Hc3 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Hc3 (Hypercalciuria QTL 3) Rattus norvegicus

Symbol: Hc3
Name: Hypercalciuria QTL 3
RGD ID: 634326
Trait: urine calcium amount   (VT:0002985)    
Measurement Type: urine calcium excretion rate   (CMO:0000763)    
LOD Score: 2.1
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2742,787,314 - 87,787,314RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0750,252,103 - 95,252,103RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0750,418,802 - 95,418,802RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4747,007,003 - 92,007,003RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.1747,027,733 - 92,027,733RGD
Cross Type: intercross
Strains Crossed: WKY GHS 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
GHS  (IEA)
WKY  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Quantitative trait loci for hypercalciuria in a rat model of kidney stone disease. Hoopes RR Jr, etal., J Am Soc Nephrol 2003 Jul;14(7):1844-50.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1308322Myf5myogenic factor 574280294642806177Rat
3134Myf6myogenic factor 674281300842814852Rat
41050361LOC120093580uncharacterized LOC12009358074281525443016555Rat
620779Ptprqprotein tyrosine phosphatase, receptor type, Q74283445543016807Rat
1589018Otoglotogelin-like74306580043211400Rat
620013Ppp1r12aprotein phosphatase 1, regulatory subunit 12A74348280843593689Rat
69065Pawrpro-apoptotic WT1 regulator74364502843725033Rat
41023123Rpl26-ps10ribosomal protein L26, pseudogene 1074370389943716963Rat
41368650LOC120093977small nucleolar RNA SNORA4874371172743711871Rat
41136792LOC120093582uncharacterized LOC12009358274374690243769702Rat
40962771LOC120093799uncharacterized LOC12009379974380844543814458Rat
3803Syt1synaptotagmin 174381320444358020Rat
7658882LOC102547595uncharacterized LOC10254759574397609244001594Rat
9447173Brcc3dcBRCA1/BRCA2-containing complex, subunit 3, domain containing74401488944016646Rat
6493321Rpl31-ps2ribosomal protein L31, pseudogene 274430012344300616Rat
41207487LOC120093800uncharacterized LOC12009380074435876544363310Rat
1594372Hdac1-ps6Histone deacetylase 1, pseudogene 674463472444645145Rat
1306259Nav3neuron navigator 374505220645840471Rat
41236746LOC120093801uncharacterized LOC12009380174505690445073781Rat
1310258E2f7E2F transcription factor 774615053346192739Rat
41210402LOC120093928U6 spliceosomal RNA74633498146335086Rat
61950Csrp2cysteine and glycine-rich protein 274634910946367743Rat
1595790Zdhhc17zinc finger DHHC-type palmitoyltransferase 1774636996346433691Rat
41121043LOC120093583uncharacterized LOC12009358374642615046433558Rat
1588873Pes1-ps4pescadillo ribosomal biogenesis factor 1, pseudogene 474647604946477682Rat
41017733LOC120093585uncharacterized LOC12009358574655092746568690Rat
41054798LOC120093925U6 spliceosomal RNA74655878746558886Rat
2319089Spdl1-ps1spindle apparatus coiled-coil protein 1, pseudogene 174658565446590216Rat
1561474Osbpl8oxysterol binding protein-like 874659694446749888Rat
41366535LOC120093586uncharacterized LOC12009358674667307546678086Rat
1596694Eif5-ps8eukaryotic translation initiation factor 5, pseudogene 874672305846724664Rat
1560748Bbs10Bardet-Biedl syndrome 1074675102846754132Rat
7721657LOC102548498uncharacterized LOC10254849874688330346907932Rat
71094Nap1l1nucleosome assembly protein 1-like 174693327846957853Rat
41211178LOC120093965small nucleolar RNA SNORA4874694066446940806Rat
3836Phlda1pleckstrin homology-like domain, family A, member 174696743346969637Rat
7728983LOC102548561uncharacterized LOC10254856174720865647220235Rat
11427685LOC108351449uncharacterized LOC10835144974732740847337493Rat
41375281LOC120093587uncharacterized LOC12009358774734474247363207Rat
11431842LOC108351450uncharacterized LOC10835145074744578247461331Rat
1306183Krr1KRR1, small subunit processome component homolog74747555747486996Rat
1305978Glipr1GLI pathogenesis-related 174748734247498974Rat
1310205Glipr1l2GLIPR1 like 274753300947546737Rat
1563000Glipr1l1GLIPR1 like 174755063747577611Rat
1309826Caps2calcyphosine 274758063647641598Rat
2318888Rpl27a-ps2ribosomal protein L27a, pseudogene 274764285247675130Rat
628829Kcnc2potassium voltage-gated channel subfamily C member 274770003547883979Rat
41098017LOC120093919U6 spliceosomal RNA74817766848177762Rat
2301984Atxn7l3bataxin 7-like 3B74832245148325975Rat
7709076LOC102546573uncharacterized LOC10254657374841026548417520Rat
6486766Tuba1b-ps5tubulin, alpha 1B, pseudogene 574856449248565895Rat
11414169LOC108351454uncharacterized LOC10835145474941918049434582Rat
1585306Arf1-ps4ADP-ribosylation factor 1, pseudogene 474972842149728965Rat
728895Trhdethyrotropin-releasing hormone degrading enzyme74994327150350613Rat
41180745LOC120093589uncharacterized LOC12009358975035015950370342Rat
41120670Trnat-agu25transfer RNA threonine (anticodon AGU) 2575036331750363395Rat
7514887LOC102549403uncharacterized LOC10254940375040092250423295Rat
41208259LOC120093590uncharacterized LOC12009359075043309750440570Rat
1595789Btf3-ps10basic transcription factor 3, pseudogene 1075054446450546990Rat
631332Tph2tryptophan hydroxylase 275068569450789424Rat
9406127LOC103692856nuclear cap-binding protein subunit 2 pseudogene75073889650747463Rat
1307920Tbc1d15TBC1 domain family, member 1575080455350860272Rat
1303150Rab21RAB21, member RAS oncogene family75090405050928890Rat
735209Tmem19transmembrane protein 1975095888450985601Rat
1593643Thap2THAP domain containing 275099291251007582Rat
1306287Zfc3h1zinc finger, C3H1-type containing75100825151064666Rat
