Alcrsp9 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Alcrsp9 (Alcohol response QTL 9) Rattus norvegicus

Symbol: Alcrsp9
Name: Alcohol response QTL 9
RGD ID: 1641885
Previously known as: Blood ethanol concentration 1; BEC1
Trait: alcohol metabolism trait   (VT:0015089)    
Measurement Type: blood ethanol level   (CMO:0000535)    
LOD Score: Likelihood Ratio: 13.6
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2724,099,606 - 69,099,606RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0731,381,529 - 76,381,529RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0731,391,058 - 76,391,058RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4727,664,404 - 72,664,404RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.1727,685,176 - 72,685,176RGD
Cross Type: intercross
Strains Crossed: LAS1 HAS1 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
HAS1  (IEA)
LAS1  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Quantitative trait Loci mapping for ethanol sensitivity and neurotensin receptor density in an F2 intercross derived from inbred high and low alcohol sensitivity selectively bred rat lines. Radcliffe RA, etal., Alcohol Clin Exp Res 2004 Dec;28(12):1796-804.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1305665Scyl2SCY1 like pseudokinase 272406440424117338Rat
1304609Actr6actin related protein 672415025024171057Rat
1594520Bltp3bbridge-like lipid transfer protein family member 3B72418163524261720Rat
1565556Anks1bankyrin repeat and sterile alpha motif domain containing 1B72431333925479307Rat
41008610LOC120094026U2 spliceosomal RNA72460434224604529Rat
41038583LOC120093796uncharacterized LOC12009379672480240224830026Rat
11495246LOC108351597uncharacterized LOC10835159772490393824915896Rat
41277470LOC120093926U6 spliceosomal RNA72494002324940117Rat
41155466LOC120093797uncharacterized LOC12009379772499036524996489Rat
41319396LOC120093795uncharacterized LOC12009379572507314925103124Rat
41018033Snrpn-ps3small nuclear ribonucleoprotein polypeptide N, pseudogene 372525325625253962Rat
40972371Ndufa2-ps4NADH:ubiquinone oxidoreductase subunit A2, pseudogene 472539004525390816Rat
620575Apaf1apoptotic peptidase activating factor 172549414325579540Rat
1305457IkbipIKBKB interacting protein72557986525598548Rat
70986Slc25a3solute carrier family 25 member 372561193725619401Rat
40960245Snora53small nucleolar RNA, H/ACA box 5372561335725613602Rat
3875Tmpothymopoietin72564275225667756Rat
9421619LOC103692820cytochrome b-c1 complex subunit 7 pseudogene72566104525662232Rat
11464810Trnaw-cca1transfer RNA tryptophan (anticodon CCA) 172567834125678412Rat
11462537Trnad-guc1transfer RNA aspartic acid (anticodon GUC) 172567902625679097Rat
1589769Tpgs2-ps1tubulin polyglutamylase complex subunit 2, pseudogene 172573055625731426Rat
1589768Gapdh-ps98Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 9872589535225915853Rat
41248997LOC120093956small nucleolar RNA SNORA2472605931726059438Rat
1565429Rps19-ps6ribosomal protein S19, pseudogene 672639470826395173Rat
7515236LOC102548260uncharacterized LOC10254826072661092526704322Rat
2325347Mir135amicroRNA 135a72661199026612089Rat
41254183LOC120093847uncharacterized LOC12009384772693764326943644Rat
1307750Nedd1NEDD1 gamma-tubulin ring complex targeting factor72723305027274486Rat
41386114LOC120094015small nucleolar RNA SNORA7972723688927237031Rat
1565866Cfap54cilia and flagella associated protein 5472731649827601630Rat
41364186LOC120093552uncharacterized LOC12009355272734776827351084Rat
1565593Cdk17cyclin-dependent kinase 1772768389027765814Rat
1307764Elk3ETS transcription factor ELK372776858227831088Rat
7727462LOC102548950uncharacterized LOC10254895072783371927839466Rat
40991469LOC120093554uncharacterized LOC12009355472792595927936004Rat
41002557Psmb3-ps1proteasome 20S subunit beta 3, pseudogene 172795525027957768Rat
11452399Trnad-guc2transfer RNA aspartic acid (anticodon GUC) 272796938427969455Rat
1311333Lta4hleukotriene A4 hydrolase72796979628001600Rat
7620450LOC102553539uncharacterized LOC10255353972799774428006748Rat
68363Halhistidine ammonia lyase72800744928037701Rat
1308879Amdhd1amidohydrolase domain containing 172804392328059156Rat
1564046Ccdc38coiled-coil domain containing 3872805588328129938Rat
1588229Snrpfsmall nuclear ribonucleoprotein polypeptide F72813042728137129Rat
1565947Ntn4netrin 472818661128300390Rat
2324495Rps21-ps5ribosomal protein S21, pseudogene 572826513528265549Rat
9159198LOC103692824NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial pseudogene72835176828352101Rat
1308216Usp44ubiquitin specific peptidase 4472836416928412039Rat
70995Metap2methionyl aminopeptidase 272841242928440458Rat
1359117Veztvezatin, adherens junctions transmembrane protein72851221428597429Rat
2325619Mir331microRNA 33172852739028527485Rat
41302345LOC120093556uncharacterized LOC12009355672854394228546950Rat
1565609Fgd6FYVE, RhoGEF and PH domain containing 672859760928712908Rat
3200Nr2c1nuclear receptor subfamily 2, group C, member 172871534728768624Rat
1311462Ndufa12NADH:ubiquinone oxidoreductase subunit A1272877133028798316Rat
1307241Tmcc3transmembrane and coiled-coil domain family 372889397229171935Rat
7570684LOC102554269uncharacterized LOC10255426972901693629030555Rat
41240014LOC12009355760S ribosomal protein L31-like72917831129180418Rat
41265557LOC120093558uncharacterized LOC12009355872924232229247760Rat
6488367Atp5mf-ps3ATP synthase membrane subunit f, pseudogene 372925148529251828Rat
10395318Cep83oscentrosomal protein 83, opposite strand72926076729280248Rat
1359593Cep83centrosomal protein 8372928035829389574Rat
41092649LOC120093560uncharacterized LOC12009356072937862429382893Rat
1307420Plxnc1plexin C172939003829543985Rat
41072814LOC120093559uncharacterized LOC12009355972954374029548701Rat
