Atmin-ps2 (ATM interactor, pseudogene 2) - Rat Genome Database

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Gene: Atmin-ps2 (ATM interactor, pseudogene 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Atmin-ps2
Name: ATM interactor, pseudogene 2
RGD ID: 1585800
Description:
Type: pseudo (Ensembl: pseudogene)
RefSeq Status: MODEL
Previously known as: ATM interactor-like; LOC680989; similar to similar to mKIAA0431 protein
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Atmin  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8768,646,981 - 68,652,267 (-)NCBIGRCr8
mRatBN7.2766,762,283 - 66,767,117 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl766,764,632 - 66,767,075 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0774,323,701 - 74,328,681 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl774,326,051 - 74,328,603 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0774,490,907 - 74,495,832 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4771,069,690 - 71,072,133 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera763,847,857 - 63,852,726 (-)NCBICelera
Cytogenetic Map7q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.


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Variants in Atmin-ps2
11 total Variants

1 to 10 of 34 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat

1 to 10 of 34 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 88 87 56 25 56 6 215 97 93 45 60 31


RefSeq Transcripts XM_008765465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000079159   ⟹   ENSRNOP00000074066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl766,764,632 - 66,767,075 (-)Ensembl
Rnor_6.0 Ensembl774,326,051 - 74,328,603 (-)Ensembl
RefSeq Acc Id: XM_008765465   ⟹   XP_008763687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0774,323,701 - 74,328,681 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008776454   ⟹   XP_008774676
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera763,847,857 - 63,852,726 (-)NCBI
Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K752-F1-model_v2 AlphaFold A0A0G2K752 1-813 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-33660 BioCyc
Ensembl Genes ENSRNOG00000051838 Ensembl
NCBI Gene 680989 ENTREZGENE
PhenoGen Atmin-ps2 PhenoGen
RatGTEx ENSRNOG00000051838 RatGTEx


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Atmin-ps2  ATM interactor, pseudogene 2  LOC680989  similar to similar to mKIAA0431 protein  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC680989  similar to similar to mKIAA0431 protein      Symbol and Name status set to provisional 70820 PROVISIONAL