41089710LOC120093959small nucleolar RNA SNORA4475101910851019230Rat
11410267Hnrnpa1-ps42heterogeneous nuclear ribonucleoprotein A1, pseudogene 4275104580151047650Rat
41346314LOC120093850MICOS complex subunit Mic10-like75107619551079347Rat
1307733Lgr5leucine rich repeat containing G protein coupled receptor 575108705951221882Rat
41214652Trnap-agg57transfer RNA proline (anticodon AGG) 5775110298851103061Rat
41084931LOC12009359139S ribosomal protein L50, mitochondrial-like75119307151213603Rat
621783Tspan8tetraspanin 875144494651479360Rat
41113964LOC120093938U7 small nuclear RNA75147428051474337Rat
7677619LOC102551386uncharacterized LOC10255138675149007851494499Rat
7638646LOC102551482uncharacterized LOC10255148275150810351519060Rat
41120201LOC120093592uncharacterized LOC12009359275152912251541332Rat
620780Ptprrprotein tyrosine phosphatase, receptor type, R75166259551929605Rat
1596425Taf7l-ps1TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 175176325951764401Rat
41355956LOC120093594uncharacterized LOC12009359475186252251881220Rat
41067918LOC120093595uncharacterized LOC12009359575189986351919776Rat
1305922Ptprbprotein tyrosine phosphatase, receptor type, B75195337552034751Rat
620728Kcnmb4potassium calcium-activated channel subfamily M regulatory beta subunit 475206614552119098Rat
1311672Cnot2CCR4-NOT transcription complex, subunit 275213044552222338Rat
2318367Pdia4-ps1protein disulfide isomerase family A, member 4, pseudogene 175224120052242264Rat
40972102LOC120093596uncharacterized LOC12009359675231948552323305Rat
1564883Rpl12a-ps1ribosomal protein L12, pseudogene 175236672652367448Rat
1562127Myrflmyelin regulatory factor-like75240332452519907Rat
1582946H3f3a-ps5H3.3 histone A, pseudogene 575252344852526265Rat
620650Rab3ipRAB3A interacting protein75253146152575295Rat
1305439Best3bestrophin 375258682452656776Rat
41120395LOC120093598uncharacterized LOC12009359875263629252640179Rat
1597472Rtcb-ps1RNA 2',3'-cyclic phosphate and 5'-OH ligase, pseudogene 175266985552671671Rat
41354498LOC120093599uncharacterized LOC12009359975267695752685404Rat
1307358Lrrc10leucine-rich repeat-containing 1075268697252688369Rat
1359143Cct2chaperonin containing TCP1 subunit 275269272552705478Rat
1308201Frs2fibroblast growth factor receptor substrate 275271125552792738Rat
41286435LOC120093600uncharacterized LOC12009360075279287152805208Rat
1597418Mrpl47-ps1mitochondrial ribosomal protein L47, pseudogene 175284067952841539Rat
1305741Yeats4YEATS domain containing 475285831352865454Rat
1306474RGD1306474similar to RIKEN cDNA 9530003J2375287584252880716Rat
1593616Lyc2lysozyme C type 275288710452894447Rat
3026Lyz2lysozyme 275290681052912154Rat
41016237LOC120093975small nucleolar RNA SNORA4875293013352930274Rat
1304640Cpsf6cleavage and polyadenylation specific factor 675295658953001783Rat
41127999LOC120093601uncharacterized LOC12009360175303123153044412Rat
41061317LOC120093899U6 spliceosomal RNA75312126853121371Rat
41163580LOC120093602uncharacterized LOC12009360275315392053159148Rat
7710554LOC102550217uncharacterized LOC10255021775316179253172907Rat
1310532Cpmcarboxypeptidase M75322564753286220Rat
41397689LOC120093603uncharacterized LOC12009360375322943553235643Rat
1305332Mdm2MDM2 proto-oncogene75329066053315205Rat
11428166LOC108351461uncharacterized LOC10835146175333234453341706Rat
1564876Slc35e3solute carrier family 35, member E375333709153350152Rat
621160Nup107nucleoporin 10775335374053398345Rat
620577Rap1bRAP1B, member of RAS oncogene family75342303953456349Rat
7733495Ndufa13-ps3NADH:ubiquinone oxidoreductase subunit A13, pseudogene 375344091753441370Rat
41116110Sfr1-ps1SWI5-dependent homologous recombination repair protein 1, pseudogene 175345838153461341Rat
41166350LOC120093606uncharacterized LOC12009360675346869753474503Rat
41103456LOC120093607uncharacterized LOC12009360775349040553495755Rat
7725676LOC102550659uncharacterized LOC10255065975351829153525492Rat
41135449LOC120093865basic proline-rich protein-like75354472253546293Rat
1306282Tmem186l1transmembrane protein 186l175355337853570587Rat
11389551LOC108351462uncharacterized LOC10835146275361951753629569Rat
11429701LOC108351463uncharacterized LOC10835146375367989253695346Rat
7718419LOC102551023uncharacterized LOC10255102375371786953729789Rat
1561092Mdm1Mdm1 nuclear protein75372960353766034Rat
1561292Il22interleukin 2275380120653805673Rat
9117410LOC103692876small ubiquitin-related modifier 2 pseudogene75387473853875151Rat
2866Ifnginterferon gamma75390333953907375Rat
41268730LOC120093851uncharacterized LOC12009385175420826754212875Rat
1312039Dyrk2dual specificity tyrosine phosphorylation regulated kinase 275434872454381363Rat
620479Cand1cullin-associated and neddylation-dissociated 175468111454719002Rat
1594497Rps12-ps4ribosomal protein S12, pseudogene75482751854827910Rat
2324060Uqcr11l1ubiquinol-cytochrome c reductase, complex III subunit XI like 175487514454875314Rat
41394217LOC120093612uncharacterized LOC12009361275488826954901551Rat
621667Grip1glutamate receptor interacting protein 175493485655592274Rat
41052312LOC120093802uncharacterized LOC12009380275535615855359497Rat
1560103HelbDNA helicase B75558851055615979Rat
1308846Irak3interleukin-1 receptor-associated kinase 375565394955714371Rat
735173Tmbim4transmembrane BAX inhibitor motif containing 475571869055733277Rat
1308261LlphLLP homolog, long-term synaptic facilitation factor75573531755740341Rat
620617Hmga2high mobility group AT-hook 275587714555998813Rat