11501359LOC108351432uncharacterized LOC10835143272959175729593257Rat
7507440Rpl36a-ps18ribosomal protein L36A, pseudogene 1872969502029709955Rat
9391515Rpl39-ps13ribosomal protein L39, pseudogene 1372983493629835288Rat
1311010CraddCASP2 and RIPK1 domain containing adaptor with death domain72994024029952907Rat
41309000Dnajc30-ps1DnaJ heat shock protein family (Hsp40) member C30, pseudogene 172996842929972525Rat
69273Socs2suppressor of cytokine signaling 273000636030045161Rat
1304915Mrpl42mitochondrial ribosomal protein L4273011797730141757Rat
7693286LOC102556774uncharacterized LOC10255677473014966130153451Rat
621096Ube2nubiquitin-conjugating enzyme E2N73015433030184373Rat
621355Nudt4nudix hydrolase 473018810030204615Rat
7588949LOC102546610uncharacterized LOC10254661073020661730209678Rat
1565358Ndufa13-ps1NADH:ubiquinone oxidoreductase subunit A13, pseudogene 173037015630370625Rat
7751615LOC102546992uncharacterized LOC10254699273042347630432798Rat
6488764LOC100912143uncharacterized LOC10091214373042696230453658Rat
1310167Eea1early endosome antigen 173055468630722186Rat
41286759LOC120093990small nucleolar RNA SNORA1773055782230557964Rat
7665469Rpl6-ps8ribosomal protein L6, pseudogene 873067408830677692Rat
7576392Plekhg7pleckstrin homology and RhoGEF domain containing G773072795230805866Rat
41097296Ewsr1-ps4EWS RNA-binding protein 473081892130820102Rat
11383424Rpl15-ps4ribosomal protein L15, pseudogene 473095126730951881Rat
41175614Gapdh-ps34Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 3473118736731188483Rat
41106785LOC120094036U2 spliceosomal RNA73119009831190164Rat
7552031LOC102550725uncharacterized LOC10255072573133887031341029Rat
2224Btg1BTG anti-proliferation factor 173134139131343649Rat
11386103LOC108351618glyceraldehyde-3-phosphate dehydrogenase pseudogene73139002831391014Rat
40933449U2l2U2 spliceosomal RNA like 273147611531476221Rat
41165622Taldo1-ps2transaldolase 1, pseudogene 273150690531508727Rat
41289757LOC120093564uncharacterized LOC12009356473163413431640133Rat
11409121LOC108351437glyceraldehyde-3-phosphate dehydrogenase pseudogene73164368331650688Rat
41049173U2l1U2 spliceosomal RNA like 173194920631949396Rat
2320737Cwc15-ps2CWC15 spliceosome-associated protein, pseudogene 273199612932000031Rat
11462120LOC10835161960S ribosomal protein L13 pseudogene73205808732058762Rat
41373641LOC120093849uncharacterized LOC12009384973211987632128347Rat
41119690LOC120093566uncharacterized LOC12009356673223801332280947Rat
61895Dcndecorin73228125232321291Rat
620984Lumlumican73235899032365794Rat
1305816Kerakeratocan73239738232404837Rat
1305904Epycepiphycan73243662032474326Rat
1560042Ccer1coiled-coil glutamate-rich protein 173248506332521296Rat
40976615LOC120093993small nucleolar RNA SNORA1773252924032529384Rat
40938680LOC120093567uncharacterized LOC12009356773254061432737507Rat
1597146Ppia-ps12peptidylprolyl isomerase A, pseudogene 1273355950233559989Rat
621303Atp2b1ATPase plasma membrane Ca2+ transporting 173373559533845226Rat
41197857Gng5-ps2G protein subunit gamma 5, pseudogene 273390583133906268Rat
2323942Poc1bPOC1 centriolar protein B73392411234025908Rat
1564589Galnt4polypeptide N-acetylgalactosaminyltransferase 473392522933927770Rat
70978Dusp6dual specificity phosphatase 673409284834097186Rat
41081941LOC120093569uncharacterized LOC12009356973410728734116573Rat
1595795Tuba1b-ps12tubulin, alpha 1B, pseudogene 1273417559134176932Rat
1595794Eef1a1-ps3eukaryotic translation elongation factor 1 alpha 1, pseudogene 373419847934205120Rat
41291036LOC120093570uncharacterized LOC12009357073430133934326597Rat
1565753Csl1citrate synthase like 173458393234704321Rat
41212204Cs-ps1citrate synthase, pseudogene 173459897834601654Rat
6498798LOC100910453voltage-dependent anion-selective channel protein 1-like73484100034841375Rat
3086KitlgKIT ligand73489607534977215Rat
41175762LOC120093572uncharacterized LOC12009357273498256934988018Rat
11378564LOC108351620glyceraldehyde-3-phosphate dehydrogenase pseudogene73503085535032582Rat
41395832LOC120093971small nucleolar RNA SNORA4873510229035102431Rat
1306351Tmtc3transmembrane O-mannosyltransferase targeting cadherins 373526488635310010Rat
1311640Cep290centrosomal protein 29073531007135399388Rat
41325648Trnap-ggg7transfer RNA proline (anticodon GGG) 773534918335349263Rat
1307947Rlig1RNA 5'-phosphate and 3'-OH ligase 173539687635408633Rat
1563125C7h12orf50similar to human chromosome 12 open reading frame 5073540614735443324Rat
2323562Rps13-ps9ribosomal protein S13, pseudogene 973548047435480916Rat
41251481LOC120093573uncharacterized LOC12009357373655304036571045Rat
1307871Mgat4cMGAT4 family, member C73670956437485810Rat
40962455Rsrc1-ps1arginine and serine rich coiled-coil 1, pseudogene 173706576737071635Rat
6498316LOC100910482uncharacterized LOC10091048273752081437542239Rat
621612Ntsneurotensin73756494437574350Rat
621329Rassf9Ras association domain family member 973759972037631553Rat
9445936LOC103690238uncharacterized LOC10369023873782986337834663Rat
41365425LOC120093575uncharacterized LOC12009357573811435138131730Rat
2273Alx1ALX homeobox 173815762638177220Rat
41273020LOC120093145leucine-rich repeat and IQ domain-containing protein 1-like73819159538317201Rat
41128408LOC120094005small nucleolar RNA SNORA1773828218338282302Rat
1564903Lrriq1leucine-rich repeats and IQ motif containing 173831725938409885Rat
628664Slc6a15solute carrier family 6 member 1573855305538607239Rat
41078854LOC120093967small nucleolar RNA SNORA4873856412838564271Rat
41254759LOC120093576uncharacterized LOC12009357673856646538568470Rat
41327720LOC120093901U6 spliceosomal RNA73865725238657356Rat
41028082LOC120093907U6 spliceosomal RNA73909235839092466Rat
41337737LOC120093577uncharacterized LOC12009357773951493539526972Rat
