGEISEKLKLG
ICEALEDSDGRQDSPAGDLPRQVHQPTVQHRYLFEDNLSRSTQKLLHSTQSSGNPREETQDQCK
CENLIQFQNLANEEVRKLTQRLEEMTQRMEALENRLRYR

hide sequence

RefSeq Acc Id:

ENSRNOP00000008361 ⟸ ENSRNOT00000008361

RefSeq Acc Id:	XP_038936080 ⟸ XM_039080152
- Peptide Label:	isoform X3

Protein Domains

EGF-like VWFA

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695289

Promoter ID:

EPDNEW_R5806

Type:

initiation region

Name:

Matn2_1

Description:

matrilin 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	72,985,701 - 72,985,761	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305353	AgrOrtholog
Ensembl Genes	ENSRNOG00000006060	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000008361	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000008361	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.410	UniProtKB/TrEMBL
InterPro	EG-like_dom	UniProtKB/TrEMBL
	EGF-like_Ca-bd	UniProtKB/TrEMBL
	EGF-type_Asp/Asn_hydroxyl_site	UniProtKB/TrEMBL
	Growth_fac_rcpt_N_dom	UniProtKB/TrEMBL
	Matrilin-2	UniProtKB/TrEMBL
	Matrilin_coiled-coil_trimer	UniProtKB/TrEMBL
	VWF_A	UniProtKB/TrEMBL
	vWFA_dom_sf	UniProtKB/TrEMBL
NCBI Gene	299996	ENTREZGENE
PANTHER	PTHR24020:SF35	UniProtKB/TrEMBL
Pfam	EGF_CA	UniProtKB/TrEMBL
	Matrilin_ccoil	UniProtKB/TrEMBL
	VWA	UniProtKB/TrEMBL
PhenoGen	Matn2	PhenoGen
PROSITE	ASX_HYDROXYL	UniProtKB/TrEMBL
	EGF_2	UniProtKB/TrEMBL
	EGF_3	UniProtKB/TrEMBL
	VWFA	UniProtKB/TrEMBL
SMART	EGF	UniProtKB/TrEMBL
	EGF_CA	UniProtKB/TrEMBL
	VWA	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53300	UniProtKB/TrEMBL
	SSF57184	UniProtKB/TrEMBL
UniProt	F1LXS3_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Matn2	matrilin 2	Matn2_predicted	matrilin 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Matn2_predicted	matrilin 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)