41181996LOC120093613uncharacterized LOC12009361375591315555941962Rat
7677968LOC102549309uncharacterized LOC10254930975596419955977306Rat
41260607LOC120093614uncharacterized LOC12009361475597827655988331Rat
7678454LOC102547249uncharacterized LOC10254724975599824456005560Rat
11502995LOC108351467uncharacterized LOC10835146775608042056091186Rat
41374847LOC120093989small nucleolar RNA SNORA1775611925456119374Rat
7542471LOC102547506uncharacterized LOC10254750675612579456140736Rat
41319368LOC120093615uncharacterized LOC12009361575617003956172387Rat
41150806LOC120093616uncharacterized LOC12009361675617856356194792Rat
1596851Msrb3methionine sulfoxide reductase B375626098556426004Rat
1562607Styx-ps1serine/threonine/tyrosine interacting protein, pseudogene 175636338956364593Rat
1596822Lemd3LEM domain containing 375641505356499047Rat
41235016LOC120093617uncharacterized LOC12009361775651237956527620Rat
619774Wif1Wnt inhibitory factor 175654806056618364Rat
1561871Rps10-ps22ribosomal protein S10, pseudogene 2275677264656773237Rat
1305255Tbc1d30TBC1 domain family, member 3075677957056869092Rat
40974068LOC120093619uncharacterized LOC12009361975686911656871824Rat
1305877Gnsglucosamine (N-acetyl)-6-sulfatase75688914856923173Rat
1311450Rassf3Ras association domain family member 375693588857000554Rat
1588588Tbk1TANK-binding kinase 175707783057110868Rat
1305562Xpotexportin for tRNA75711153657152013Rat
2322266Ghitm-ps2growth hormone inducible transmembrane protein, pseudogene 275715622057157537Rat
1561648C7h12orf56similar to human chromosome 12 open reading frame 5675717040657220930Rat
1565498Kics2KICSTOR subunit 275728421357299070Rat
1566260Srgap1SLIT-ROBO Rho GTPase activating protein 175732953257594681Rat
40973776LOC120093620uncharacterized LOC12009362075733351357348361Rat
40943516LOC120093867sentrin-specific protease 2-like75760698957608641Rat
41349511LOC120093868sentrin-specific protease 2-like75767292357674377Rat
41179485LOC120093869sentrin-specific protease 2-like75770148357703091Rat
41225140LOC120093621sentrin-specific protease 2-like75774299757743814Rat
7548711Tmed2-ps1transmembrane p24 trafficking protein 2, pseudogene 175776767257769695Rat
1309356Rxylt1ribitol xylosyltransferase 175777084157782695Rat
1594496Vps54-ps1vacuolar protein sorting 54 homolog (S. cerevisiae), pseudogene 175783223557834588Rat
2185Avpr1aarginine vasopressin receptor 1A75811430658118230Rat
1309528Ppm1hprotein phosphatase, Mg2+/Mn2+ dependent, 1H75833866158599547Rat
2325604Mirlet7imicroRNA let-7i75864248558642569Rat
1308808Mon2MON2 homolog, regulator of endosome-to-Golgi trafficking75864937858728102Rat
11466148Snurfl1SNRPN upstream open reading frame like 175871471358716587Rat
628795Usp15ubiquitin specific peptidase 1575875671458848778Rat
9685075Snora19small nucleolar RNA, H/ACA box 1975878050358780571Rat
1589429Tafa2TAFA chemokine like family member 275894259859418640Rat
40952871LOC120093870basic proline-rich protein-like75944207559443292Rat
41098039LOC120093624uncharacterized LOC12009362475952784359540971Rat
41286787Crb1-ps3crumbs cell polarity complex component 1, pseudogene 375958331659598561Rat
41375035LOC120093987small nucleolar RNA SNORA1775967884959678980Rat
40939206Ftl1-ps8ferritin light chain 1, pseudogene 876082544560837640Rat
7695057LOC102552186uncharacterized LOC10255218676097594361088913Rat
3691Slc16a7solute carrier family 16 member 776104366761211547Rat
7654942LOC102552637uncharacterized LOC10255263776144449561496656Rat
7628604LOC102552423uncharacterized LOC10255242376149810261533554Rat
1561255Lrig3leucine-rich repeats and immunoglobulin-like domains 376181631361866275Rat
40991943LOC120093626uncharacterized LOC12009362676193670861940112Rat
1559995Dppa5l1developmental pluripotency associated 5 like 176252504462526042Rat
41034435Trnat-agu22transfer RNA threonine (anticodon AGU) 2276256550262565574Rat
41075389LOC120093627uncharacterized LOC12009362776262278762636248Rat
11399049LOC108351471uncharacterized LOC10835147176268101762702138Rat
40988719LOC120093981small nucleolar RNA SNORA1776268242462682554Rat
1597486Park7-ps1Parkinsonism associated deglycase, pseudogene 176270611562706995Rat
7525893LOC102557532uncharacterized LOC10255753276270896262710729Rat
1588587Atp23ATP23 metallopeptidase and ATP synthase assembly factor homolog76271475262729893Rat
41359680LOC120093628uncharacterized LOC12009362876275332662760239Rat
11399716LOC108351472uncharacterized LOC10835147276280038462804985Rat
2319209Ctdsp2CTD small phosphatase 276280539862825306Rat
620301Aviladvillin76282545962844103Rat
1593058TsfmTs translation elongation factor, mitochondrial76282899762864784Rat
1590711Eef1akmt3EEF1A lysine methyltransferase 376285330462864558Rat
1593036Mettl1methyltransferase 1, tRNA methylguanosine76286486062869202Rat
69192Cyp27b1cytochrome P450, family 27, subfamily b, polypeptide 176286934062876242Rat
1590688Marchf9membrane associated ring-CH-type finger 976287901762882495Rat
621120Cdk4cyclin-dependent kinase 476288612462889562Rat
1309876Tspan31tetraspanin 3176288955262892428Rat
628844Agap2ArfGAP with GTPase domain, ankyrin repeat and PH domain 276289728262914295Rat
1359574Os9OS9, endoplasmic reticulum lectin76291549862957591Rat
2318153Coq4-ps1coenzyme Q4, pseudogene 176295901462959701Rat
1565117Rps26l1ribosomal protein S26 like 176298168762982757Rat
620490B4galnt1beta-1,4-N-acetyl-galactosaminyl transferase 176298842962996190Rat
1564851Slc26a10solute carrier family 26, member 1076299516563005099Rat
735210Arhgef25Rho guanine nucleotide exchange factor 2576300593863013325Rat