41032554Banf1-ps4BAF nuclear assembly factor 1, pseudogene 474027746640277911Rat
41082719LOC120094000small nucleolar RNA SNORA1774034457540344707Rat
1309848Tmtc2transmembrane O-mannosyltransferase targeting cadherins 274039237740806685Rat
40960293LOC120093898U6 spliceosomal RNA74056870340568801Rat
40957379LOC120093578uncharacterized LOC12009357874076494240789988Rat
1310270Mettl25methyltransferase like 2574106227641143056Rat
1311912Ccdc59coiled-coil domain containing 5974114276041149143Rat
1305021Ppfia2PTPRF interacting protein alpha 274176571642240104Rat
1307051Acss3acyl-CoA synthetase short-chain family member 374224126142450209Rat
9417884LOC103692846sulfotransferase 1C2 pseudogene74225480842256182Rat
40969194LOC120094001small nucleolar RNA SNORA1774245986042459990Rat
621256Lin7alin-7 homolog A, crumbs cell polarity complex component74258670442742609Rat
41152665LOC120094046U5 spliceosomal RNA74265756642657674Rat
1308322Myf5myogenic factor 574280294642806177Rat
3134Myf6myogenic factor 674281300842814852Rat
41050361LOC120093580uncharacterized LOC12009358074281525443016555Rat
620779Ptprqprotein tyrosine phosphatase, receptor type, Q74283445543016807Rat
1589018Otoglotogelin-like74306580043211400Rat
620013Ppp1r12aprotein phosphatase 1, regulatory subunit 12A74348280843593689Rat
69065Pawrpro-apoptotic WT1 regulator74364502843725033Rat
41023123Rpl26-ps10ribosomal protein L26, pseudogene 1074370389943716963Rat
41368650LOC120093977small nucleolar RNA SNORA4874371172743711871Rat
41136792LOC120093582uncharacterized LOC12009358274374690243769702Rat
40962771LOC120093799uncharacterized LOC12009379974380844543814458Rat
3803Syt1synaptotagmin 174381320444358020Rat
7658882LOC102547595uncharacterized LOC10254759574397609244001594Rat
9447173Brcc3dcBRCA1/BRCA2-containing complex, subunit 3, domain containing74401488944016646Rat
6493321Rpl31-ps2ribosomal protein L31, pseudogene 274430012344300616Rat
41207487LOC120093800uncharacterized LOC12009380074435876544363310Rat
1594372Hdac1-ps6Histone deacetylase 1, pseudogene 674463472444645145Rat
1306259Nav3neuron navigator 374505220645840471Rat
41236746LOC120093801uncharacterized LOC12009380174505690445073781Rat
1310258E2f7E2F transcription factor 774615053346192739Rat
41210402LOC120093928U6 spliceosomal RNA74633498146335086Rat
61950Csrp2cysteine and glycine-rich protein 274634910946367743Rat
1595790Zdhhc17zinc finger DHHC-type palmitoyltransferase 1774636996346433691Rat
41121043LOC120093583uncharacterized LOC12009358374642615046433558Rat
1588873Pes1-ps4pescadillo ribosomal biogenesis factor 1, pseudogene 474647604946477682Rat
41017733LOC120093585uncharacterized LOC12009358574655092746568690Rat
41054798LOC120093925U6 spliceosomal RNA74655878746558886Rat
2319089Spdl1-ps1spindle apparatus coiled-coil protein 1, pseudogene 174658565446590216Rat
1561474Osbpl8oxysterol binding protein-like 874659694446749888Rat
41366535LOC120093586uncharacterized LOC12009358674667307546678086Rat
1596694Eif5-ps8eukaryotic translation initiation factor 5, pseudogene 874672305846724664Rat
1560748Bbs10Bardet-Biedl syndrome 1074675102846754132Rat
7721657LOC102548498uncharacterized LOC10254849874688330346907932Rat
71094Nap1l1nucleosome assembly protein 1-like 174693327846957853Rat
41211178LOC120093965small nucleolar RNA SNORA4874694066446940806Rat
3836Phlda1pleckstrin homology-like domain, family A, member 174696743346969637Rat
7728983LOC102548561uncharacterized LOC10254856174720865647220235Rat
11427685LOC108351449uncharacterized LOC10835144974732740847337493Rat
41375281LOC120093587uncharacterized LOC12009358774734474247363207Rat
11431842LOC108351450uncharacterized LOC10835145074744578247461331Rat
1306183Krr1KRR1, small subunit processome component homolog74747555747486996Rat
1305978Glipr1GLI pathogenesis-related 174748734247498974Rat
1310205Glipr1l2GLIPR1 like 274753300947546737Rat
1563000Glipr1l1GLIPR1 like 174755063747577611Rat
1309826Caps2calcyphosine 274758063647641598Rat
2318888Rpl27a-ps2ribosomal protein L27a, pseudogene 274764285247675130Rat
628829Kcnc2potassium voltage-gated channel subfamily C member 274770003547883979Rat
41098017LOC120093919U6 spliceosomal RNA74817766848177762Rat
2301984Atxn7l3bataxin 7-like 3B74832245148325975Rat
7709076LOC102546573uncharacterized LOC10254657374841026548417520Rat
6486766Tuba1b-ps5tubulin, alpha 1B, pseudogene 574856449248565895Rat
11414169LOC108351454uncharacterized LOC10835145474941918049434582Rat
1585306Arf1-ps4ADP-ribosylation factor 1, pseudogene 474972842149728965Rat
728895Trhdethyrotropin-releasing hormone degrading enzyme74994327150350613Rat
41180745LOC120093589uncharacterized LOC12009358975035015950370342Rat
41120670Trnat-agu25transfer RNA threonine (anticodon AGU) 2575036331750363395Rat
7514887LOC102549403uncharacterized LOC10254940375040092250423295Rat
41208259LOC120093590uncharacterized LOC12009359075043309750440570Rat
1595789Btf3-ps10basic transcription factor 3, pseudogene 1075054446450546990Rat
631332Tph2tryptophan hydroxylase 275068569450789424Rat
9406127LOC103692856nuclear cap-binding protein subunit 2 pseudogene75073889650747463Rat
1307920Tbc1d15TBC1 domain family, member 1575080455350860272Rat
1303150Rab21RAB21, member RAS oncogene family75090405050928890Rat
735209Tmem19transmembrane protein 1975095888450985601Rat
1593643Thap2THAP domain containing 275099291251007582Rat
1306287Zfc3h1zinc finger, C3H1-type containing75100825151064666Rat
41089710LOC120093959small nucleolar RNA SNORA4475101910851019230Rat
11410267Hnrnpa1-ps42heterogeneous nuclear ribonucleoprotein A1, pseudogene 4275104580151047650Rat
41346314LOC120093850MICOS complex subunit Mic10-like75107619551079347Rat
1307733Lgr5leucine rich repeat containing G protein coupled receptor 575108705951221882Rat