1566181Dtx3deltex E3 ubiquitin ligase 376301376963018431Rat
621711Pip4k2cphosphatidylinositol-5-phosphate 4-kinase type 2 gamma76302000463035086Rat
1303035Kif5akinesin family member 5A76305189463089024Rat
1303182Dctn2dynactin subunit 276309206163107560Rat
1311050Mbd6methyl-CpG binding domain protein 676310756263115841Rat
62391Ddit3DNA-damage inducible transcript 376311564563121203Rat
1305321Mars1methionyl-tRNA synthetase 176312114263138550Rat
11465430Gapdh-ps23Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 2376313856463142507Rat
1305342Arhgap9Rho GTPase activating protein 976314857363157025Rat
621673Gli1GLI family zinc finger 176315692663169579Rat
621196Inhbeinhibin subunit beta E76317622163179209Rat
621194Inhbcinhibin subunit beta C76318414163197630Rat
41303428LOC120093804uncharacterized LOC12009380476319268763199370Rat
1310066R3hdm2R3H domain containing 276321251963340574Rat
7520545Eef1a1-ps12eukaryotic translation elongation factor 1 alpha 1, pseudogene 1276322731663228116Rat
41067915LOC120093917U6 spliceosomal RNA76323651363236622Rat
1308964Stac3SH3 and cysteine rich domain 376334307863350590Rat
2324558Ndufa4l2NDUFA4, mitochondrial complex associated like 276335102163359010Rat
1308582Shmt2serine hydroxymethyltransferase 276335896163364293Rat
628723Nxph4neurexophilin 476336775863376579Rat
1307535Lrp1LDL receptor related protein 176338032563461029Rat
41348715LOC120093805uncharacterized LOC12009380576344527163453892Rat
1309063Stat6signal transducer and activator of transcription 676348022963497551Rat
1311712Nab2Ngfi-A binding protein 276349758963504105Rat
1587179Nemp1nuclear envelope integral membrane protein 176351402563538791Rat
3135Myo1amyosin IA76354298863557944Rat
3809Tac3tachykinin precursor 376356255263569170Rat
1306532Zbtb39zinc finger and BTB domain containing 3976357699863584549Rat
61903Gpr182G protein-coupled receptor 18276358599763589088Rat
41090800LOC120093075retinol dehydrogenase 16-like76360472863613424Rat
735050Rdh16retinol dehydrogenase 1676361671163625053Rat
41109545Rdh16-ps1retinol dehydrogenase 16, pseudogene 176362868663638448Rat
1561812Rdh9retinol dehydrogenase 976364230563645149Rat
631370Rdh7retinol dehydrogenase 776367601663689375Rat
628716Sdr9c7short chain dehydrogenase/reductase family 9C, member 776370378863720325Rat
1311971Uqcrbubiquinol-cytochrome c reductase binding protein76381478463820150Rat
7570063LOC102549197uncharacterized LOC10254919776382025363826069Rat
735158Mterf3mitochondrial transcription termination factor 376382641863844747Rat
40928360LOC1200938965S ribosomal RNA76384051063840625Rat
1308949Ptdss1phosphatidylserine synthase 176384501763906791Rat
1583275Esco2-ps1establishment of cohesion 1 homolog 2 (S. cerevisiae), pseudogene 176394820763951641Rat
1583261Limk2-ps1LIM domain kinase 2, pseudogene 176404610364047200Rat
3649Sdc2syndecan 276412718564239885Rat
628610Cpqcarboxypeptidase Q76426402564830867Rat
9336170LOC103692875translationally-controlled tumor protein pseudogene76436642264373306Rat
41192745LOC120094055U6 spliceosomal RNA76444494264445048Rat
1311262Tspyl5TSPY-like 576488150464885512Rat
1583210Spata1-ps1spermatogenesis associated 1, pseudogene 176498533164989584Rat
1597752Tpt1-ps9tumor protein, translationally-controlled 1 pseudogene 976512195965122559Rat
1562404Rps18l3ribosomal protein S18 like 376514312765143670Rat
41182883LOC120093916U6 spliceosomal RNA76517002665170131Rat
1591678Rps17-ps10ribosomal protein S17, pseudogene 1076523948265239890Rat
1591667Gltp-ps1glycolipid transfer protein, pseudogene 176524160465244954Rat
620992Mtdhmetadherin76530646465365647Rat
41364015LOC120093852uncharacterized LOC12009385276542170165423066Rat
1311853Laptm4blysosomal protein transmembrane 4 beta76543452565477386Rat
1305353Matn2matrilin 276549499665644613Rat
41226631LOC120093957small nucleolar RNA SNORA2876564737865647501Rat
621201Rpl30ribosomal protein L3076564826665651401Rat
41001841LOC120093944small nucleolar RNA SNORA7276564875865648889Rat
1590540Erich5glutamate-rich 576565582965682221Rat
70940Ridareactive intermediate imine deaminase A homolog76569142965705257Rat
1308609Pop1POP1 homolog, ribonuclease P/MRP subunit76570534865733143Rat
40964218LOC120093927U6 spliceosomal RNA76573366365733772Rat
1564315Nipal2NIPA-like domain containing 276577447765884807Rat
41236297LOC120093631uncharacterized LOC12009363176578842665790438Rat
41171344LOC120093976small nucleolar RNA SNORA4876588135665881494Rat
7673256LOC102553465uncharacterized LOC10255346576600282266005251Rat
621525Kcns2potassium voltage-gated channel, modifier subfamily S, member 276602235266028422Rat
68412Stk3serine/threonine kinase 376605320966323292Rat
1305812Osr2odd-skipped related transciption factor 276648784166495003Rat
2320291Uba52-ps2ubiquitin A-52 residue ribosomal protein fusion product 1, pseudogene 276654679966550930Rat
1311183Vps13bvacuolar protein sorting 13 homolog B76655786267128429Rat
9428725LOC103692884pre-mRNA-splicing factor SPF27 pseudogene76662017466628176Rat
1585800Atmin-ps2ATM interactor, pseudogene 276676228366767117Rat
2325477Mir875microRNA 87576686195566862027Rat
620616Cox6ccytochrome c oxidase subunit 6C76712926567142001Rat
1562981Cwc22-ps1CWC22 spliceosome associated protein homolog, pseudogene 176715283467154825Rat
1565056Rps24-ps17ribosomal protein S24, pseudogene 1776716762267168537Rat
1565493Rgs22regulator of G-protein signaling 2276718853167308805Rat
1310225Fbxo43F-box protein 4376733316167346751Rat
2319895Polr2kRNA polymerase II, I and III subunit K76734711867359466Rat
1310702Spag1sperm associated antigen 176736147467421369Rat
41261583LOC120094040U4 spliceosomal RNA76741311867413276Rat
1307807Rnf19aring finger protein 19A, RBR E3 ubiquitin protein ligase76742583367465214Rat
7499219Rnf19al1ring finger protein 19A, RBR E3 ubiquitin protein ligase like 176746314367474348Rat
41311683Ldha-ps28lactate dehydrogenase A, pseudogene 2876747783267482843Rat
7630248LOC102554030uncharacterized LOC10255403076749537167497855Rat
1309382Ankrd46ankyrin repeat domain 4676764720267668180Rat
1309483Snx31sorting nexin 3176767651467776925Rat
619838Pabpc1poly(A) binding protein, cytoplasmic 176777743867789731Rat
3980Ywhaztyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta76794135367963651Rat
6497839LOC100910524uncharacterized LOC10091052476811051368115078Rat
1563959Zfp706zinc finger protein 70676816749668174121Rat
40982949Ftl1-ps7ferritin light chain 1, pseudogene 776830712868307785Rat
1561191Grhl2grainyhead-like transcription factor 276840028768530269Rat
1560287Ncaldneurocalcin delta76853267168964740Rat
40939488Nacc1-ps1nucleus accumbens associated 1, pseudogene 176858832768589999Rat
41101397LOC12009387660S ribosomal protein L29-like76865036068650662Rat
40991499LOC120093633uncharacterized LOC12009363376891795168929768Rat
41182468LOC120093634uncharacterized LOC12009363476900814269032204Rat
1306045Rrm2bribonucleotide reductase regulatory TP53 inducible subunit M2B76907702469108742Rat
621236Ubr5ubiquitin protein ligase E3 component n-recognin 576911521669224843Rat
1589002Papolb-ps1poly(A) polymerase beta, pseudogene 176927543269276655Rat
41391265LOC120093637uncharacterized LOC12009363776928419369332561Rat
11511017Rps29-ps17ribosomal protein S29, pseudogene 1776929476269295069Rat
9399550LOC103692890uncharacterized LOC10369289076936902169377312Rat
3228Odf1outer dense fiber of sperm tails 176937742769389662Rat
7607416LOC102550353uncharacterized LOC10255035376941872069426671Rat
621652Klf10KLF transcription factor 1076946765869473726Rat
41034532LOC120093639uncharacterized LOC12009363976957421069584354Rat
2318945Rnf149-ps1ring finger protein 149, pseudogene 176961601469619900Rat
61934Azin1antizyme inhibitor 176965477369681578Rat
41029905LOC120093640uncharacterized LOC12009364076968646069696731Rat
41148025LOC120093641uncharacterized LOC12009364176971163269717802Rat
7709136LOC102550582uncharacterized LOC10255058276977538169783840Rat
1311082Atp6v1c1ATPase H+ transporting V1 subunit C176983446469872278Rat
628703BaalcBAALC binder of MAP3K1 and KLF476991899869992289Rat
628816Fzd6frizzled class receptor 677005501270086781Rat
41061388LOC120094004small nucleolar RNA SNORA1777008958370089747Rat
628801Cthrc1collagen triple helix repeat containing 177012247470132756Rat
1565789Slc25a32solute carrier family 25 member 3277014295870160726Rat
1308458Dcaf13DDB1 and CUL4 associated factor 1377016098370196142Rat
41183437Gapdh-ps35Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 3577021857670220530Rat
620001Rims2regulating synaptic membrane exocytosis 277024810470759134Rat
9426508LOC103692901non-histone chromosomal protein HMG-17 pseudogene77046494570465342Rat
41031770LOC120093966small nucleolar RNA SNORA4877077971470779856Rat
1310435Dcstampdendrocyte expressed seven transmembrane protein77080745570822067Rat
68376Dpysdihydropyrimidinase77082264870929255Rat
1304943Lrp12LDL receptor related protein 1277094106871012409Rat
41122073LOC120093642uncharacterized LOC12009364277103645371041241Rat
1565735Gapdh-ps14Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 1477107256671073546Rat
41255602LOC120094033U2 spliceosomal RNA77111313671113342Rat
2318573Zcchc10-ps1zinc finger CCHC-type containing 10, pseudogene 177127388271276787Rat
9196150LOC103692893uncharacterized LOC10369289377135055471411463Rat
11463877LOC108351485uncharacterized LOC10835148577166616071679410Rat
1306021Zfpm2zinc finger protein, multitype 277167865872116209Rat
41126079LOC120093643uncharacterized LOC12009364377175546871761836Rat
41188976LOC120093644uncharacterized LOC12009364477208651072087989Rat
41120258LOC120093645uncharacterized LOC12009364577220278972209408Rat
7655393LOC102556196uncharacterized LOC10255619677236933972427830Rat
621857Oxr1oxidation resistance 177252875072965666Rat
41018571Rpl31-ps4ribosomal protein L31, pseudogene 477263215572632554Rat
41181863LOC120094047U6 spliceosomal RNA77266649772666603Rat
40939062LOC120093810uncharacterized LOC12009381077287488672890974Rat
708493Abraactin-binding Rho activating protein77297018772974255Rat
41313047LOC120094010small nucleolar RNA SNORA1777304414473044260Rat
41139740Bnip3-ps7BCL2 interacting protein 3, pseudogene 777304476673047572Rat
40947210LOC120094048U6 spliceosomal RNA77323317873233284Rat
41211778LOC120094034U2 spliceosomal RNA77340216173402292Rat
9388790LOC103692897anaphase-promoting complex subunit CDC26 pseudogene77346239673462806Rat
1594493Krt18-ps3keratin 18, pseudogene 377346695373469075Rat
628896Angpt1angiopoietin 177352834573783953Rat
7673863LOC102547184uncharacterized LOC10254718477378360673793293Rat
7688552LOC102547251uncharacterized LOC10254725177379868273801121Rat
41157951LOC120093933U7 small nuclear RNA77403049474030556Rat
1562331Rspo2R-spondin 277409637874239398Rat
1311521Eif3eeukaryotic translation initiation factor 3 subunit E77433984874372483Rat
1594492Morf4l1-ps6mortality factor 4 like 1, pseudogene 677452741274528663Rat
1310430Emc2ER membrane protein complex subunit 277458719674624163Rat
41319180LOC120094042U4 spliceosomal RNA77474469274744827Rat