41214652Trnap-agg57transfer RNA proline (anticodon AGG) 5775110298851103061Rat
41084931LOC12009359139S ribosomal protein L50, mitochondrial-like75119307151213603Rat
621783Tspan8tetraspanin 875144494651479360Rat
41113964LOC120093938U7 small nuclear RNA75147428051474337Rat
7677619LOC102551386uncharacterized LOC10255138675149007851494499Rat
7638646LOC102551482uncharacterized LOC10255148275150810351519060Rat
41120201LOC120093592uncharacterized LOC12009359275152912251541332Rat
620780Ptprrprotein tyrosine phosphatase, receptor type, R75166259551929605Rat
1596425Taf7l-ps1TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 175176325951764401Rat
41355956LOC120093594uncharacterized LOC12009359475186252251881220Rat
41067918LOC120093595uncharacterized LOC12009359575189986351919776Rat
1305922Ptprbprotein tyrosine phosphatase, receptor type, B75195337552034751Rat
620728Kcnmb4potassium calcium-activated channel subfamily M regulatory beta subunit 475206614552119098Rat
1311672Cnot2CCR4-NOT transcription complex, subunit 275213044552222338Rat
2318367Pdia4-ps1protein disulfide isomerase family A, member 4, pseudogene 175224120052242264Rat
40972102LOC120093596uncharacterized LOC12009359675231948552323305Rat
1564883Rpl12a-ps1ribosomal protein L12, pseudogene 175236672652367448Rat
1562127Myrflmyelin regulatory factor-like75240332452519907Rat
1582946H3f3a-ps5H3.3 histone A, pseudogene 575252344852526265Rat
620650Rab3ipRAB3A interacting protein75253146152575295Rat
1305439Best3bestrophin 375258682452656776Rat
41120395LOC120093598uncharacterized LOC12009359875263629252640179Rat
1597472Rtcb-ps1RNA 2',3'-cyclic phosphate and 5'-OH ligase, pseudogene 175266985552671671Rat
41354498LOC120093599uncharacterized LOC12009359975267695752685404Rat
1307358Lrrc10leucine-rich repeat-containing 1075268697252688369Rat
1359143Cct2chaperonin containing TCP1 subunit 275269272552705478Rat
1308201Frs2fibroblast growth factor receptor substrate 275271125552792738Rat
41286435LOC120093600uncharacterized LOC12009360075279287152805208Rat
1597418Mrpl47-ps1mitochondrial ribosomal protein L47, pseudogene 175284067952841539Rat
1305741Yeats4YEATS domain containing 475285831352865454Rat
1306474RGD1306474similar to RIKEN cDNA 9530003J2375287584252880716Rat
1593616Lyc2lysozyme C type 275288710452894447Rat
3026Lyz2lysozyme 275290681052912154Rat
41016237LOC120093975small nucleolar RNA SNORA4875293013352930274Rat
1304640Cpsf6cleavage and polyadenylation specific factor 675295658953001783Rat
41127999LOC120093601uncharacterized LOC12009360175303123153044412Rat
41061317LOC120093899U6 spliceosomal RNA75312126853121371Rat
41163580LOC120093602uncharacterized LOC12009360275315392053159148Rat
7710554LOC102550217uncharacterized LOC10255021775316179253172907Rat
1310532Cpmcarboxypeptidase M75322564753286220Rat
41397689LOC120093603uncharacterized LOC12009360375322943553235643Rat
1305332Mdm2MDM2 proto-oncogene75329066053315205Rat
11428166LOC108351461uncharacterized LOC10835146175333234453341706Rat
1564876Slc35e3solute carrier family 35, member E375333709153350152Rat
621160Nup107nucleoporin 10775335374053398345Rat
620577Rap1bRAP1B, member of RAS oncogene family75342303953456349Rat
7733495Ndufa13-ps3NADH:ubiquinone oxidoreductase subunit A13, pseudogene 375344091753441370Rat
41116110Sfr1-ps1SWI5-dependent homologous recombination repair protein 1, pseudogene 175345838153461341Rat
41166350LOC120093606uncharacterized LOC12009360675346869753474503Rat
41103456LOC120093607uncharacterized LOC12009360775349040553495755Rat
7725676LOC102550659uncharacterized LOC10255065975351829153525492Rat
41135449LOC120093865basic proline-rich protein-like75354472253546293Rat
1306282Tmem186l1transmembrane protein 186l175355337853570587Rat
11389551LOC108351462uncharacterized LOC10835146275361951753629569Rat
11429701LOC108351463uncharacterized LOC10835146375367989253695346Rat
7718419LOC102551023uncharacterized LOC10255102375371786953729789Rat
1561092Mdm1Mdm1 nuclear protein75372960353766034Rat
1561292Il22interleukin 2275380120653805673Rat
9117410LOC103692876small ubiquitin-related modifier 2 pseudogene75387473853875151Rat
2866Ifnginterferon gamma75390333953907375Rat
41268730LOC120093851uncharacterized LOC12009385175420826754212875Rat
1312039Dyrk2dual specificity tyrosine phosphorylation regulated kinase 275434872454381363Rat
620479Cand1cullin-associated and neddylation-dissociated 175468111454719002Rat
1594497Rps12-ps4ribosomal protein S12, pseudogene75482751854827910Rat
2324060Uqcr11l1ubiquinol-cytochrome c reductase, complex III subunit XI like 175487514454875314Rat
41394217LOC120093612uncharacterized LOC12009361275488826954901551Rat
621667Grip1glutamate receptor interacting protein 175493485655592274Rat
41052312LOC120093802uncharacterized LOC12009380275535615855359497Rat
1560103HelbDNA helicase B75558851055615979Rat
1308846Irak3interleukin-1 receptor-associated kinase 375565394955714371Rat
735173Tmbim4transmembrane BAX inhibitor motif containing 475571869055733277Rat
1308261LlphLLP homolog, long-term synaptic facilitation factor75573531755740341Rat
620617Hmga2high mobility group AT-hook 275587714555998813Rat
41181996LOC120093613uncharacterized LOC12009361375591315555941962Rat
7677968LOC102549309uncharacterized LOC10254930975596419955977306Rat
41260607LOC120093614uncharacterized LOC12009361475597827655988331Rat
7678454LOC102547249uncharacterized LOC10254724975599824456005560Rat
11502995LOC108351467uncharacterized LOC10835146775608042056091186Rat
41374847LOC120093989small nucleolar RNA SNORA1775611925456119374Rat
7542471LOC102547506uncharacterized LOC10254750675612579456140736Rat
41319368LOC120093615uncharacterized LOC12009361575617003956172387Rat
41150806LOC120093616uncharacterized LOC12009361675617856356194792Rat
1596851Msrb3methionine sulfoxide reductase B375626098556426004Rat
1562607Styx-ps1serine/threonine/tyrosine interacting protein, pseudogene 175636338956364593Rat
1596822Lemd3LEM domain containing 375641505356499047Rat
41235016LOC120093617uncharacterized LOC12009361775651237956527620Rat
619774Wif1Wnt inhibitory factor 175654806056618364Rat
1561871Rps10-ps22ribosomal protein S10, pseudogene 2275677264656773237Rat
1305255Tbc1d30TBC1 domain family, member 3075677957056869092Rat
40974068LOC120093619uncharacterized LOC12009361975686911656871824Rat
1305877Gnsglucosamine (N-acetyl)-6-sulfatase75688914856923173Rat
1311450Rassf3Ras association domain family member 375693588857000554Rat
1588588Tbk1TANK-binding kinase 175707783057110868Rat
1305562Xpotexportin for tRNA75711153657152013Rat
2322266Ghitm-ps2growth hormone inducible transmembrane protein, pseudogene 275715622057157537Rat
1561648C7h12orf56similar to human chromosome 12 open reading frame 5675717040657220930Rat
1565498Kics2KICSTOR subunit 275728421357299070Rat
1566260Srgap1SLIT-ROBO Rho GTPase activating protein 175732953257594681Rat
40973776LOC120093620uncharacterized LOC12009362075733351357348361Rat
40943516LOC120093867sentrin-specific protease 2-like75760698957608641Rat
41349511LOC120093868sentrin-specific protease 2-like75767292357674377Rat
41179485LOC120093869sentrin-specific protease 2-like75770148357703091Rat
41225140LOC120093621sentrin-specific protease 2-like75774299757743814Rat
7548711Tmed2-ps1transmembrane p24 trafficking protein 2, pseudogene 175776767257769695Rat
1309356Rxylt1ribitol xylosyltransferase 175777084157782695Rat
1594496Vps54-ps1vacuolar protein sorting 54 homolog (S. cerevisiae), pseudogene 175783223557834588Rat
2185Avpr1aarginine vasopressin receptor 1A75811430658118230Rat
1309528Ppm1hprotein phosphatase, Mg2+/Mn2+ dependent, 1H75833866158599547Rat
2325604Mirlet7imicroRNA let-7i75864248558642569Rat
1308808Mon2MON2 homolog, regulator of endosome-to-Golgi trafficking75864937858728102Rat
11466148Snurfl1SNRPN upstream open reading frame like 175871471358716587Rat
628795Usp15ubiquitin specific peptidase 1575875671458848778Rat
9685075Snora19small nucleolar RNA, H/ACA box 1975878050358780571Rat
1589429Tafa2TAFA chemokine like family member 275894259859418640Rat
40952871LOC120093870basic proline-rich protein-like75944207559443292Rat
41098039LOC120093624uncharacterized LOC12009362475952784359540971Rat
41286787Crb1-ps3crumbs cell polarity complex component 1, pseudogene 375958331659598561Rat
41375035LOC120093987small nucleolar RNA SNORA1775967884959678980Rat
40939206Ftl1-ps8ferritin light chain 1, pseudogene 876082544560837640Rat
7695057LOC102552186uncharacterized LOC10255218676097594361088913Rat
3691Slc16a7solute carrier family 16 member 776104366761211547Rat
7654942LOC102552637uncharacterized LOC10255263776144449561496656Rat
7628604LOC102552423uncharacterized LOC10255242376149810261533554Rat
1561255Lrig3leucine-rich repeats and immunoglobulin-like domains 376181631361866275Rat
40991943LOC120093626uncharacterized LOC12009362676193670861940112Rat
1559995Dppa5l1developmental pluripotency associated 5 like 176252504462526042Rat
41034435Trnat-agu22transfer RNA threonine (anticodon AGU) 2276256550262565574Rat
41075389LOC120093627uncharacterized LOC12009362776262278762636248Rat
11399049LOC108351471uncharacterized LOC10835147176268101762702138Rat
40988719LOC120093981small nucleolar RNA SNORA1776268242462682554Rat
1597486Park7-ps1Parkinsonism associated deglycase, pseudogene 176270611562706995Rat
7525893LOC102557532uncharacterized LOC10255753276270896262710729Rat
1588587Atp23ATP23 metallopeptidase and ATP synthase assembly factor homolog76271475262729893Rat
41359680LOC120093628uncharacterized LOC12009362876275332662760239Rat
11399716LOC108351472uncharacterized LOC10835147276280038462804985Rat
2319209Ctdsp2CTD small phosphatase 276280539862825306Rat
620301Aviladvillin76282545962844103Rat
1593058TsfmTs translation elongation factor, mitochondrial76282899762864784Rat
1590711Eef1akmt3EEF1A lysine methyltransferase 376285330462864558Rat
1593036Mettl1methyltransferase 1, tRNA methylguanosine76286486062869202Rat
69192Cyp27b1cytochrome P450, family 27, subfamily b, polypeptide 176286934062876242Rat
1590688Marchf9membrane associated ring-CH-type finger 976287901762882495Rat
621120Cdk4cyclin-dependent kinase 476288612462889562Rat
1309876Tspan31tetraspanin 3176288955262892428Rat
628844Agap2ArfGAP with GTPase domain, ankyrin repeat and PH domain 276289728262914295Rat
1359574Os9OS9, endoplasmic reticulum lectin76291549862957591Rat
2318153Coq4-ps1coenzyme Q4, pseudogene 176295901462959701Rat
1565117Rps26l1ribosomal protein S26 like 176298168762982757Rat
620490B4galnt1beta-1,4-N-acetyl-galactosaminyl transferase 176298842962996190Rat
1564851Slc26a10solute carrier family 26, member 1076299516563005099Rat
735210Arhgef25Rho guanine nucleotide exchange factor 2576300593863013325Rat
1566181Dtx3deltex E3 ubiquitin ligase 376301376963018431Rat
621711Pip4k2cphosphatidylinositol-5-phosphate 4-kinase type 2 gamma76302000463035086Rat
1303035Kif5akinesin family member 5A76305189463089024Rat
1303182Dctn2dynactin subunit 276309206163107560Rat
1311050Mbd6methyl-CpG binding domain protein 676310756263115841Rat
62391Ddit3DNA-damage inducible transcript 376311564563121203Rat
1305321Mars1methionyl-tRNA synthetase 176312114263138550Rat
11465430Gapdh-ps23Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 2376313856463142507Rat
1305342Arhgap9Rho GTPase activating protein 976314857363157025Rat
621673Gli1GLI family zinc finger 176315692663169579Rat
621196Inhbeinhibin subunit beta E76317622163179209Rat
621194Inhbcinhibin subunit beta C76318414163197630Rat
41303428LOC120093804uncharacterized LOC12009380476319268763199370Rat
1310066R3hdm2R3H domain containing 276321251963340574Rat