1566279Tmem74transmembrane protein 7477492929074937929Rat
41130380LOC120094049U6 spliceosomal RNA77497115674971262Rat
9273439Eif3e-ps1eukaryotic translation initiation factor 3 subunit E, pseudogene 177525736675265601Rat
3904Trhrthyrotropin releasing hormone receptor77534867275393310Rat
41084824LOC120094006small nucleolar RNA SNORA1777551134175511466Rat
1310624Nudcd1NudC domain containing 177555065075595976Rat
1596439Eny2ENY2, transcription and export complex 2 subunit77558121575605903Rat
1310406Pkhd1l1PKHD1 like 177562038475795335Rat
1307293Ebag9estrogen receptor binding site associated antigen 977581095075828902Rat
1564335Sybusyntabulin77584700075948919Rat
1309489Smg5l1Smg5 nonsense mediated mRNA decay factor like 177591752776051832Rat
41079558LOC120094031U2 spliceosomal RNA77606916476069307Rat
41104726LOC120093973small nucleolar RNA SNORA4877610616776106298Rat
41357363LOC120093648uncharacterized LOC12009364877613253876167127Rat
621264Kcnv1potassium voltage-gated channel modifier subfamily V member 177626069576269170Rat
11459737LOC108351622uncharacterized LOC10835162277682649976831983Rat
41402332LOC120093856uncharacterized LOC12009385677690252176906097Rat
1582945Elavl1-ps1ELAV like RNA binding protein 1, pseudogene 177790689177908547Rat
6500921Rpl6-ps4ribosomal protein L6, pseudogene 477809812878101722Rat
7680464LOC102551754uncharacterized LOC10255175477865337478658701Rat
1598176Eif4b-ps2eukaryotic translation initiation factor 4B, pseudogene 277872178978723699Rat
1594530Csmd3CUB and Sushi multiple domains 377874732280066466Rat
9394853Hdac1-ps2histone deacetylase 1, pseudogene 277893331978937424Rat
40946632LOC120093991small nucleolar RNA SNORA1777899559678995719Rat
41164982LOC120093811uncharacterized LOC12009381177903590179060192Rat
41372429LOC120093812uncharacterized LOC12009381277936796079387528Rat
9226732Tmsb4xl1(thymosin beta 4, X-linked like 177978165479781818Rat
41321218LOC120094013small nucleolar RNA SNORA2678013089380131008Rat
2324771Snw1-ps2SNW domain containing 1, pseudogene 278014008780332987Rat
41356974LOC120093943U7 small nuclear RNA78018072880180791Rat
1332703Or8i9-ps1olfactory receptor family 8 subfamily I member 9, pseudogene 178051937080519736Rat
1311883Trps1transcriptional repressor GATA binding 178191666882142733Rat
41396341LOC120093649uncharacterized LOC12009364978202511382045293Rat
7567645LOC102548590uncharacterized LOC10254859078223776582247335Rat
7548946LOC102548754uncharacterized LOC10254875478257677982604720Rat
11477543LOC10835158260S ribosomal protein L15 pseudogene78281934482828097Rat
735178Eif3heukaryotic translation initiation factor 3, subunit H78309103783174451Rat
1307179Utp23UTP23, small subunit processome component78318518783196652Rat
1594491Rps16-ps9ribosomal protein S16, pseudogene 978321863783219115Rat
1594529Rad21RAD21 cohesin complex component78328786783314810Rat
41137420LOC120093650uncharacterized LOC12009365078333277383340980Rat
631378Aardalanine and arginine rich domain containing protein78336447883369319Rat
1594490Rps3a-ps6ribosomal protein S3a, pseudogene 678341236983413165Rat
2323224Hmgn2l3high mobility group nucleosomal binding domain 2 like 378352004683520312Rat
1308282Slc30a8solute carrier family 30 member 878359199383627786Rat
41135575LOC120093651uncharacterized LOC12009365178372558483732362Rat
41223521LOC120094032U2 spliceosomal RNA78378336083783437Rat
41050819LOC120093918U6 spliceosomal RNA78379568283795784Rat
41210447LOC120093982small nucleolar RNA SNORA1778379870083798831Rat
1594788Eef1g-ps7eukaryotic translation elongation factor 1 gamma, pseudogene 778393317183934513Rat
1309369Med30mediator complex subunit 3078400473584026474Rat
1594489Ppp2r1b-ps1protein phosphatase 2 scaffold subunit A beta, pseudogene 178425782784259665Rat
1587375Ext1exostosin glycosyltransferase 178437576984654625Rat
41190574Coa6-ps2cytochrome c oxidase assembly factor 6, pseudogene 278473402184744492Rat
41348804Gapdh-ps31Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 3178474473684746963Rat
1561402Samd12sterile alpha motif domain containing 1278476885085064057Rat
41031164LOC120093656uncharacterized LOC12009365678483629384870077Rat
40943775LOC120093986small nucleolar RNA SNORA1778491957684919697Rat
40986003LOC120093655uncharacterized LOC12009365578492961684938592Rat
41335646LOC12009365440S ribosomal protein S25-like78515594385156357Rat
1594488Psmb7-ps2proteasome 20S subunit beta 7, pseudogene 278528695685287689Rat
41171629LOC120093858uncharacterized LOC12009385878538125985394885Rat
619802Tnfrsf11bTNF receptor superfamily member 11B78556652085594526Rat
1307149Colec10collectin subfamily member 1078574489585806368Rat
7507053Gapdh-ps72Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 7278581179285814750Rat
9109499LOC103692934ubiquitin-conjugating enzyme E2 C pseudogene78582632585826798Rat
735066Mal2mal, T-cell differentiation protein 278590045385933433Rat
621553Ccn3cellular communication network factor 378609400086101022Rat
1566354Gapdh-ps95Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 9578611280586113417Rat
40939717LOC120093970small nucleolar RNA SNORA4878612446586124606Rat
69298Enpp2ectonucleotide pyrophosphatase/phosphodiesterase 278620234586325050Rat
41167073LOC120093657uncharacterized LOC12009365778632514086332561Rat
621487Taf2TATA-box binding protein associated factor 278642261386479616Rat
1561749Dscc1DNA replication and sister chromatid cohesion 178648258886498212Rat
2321290H3f3cH3 histone, family 3C78650108586502124Rat
1561030DeptorDEP domain containing MTOR-interacting protein78651485986668817Rat
41091710LOC120093932U7 small nuclear RNA78667191886671981Rat
41285670LOC120093939U7 small nuclear RNA78667199086672051Rat
1565732Rpl31-ps5ribosomal protein L31, pseudogene 578668697286687528Rat
1305806Col14a1collagen type XIV alpha 1 chain78672209386937215Rat
9457468Eif1-ps1eukaryotic translation initiation factor 1, pseudogene 178673517886735670Rat
1359587Mrpl13mitochondrial ribosomal protein L1378695154186973147Rat
1565672MtbpMDM2 binding protein78697321587055775Rat
41119759LOC120093658uncharacterized LOC12009365878704169787043506Rat
1307728Sntb1syntrophin, beta 178706092687329315Rat
41102902Trnak-cuu17transfer RNA lysine (anticodon CUU) 1778734897787349051Rat
6487874Rpl13-ps5ribosomal protein L13, pseudogene 578755382387554447Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10221D7Arb1775811322458113450Ratregion
10880D7Mgh2212475288832652888450Ratregion
34172D7Mgh1221776775960667759823Ratregion
34499D7Mgh714276973622669736356Ratregion
34634D4Mgh538375811434658114729Ratregion
33648D7Mit514178022129980221436Ratregion
36099D7Rat2515775679321056793354Ratregion
36317D7Rat16617475922594759226115Ratregion
37236D7Rat5112674725178347251899Ratregion
37256D7Rat10614974391053643910683Ratregion
37258D7Rat10721474442107944421311Ratregion
35180D7Rat4317076173665261736830Ratregion
37144D7Rat7414077382920473829340Ratregion
37642D7Rat11222878519688685197132Ratregion
37808D7Rat8612278315339283153512Ratregion
37838D7Rat7513376376898163769114Ratregion
37838D7Rat7513376377335763773500Ratregion
34789D7Rat4613174875897948759110Ratregion
34999D7Rat4416276200445262004598Ratregion
35749D7Rat4517476390260863902784Ratregion
35787D7Rat4217478400154684001720Ratregion
35919D7Rat2323277015132670151553Ratregion
39614D7Rat16723775310609653106333Ratregion
39830D7Rat16324676503798665038228Ratregion
39884D7Rat16921174771946647719673Ratregion
39938D7Rat14111778359195383592070Ratregion
38198D7Rat6923076046045260460686Ratregion
38606D7Rat11023776908995769090184Ratregion
38754D7Rat5721775920106959201286Ratregion
40058D7Rat14615075361691753617069Ratregion
40068D7Rat16117578400599684006171Ratregion
40116D7Rat16229378255597082556263Ratregion
40164D7Rat16413476528724765287381Ratregion
38794D7Rat7323375361271453612950Ratregion
39012D7Rat9824674975349649753746Ratregion
39094D7Rat5824575826487858265113Ratregion
39480D7Rat16521776572863465728867Ratregion
42215D7Arb168774374701243747099Ratregion
42826D7Rat21014974643188446432023Ratregion
42828D7Rat20920375762948357629662Ratregion
42830D7Rat20724175664188756642142Ratregion
42831D7Rat22814975797580457975951Ratregion
42832D7Rat17711077464769674647800Ratregion
42833D7Rat20622977084011870840342Ratregion
42834D7Rat20414877278133272781484Ratregion
41186D7Rat13918078492790684928080Ratregion
42339D7Rat22024775853205558532298Ratregion
42340D7Rat23014676329436763294498Ratregion
40862D7Rat14511876129036361290481Ratregion
41078D7Rat14412676814380968143931Ratregion
41106D7Rat14714674659953146599681Ratregion
41558D7Rat14212577178896371789091Ratregion
44214D7Got7729476803272468033020Ratregion
44251D7Got15725174410810444108355Ratregion
44252D7Got3321474530844145308655Ratregion
44253D7Got8328574796220047962485Ratregion
44255D7Got3912874913859049138718Ratregion
44256D7Got919974887586048875959Ratregion
44257D7Got8017175003291450033085Ratregion
44258D7Got14816675141562751415793Ratregion
44259D7Got4016775410309154103255Ratregion
44262D7Got4426075852809758528354Ratregion
44265D7Got4126475485817054858434Ratregion
44266D7Got4924775476962754769874Ratregion
44267D7Got4814275814366558143807Ratregion
44268D7Got6819577348064173480838Ratregion
44269D7Got5413978004228280042419Ratregion
44270D7Got6619877056640670566604Ratregion
44271D6Got19022977027953470279763Ratregion
44272D7Got5815978337455083374709Ratregion
44273D7Got5913978394715283947291Ratregion
44274D7Got6124578528769785287942Ratregion
44275D7Got6022578591358585913810Ratregion
44275D7Got6022578591358585913810Ratregion
44278D7Got15021378696127186961484Ratregion
60575D7Got4717275677175456771926Ratregion
60577D7Got5029777742997177430267Ratregion
60578D7Got5114277767110877671250Ratregion
60579D7Got5218777247471072474897Ratregion
60582D7Got5617977460763574607814Ratregion
60584D7Got6224278641483086415072Ratregion
60571D7Got3519274552504745525239Ratregion
60574D7Got4318475665361656653800Ratregion
60819D7Wox319176400245764002648Ratregion
67815D7Uwm1114074659587446596030Ratregion
67821D7Uwm1216578111622981116402Ratregion
67824D7Uwm1314778519875985198911Ratregion
67826D7Uwm1412377591180475911927Ratregion
625818D7Got5720578095578480955989Ratregion
629585D7Got4514875661217156612319Ratregion
66379D7Uia539176137158761371978Ratregion
629616D7Hmgc316878556775485567922Ratregion
67753D7Uwm2033375863234358632680Ratregion
1631140D7Got21014476247463062474774Ratregion
1631211D7Got22416877603440076034565Ratregion
1631587D7Got23418677190696371907149Ratregion
1632072D7Wox3312674994751949947647Ratregion
1632222D7Got22317077696291576963083Ratregion
1632357D7Got22918376161027161610449Ratregion
1579067D10Chm25021875014650150146536Ratregion
1627964D7Got21428477602917576029461Ratregion
1628011D7Got20910776081152960811636Ratregion
1629518DXGot14229976573810665738175Ratregion
1629834D7Got23927176356929563569566Ratregion
1629994D7Got22019276406273664062926Ratregion
1630048D7M6Mit12322476548435465484578Ratregion
1639140D7Wox3923675291295652913192Ratregion
1641372D7Got2089776015611560156212Ratregion