7520545Eef1a1-ps12eukaryotic translation elongation factor 1 alpha 1, pseudogene 1276322731663228116Rat
41067915LOC120093917U6 spliceosomal RNA76323651363236622Rat
1308964Stac3SH3 and cysteine rich domain 376334307863350590Rat
2324558Ndufa4l2NDUFA4, mitochondrial complex associated like 276335102163359010Rat
1308582Shmt2serine hydroxymethyltransferase 276335896163364293Rat
628723Nxph4neurexophilin 476336775863376579Rat
1307535Lrp1LDL receptor related protein 176338032563461029Rat
41348715LOC120093805uncharacterized LOC12009380576344527163453892Rat
1309063Stat6signal transducer and activator of transcription 676348022963497551Rat
1311712Nab2Ngfi-A binding protein 276349758963504105Rat
1587179Nemp1nuclear envelope integral membrane protein 176351402563538791Rat
3135Myo1amyosin IA76354298863557944Rat
3809Tac3tachykinin precursor 376356255263569170Rat
1306532Zbtb39zinc finger and BTB domain containing 3976357699863584549Rat
61903Gpr182G protein-coupled receptor 18276358599763589088Rat
41090800LOC120093075retinol dehydrogenase 16-like76360472863613424Rat
735050Rdh16retinol dehydrogenase 1676361671163625053Rat
41109545Rdh16-ps1retinol dehydrogenase 16, pseudogene 176362868663638448Rat
1561812Rdh9retinol dehydrogenase 976364230563645149Rat
631370Rdh7retinol dehydrogenase 776367601663689375Rat
628716Sdr9c7short chain dehydrogenase/reductase family 9C, member 776370378863720325Rat
1311971Uqcrbubiquinol-cytochrome c reductase binding protein76381478463820150Rat
7570063LOC102549197uncharacterized LOC10254919776382025363826069Rat
735158Mterf3mitochondrial transcription termination factor 376382641863844747Rat
40928360LOC1200938965S ribosomal RNA76384051063840625Rat
1308949Ptdss1phosphatidylserine synthase 176384501763906791Rat
1583275Esco2-ps1establishment of cohesion 1 homolog 2 (S. cerevisiae), pseudogene 176394820763951641Rat
1583261Limk2-ps1LIM domain kinase 2, pseudogene 176404610364047200Rat
3649Sdc2syndecan 276412718564239885Rat
628610Cpqcarboxypeptidase Q76426402564830867Rat
9336170LOC103692875translationally-controlled tumor protein pseudogene76436642264373306Rat
41192745LOC120094055U6 spliceosomal RNA76444494264445048Rat
1311262Tspyl5TSPY-like 576488150464885512Rat
1583210Spata1-ps1spermatogenesis associated 1, pseudogene 176498533164989584Rat
1597752Tpt1-ps9tumor protein, translationally-controlled 1 pseudogene 976512195965122559Rat
1562404Rps18l3ribosomal protein S18 like 376514312765143670Rat
41182883LOC120093916U6 spliceosomal RNA76517002665170131Rat
1591678Rps17-ps10ribosomal protein S17, pseudogene 1076523948265239890Rat
1591667Gltp-ps1glycolipid transfer protein, pseudogene 176524160465244954Rat
620992Mtdhmetadherin76530646465365647Rat
41364015LOC120093852uncharacterized LOC12009385276542170165423066Rat
1311853Laptm4blysosomal protein transmembrane 4 beta76543452565477386Rat
1305353Matn2matrilin 276549499665644613Rat
41226631LOC120093957small nucleolar RNA SNORA2876564737865647501Rat
621201Rpl30ribosomal protein L3076564826665651401Rat
41001841LOC120093944small nucleolar RNA SNORA7276564875865648889Rat
1590540Erich5glutamate-rich 576565582965682221Rat
70940Ridareactive intermediate imine deaminase A homolog76569142965705257Rat
1308609Pop1POP1 homolog, ribonuclease P/MRP subunit76570534865733143Rat
40964218LOC120093927U6 spliceosomal RNA76573366365733772Rat
1564315Nipal2NIPA-like domain containing 276577447765884807Rat
41236297LOC120093631uncharacterized LOC12009363176578842665790438Rat
41171344LOC120093976small nucleolar RNA SNORA4876588135665881494Rat
7673256LOC102553465uncharacterized LOC10255346576600282266005251Rat
621525Kcns2potassium voltage-gated channel, modifier subfamily S, member 276602235266028422Rat
68412Stk3serine/threonine kinase 376605320966323292Rat
1305812Osr2odd-skipped related transciption factor 276648784166495003Rat
2320291Uba52-ps2ubiquitin A-52 residue ribosomal protein fusion product 1, pseudogene 276654679966550930Rat
1311183Vps13bvacuolar protein sorting 13 homolog B76655786267128429Rat
9428725LOC103692884pre-mRNA-splicing factor SPF27 pseudogene76662017466628176Rat
1585800Atmin-ps2ATM interactor, pseudogene 276676228366767117Rat
2325477Mir875microRNA 87576686195566862027Rat
620616Cox6ccytochrome c oxidase subunit 6C76712926567142001Rat
1562981Cwc22-ps1CWC22 spliceosome associated protein homolog, pseudogene 176715283467154825Rat
1565056Rps24-ps17ribosomal protein S24, pseudogene 1776716762267168537Rat
1565493Rgs22regulator of G-protein signaling 2276718853167308805Rat
1310225Fbxo43F-box protein 4376733316167346751Rat
2319895Polr2kRNA polymerase II, I and III subunit K76734711867359466Rat
1310702Spag1sperm associated antigen 176736147467421369Rat
41261583LOC120094040U4 spliceosomal RNA76741311867413276Rat
1307807Rnf19aring finger protein 19A, RBR E3 ubiquitin protein ligase76742583367465214Rat
7499219Rnf19al1ring finger protein 19A, RBR E3 ubiquitin protein ligase like 176746314367474348Rat
41311683Ldha-ps28lactate dehydrogenase A, pseudogene 2876747783267482843Rat
7630248LOC102554030uncharacterized LOC10255403076749537167497855Rat
1309382Ankrd46ankyrin repeat domain 4676764720267668180Rat
1309483Snx31sorting nexin 3176767651467776925Rat
619838Pabpc1poly(A) binding protein, cytoplasmic 176777743867789731Rat
3980Ywhaztyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta76794135367963651Rat
6497839LOC100910524uncharacterized LOC10091052476811051368115078Rat
1563959Zfp706zinc finger protein 70676816749668174121Rat
40982949Ftl1-ps7ferritin light chain 1, pseudogene 776830712868307785Rat
1561191Grhl2grainyhead-like transcription factor 276840028768530269Rat
1560287Ncaldneurocalcin delta76853267168964740Rat
40939488Nacc1-ps1nucleus accumbens associated 1, pseudogene 176858832768589999Rat