1641727D7Got26125276809324968093496Ratregion
1641727D7Got26125276809330568093496Ratregion
1639772D7Got25513776900984969009986Ratregion
1632848D7Got23715675168505351685209Ratregion
1632864D7Got21125976648517466485433Ratregion
1632961D7Got23018374654194146542119Ratregion
1633105D7Got22620475762954557629747Ratregion
1633564D7Got20723775518545355185690Ratregion
1640041D7Got25823376695141366951646Ratregion
1640347D7Wox3431777325270273253019Ratregion
1640598D7Got25225676090697860907234Ratregion
1635099D14Got14710076409441164094511Ratregion
1635099D14Got14710076409441164094511Ratregion
1635752D7Got20617575539314155393316Ratregion
1636849D7Got22819474706939147069582Ratregion
1636907D7Got23122875479095254791180Ratregion
1637384D7Wox3675811321258113629Ratregion
1637797D7Got23223176257861262578840Ratregion
1638267D7Got24210974657039846570507Ratregion
1638459D7Got26014776991355069913699Ratregion
1633940D7Got21315476891729568917449Ratregion
1633988D7Got24615776775960767759764Ratregion
1634664D7Got22222077117423871174457Ratregion
1634664D7Got22222077117423871174473Ratregion
2315416D16Nkg10415174454157144541728Ratregion
7206392UniSTS:23434926976861256268612831Ratregion
7205768UniSTS:22471215578730177787301932Ratregion
7205956Dyrk249775435474354355240Ratregion
7205998Avil11376282963662831041Ratregion
7206048Tmed239275776912957769525Ratregion
7206060Tmed237875776918257769564Ratregion
7191287Myf591374280466842805581Ratregion
7193117Myf6074281358642814006Ratregion
7192370Nov10478609443686095889Ratregion
7206062Azin137076965806369659554Ratregion
7206422stm546acag-7A075586498355866413Ratregion
7206466Trps170078209987482100574Ratregion
5035759WI-1975125475269275052693004Ratregion
5036141D10Wsu93e25176310766163107912Ratregion
5038986RH12744719477082273870822932Ratregion
7206518UniSTS:54684293475108878451089718Ratregion
5036223RH12564827475121044851210722Ratregion
5036290Ext114378437676484376907Ratregion
5039172RH12755320876291735262917560Ratregion
5036470Ptprq63374284348242844115Ratregion
5036609AU04858517676172405261724228Ratregion
5036863AU04944616677550589275506062Ratregion
5037101A008W0510275729563457295736Ratregion
5037161RH7854916374381338243813545Ratregion
5035502AI22972016778336842583368592Ratregion
5035508EST4E911376914672069146833Ratregion
5035669D8S158023877075636470756602Ratregion
5031306PMC133987P134976336376763364116Ratregion
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5505239Shmt27076336127963361349Ratregion
5504550PMC303372P148577211540372115888Ratregion
5505294Lgr5131375108968251090995Ratregion
5505306Ppp2r1b39178425913984259515Ratregion
5505514DXS1232076070644760707416Ratregion
5506064UniSTS:49826441077790644777906856Ratregion
5506076UniSTS:49830023478393359083933824Ratregion
5506145Angpt117977378360973783788Ratregion
5506995fi15f09.x132376969907769699646Ratregion
5507027fk81g07.x197474973636649736538Ratregion
5507091UniSTS:224451076349766363497833Ratregion
5500055UniSTS:23647313475571921355719347Ratregion
5500270D12S1376E9174513945545139546Ratregion
5500165D16Mit7544976700790767007946Ratregion
5500230AI84882913977094113870941277Ratregion
5503019B4galnt121776299009162990920Ratregion
5500575RH13603120775267111652671323Ratregion
5500767REN1333124778465398984654236Ratregion
5500837D3S416114174636606946366850Ratregion
5500763REN1332925578465443884654693Ratregion
5500765REN1332622878465508984655317Ratregion
5500523RH13587015076536410065364250Ratregion
5500731G1970110776965609769656204Ratregion
5503540ODF1__610353476938912369389657Ratregion
5503700MARC_36444-36445:1067884409:185875269638652697244Ratregion
5501147PMC150726P430476312076363121067Ratregion
5501400Myf6074281358342814392Ratregion
5501371STS-Z4144165978550317385503832Ratregion
5501436Snrpn35875871475758715094Ratregion
5501472D7S22468475331391853314002Ratregion
5501734MARC_10159-10160:996678914:110076564149265641903Ratregion
5501962MARC_21230-21231:1032890530:1074281355142813957Ratregion
55027409STS0113976816766068167799Ratregion
5502427RH12481212076536314365363263Ratregion
5502641RH12612320576816607868166283Ratregion
5502895Kif5a170076305662163058321Ratregion
Position Markers

Peak: (D7Rat164)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2765,287,247 - 65,287,381 (+)MAPPER
Rnor_6.0772,752,037 - 72,752,170NCBI
Rnor_5.0772,918,736 - 72,918,869UniSTS
RGSC_v3.4769,506,937 - 69,507,070UniSTS
RGSC_v3.4769,506,936 - 69,507,070RGD
RGSC_v3.1769,527,666 - 69,527,800RGD
Celera762,393,435 - 62,393,568UniSTS
FHH x ACI Map734.52UniSTS
FHH x ACI Map734.52RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1641908Teswt1Testicular weight QTL 13.28testis mass (VT:1000644)both testes wet weight (CMO:0000175)78022129994811326Rat
2303629Vencon3Ventilatory control QTL 37.25respiration trait (VT:0001943)respiration rate (CMO:0000289)74110969256793354Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)77084011872474897Rat
724537Niddm52Non-insulin dependent diabetes mellitus QTL 520.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)78022129993595843Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)77084011872474897Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)72940968353612950Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
61435Cia4Collagen induced arthritis QTL 45.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)75811322462004598Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Hc3

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general suggestively associates with higher calcium excretion than in the WKY progenitors 631855