41101397LOC12009387660S ribosomal protein L29-like76865036068650662Rat
40991499LOC120093633uncharacterized LOC12009363376891795168929768Rat
41182468LOC120093634uncharacterized LOC12009363476900814269032204Rat
1306045Rrm2bribonucleotide reductase regulatory TP53 inducible subunit M2B76907702469108742Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10221D7Arb1722675811322458113450Ratregion
10880D7Mgh2212475288832652888450Ratregion
34051D7Mit2823272673740126737633Ratregion
34055D7Mit2214273320007033200212Ratregion
34172D7Mgh1221776775960667759823Ratregion
34634D4Mgh538375811434658114729Ratregion
33664D7Mit726873131025731310525Ratregion
36099D7Rat2514475679321056793354Ratregion
36263D7Rat2916673085810830858274Ratregion
36317D7Rat16617475922594759226115Ratregion
37236D7Rat5111674725178347251899Ratregion
37256D7Rat10614774391053643910683Ratregion
37258D7Rat10723274442107944421311Ratregion
37270D7Rat7624073106006631060306Ratregion
37370D13Rat7920472882132728821522Ratregion
35178D7Rat4717472522328925223463Ratregion
35180D7Rat4317076173665261736830Ratregion
36894D7Rat19318872666939026669578Ratregion
37004D7Rat18116273807380838073970Ratregion
37772DXRat5327973910017639100207Ratregion
37838D7Rat7513376376898163769114Ratregion
37838D7Rat7513376377335763773500Ratregion
36691D7Rat2716072940968329409863Ratregion
36715D7Rat3014072782894927829089Ratregion
34789D7Rat4613174875897948759110Ratregion
34880D7Rat3114172602921026029351Ratregion
34920D7Rat2813873146824031468378Ratregion
34999D7Rat4414676200445262004598Ratregion
35749D7Rat4517676390260863902784Ratregion
39614D7Rat16723775310609653106333Ratregion
39746D7Rat17019272671583826716030Ratregion
39830D7Rat16324276503798665038228Ratregion
39884D7Rat16920774771946647719673Ratregion
38002D4Rat9121873577173435771942Ratregion
38198D7Rat6923476046045260460686Ratregion
38376D7Rat10926072687820826878468Ratregion
40494D7Rat19414372543852625438669Ratregion
40552D7Rat15114772765456927654716Ratregion
38606D7Rat11022776908995769090184Ratregion
38630D7Rat10422972741134427411573Ratregion
38754D7Rat5721775920106959201286Ratregion
38766D7Rat8923373133391731334150Ratregion
40058D7Rat14615275361691753617069Ratregion
40164D7Rat16413476528724765287381Ratregion
38794D7Rat7323675361271453612950Ratregion
39008D7Rat9212873023913030239258Ratregion
39012D7Rat9825074975349649753746Ratregion
39016D7Rat10323174110969241109925Ratregion
39094D7Rat5823375826487858265113Ratregion
39480D7Rat16523376572863465728867Ratregion
42215D7Arb168774374701243747099Ratregion
42821D7Rat18225673052789030528146Ratregion
42822D7Rat21414972782892127829070Ratregion
42823D7Rat21325473274870732748961Ratregion
42824D7Rat18014573390791133908054Ratregion
42826D7Rat21013974643188446432023Ratregion
42828D7Rat20920375762948357629662Ratregion
42830D7Rat20725575664188756642142Ratregion
42831D7Rat22814775797580457975951Ratregion
41252D7Rat14916672989088329891047Ratregion
42336D7Rat22223972975750429757737Ratregion
42337D7Rat22123073878749838787728Ratregion
42339D7Rat22024375853205558532298Ratregion
42340D7Rat23014576329436763294498Ratregion
40812D7Rat8321873480105234801270Ratregion
40862D7Rat14511876129036361290481Ratregion
41078D7Rat14412276814380968143931Ratregion
41106D7Rat14714674659953146599681Ratregion
41542D7Rat15018873007389030074080Ratregion
44214D7Got7729476803272468033020Ratregion
44231D7Got1615772471033524710736Ratregion
44231D7Got1615772471057724710736Ratregion
44232D7Got1718972602914526029334Ratregion
44233D7Got1827772742017327420450Ratregion
44234D7Got1918672865252928652715Ratregion
44235D7Got2212172906271929062840Ratregion
44237D7Got2310572999644729996552Ratregion
44238D7Got2115173087138230871533Ratregion
44239D7Got2015873131031531310473Ratregion
44240D7Got2629273210482332105115Ratregion
44241D7Got2815773250339032503549Ratregion
44242D7Got2716973320005833200227Ratregion
44243D7Got2424572972937029729615Ratregion
44244D7Got2514373356985933570002Ratregion
44245D7Got3025873465726534657523Ratregion
44246D7Got2924973465726534657514Ratregion
44247D7Got3213073665550336655633Ratregion
44248D7Got3114673665549736655643Ratregion
44249D7Got3416774133691041337077Ratregion
44250D7Got3715474049899340499147Ratregion
44251D7Got15724974410810444108355Ratregion
44252D7Got3321474530844145308655Ratregion
44253D7Got8328574796220047962485Ratregion
44255D7Got3912874913859049138718Ratregion
44256D7Got919974887586048875959Ratregion
44257D7Got8017175003291450033085Ratregion
44258D7Got14816675141562751415793Ratregion
44259D7Got4016475410309154103255Ratregion
44262D7Got4425775852809758528354Ratregion
44265D7Got4126475485817054858434Ratregion
44266D7Got4924775476962754769874Ratregion
44267D7Got4814275814366558143807Ratregion
60575D7Got4717275677175456771926Ratregion
60571D7Got3519274552504745525239Ratregion
60572D7Got3618674044426440444450Ratregion
60574D7Got4318475665361656653800Ratregion
60819D7Wox319176400245764002648Ratregion
67815D7Uwm1115674659587446596030Ratregion
67831D7Uwm1820672559875125598966Ratregion
629585D7Got4514875661217156612319Ratregion
61292D7Uwm913973552616135526300Ratregion
62504D7Uia313074133367441333804Ratregion
66379D7Uia539176137158761371978Ratregion
67753D7Uwm2033775863234358632680Ratregion
67791D7Uwm817972882470428824885Ratregion
1631140D7Got21014476247463062474774Ratregion
1632072D7Wox3312874994751949947647Ratregion
1632357D7Got22917876161027161610449Ratregion
1579067D10Chm25021875014650150146536Ratregion
1628011D7Got20910776081152960811636Ratregion
1628211D7Wox3536673489495934895325Ratregion
1629518DXGot14229576573810665738175Ratregion
1629834D7Got23927176356929563569566Ratregion
1629994D7Got22019076406273664062926Ratregion
1630048D7M6Mit12322476548435465484578Ratregion
1639140D7Wox3923675291295652913192Ratregion
1641372D7Got2089776015611560156212Ratregion
1641727D7Got26125276809324968093496Ratregion
1641727D7Got26125276809330568093496Ratregion
1639772D7Got25513776900984969009986Ratregion
1632848D7Got23715675168505351685209Ratregion
1632864D7Got21125976648517466485433Ratregion
1632961D7Got23017874654194146542119Ratregion
1633105D7Got22620475762954557629747Ratregion
1633564D7Got20723775518545355185690Ratregion
1639913D7Wox5214573004096630041111Ratregion
1640041D7Got25823376695141366951646Ratregion
1640450D7Got25611473871028438710398Ratregion
1640598D7Got25225676090697860907234Ratregion
1635099D14Got14710076409441164094511Ratregion
1635099D14Got14710076409441164094511Ratregion
1635672D7Got23617374265634842656521Ratregion
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5066328PMC152658P271876312025763120975Ratregion
5063208BI30141920575232182852322033Ratregion
5084074AA94417119475331196053312154Ratregion
5084310AI17650519475106414251064336Ratregion
5086145AI45414818075783348057833661Ratregion
5086183BM38473817975236933052369509Ratregion
5086220AI10328018475253084952531033Ratregion
5087026BQ20825218775434776654347953Ratregion
5087044BM38911821975333695053337169Ratregion
5087118AA80079918974832260048322789Ratregion
5087360AW53306920872522622225226430Ratregion
5086504AA80017117574040025340400428Ratregion
5086549BM38580819872787101227871210Ratregion
5082927BF39042915172952086029521012Ratregion
5089043AU04892114174504495645045097Ratregion
5089073AU04893917076406273964062909Ratregion
5089211AU04902116775541462955414796Ratregion
5089929AU04944820575464231754642522Ratregion
5083251BF41703121475147700051477214Ratregion
5089557AU04922617274190853341908705Ratregion
5088583AU04865627174760635047606621Ratregion
5088885AU04882726474642916046429424Ratregion
5089653AU04928315875293056352930721Ratregion
5084128AI23333111472425945724259571Ratregion
5081557BE11737421372939008929390302Ratregion
5081751BE11804118272854821028548392Ratregion
5084350AA79975719773232071432320911Ratregion
5084878AA80018417575875681158756986Ratregion
5082265BE11908216275561308455613246Ratregion
5082451BE11943315475753587957536033Ratregion
5090771AU04995428076840810968408391Ratregion
5088295AU04848424972720107227201321Ratregion
5088359AU04852220974909550049095709Ratregion
5088397AU04854525173478355934783810Ratregion
5085367BQ21008916575650133556501500Ratregion
5090385AU04971927175462774454629303Ratregion
5088675AU04871021174186102741861238Ratregion
5081216RH14203121372559808325598296Ratregion
5081240RH14204621373437462534374838Ratregion
5081368AI02972821275284076952840981Ratregion
5085495BQ19905018172979404529794226Ratregion
5090099AU04954921575757526157575476Ratregion
5090155AU04958329474729238447292678Ratregion
5088985AU04888625673121951031219765Ratregion
5089117AU04896417073404620534046375Ratregion
5089125AU04896817475504268155042855Ratregion
5085790BF38811118772865648828656675Ratregion
5080940RH14187120075290621752906417Ratregion
5084454AA85042011572559293325593048Ratregion
5081086RH14195718274574439145744573Ratregion
5081202RH14202362476299630262996926Ratregion
5084768AI00834718872565125525651892Ratregion
5084768AI00834718872565170425651892Ratregion
5083109BI28174821375865120358651416Ratregion
5083241BI27573117975468136954681548Ratregion
5083343AI70362822772776874727768974Ratregion
5081665BE11791516572669864626698811Ratregion
5085246AI59847022075108784051088060Ratregion
5085661AW53551920176777764767777848Ratregion
5085687AI23151316972861395128614120Ratregion
5085892BE09964618075090130950901489Ratregion
5085918BM38443917873782042537820603Ratregion
5083791AI41292611472559684225596956Ratregion
5084036AI01167717775340686353407040Ratregion
5134356D7Uwm2425675168502951685285Ratregion
5502940Tmpo99072565713425658124Ratregion
5507563WI-1439515173409467234095830Ratregion
5504196UniSTS:25969387876315882863159707Ratregion
5503664UniSTS:46547840376315709963157502Ratregion
5503788UniSTS:471082136475268698852688352Ratregion
5504466PMC212738P320276288692062887122Ratregion
5504272D19S653E8374505228745052370Ratregion
5504318D14S655E074695508146956484Ratregion
5504813ha2151129475730565957306635Ratregion
5505239Shmt27076336127963361349Ratregion
5505294Lgr5131375108968251090995Ratregion
5505514DXS1232076070644760707416Ratregion
5506805G4577730373052785130528154Ratregion
5507027fk81g07.x197474973636649736538Ratregion
5507091UniSTS:22445117076349766363497833Ratregion
5500055UniSTS:23647313475571921355719347Ratregion
5500270D12S1376E9174513945545139546Ratregion
5500165D16Mit7544976700790767007946Ratregion
5502557RH12532379473018301930183813Ratregion
5503019B4galnt121776299009162990920Ratregion
5500575RH13603120775267111652671323Ratregion
5500837D3S416114174636606946366850Ratregion
5500523RH13587015076536410065364250Ratregion
5503700MARC_36444-36445:1067884409:185875269638652697244Ratregion
5501147PMC150726P430476312076363121067Ratregion
5501337ECD21593149172618411526185606Ratregion
5501400Myf680974281358342814392Ratregion
5501436Snrpn35875871475758715094Ratregion
5501472D7S22468475331391853314002Ratregion
5501734MARC_10159-10160:996678914:141176564149265641903Ratregion
5501962MARC_21230-21231:1032890530:140674281355142813957Ratregion
5501700MGF85273495763834958490Ratregion
55027409STS0113976816766068167799Ratregion
5502427RH12481212076536314365363263Ratregion
5502641RH12612320576816607868166283Ratregion
5502895Kif5a170076305662163058321Ratregion
Position Markers

Peak: (D7Rat147)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2746,599,531 - 46,599,681 (+)MAPPER
Rnor_6.0753,881,455 - 53,881,604NCBI
Rnor_5.0753,890,984 - 53,891,133UniSTS
RGSC_v3.4750,163,959 - 50,164,849RGD
RGSC_v3.4750,164,660 - 50,164,809UniSTS
RGSC_v3.4750,164,126 - 50,164,809UniSTS
RGSC_v3.1750,185,102 - 50,185,251RGD
RH 3.4 Map7394.4RGD
RH 3.4 Map7394.4UniSTS
RH 2.0 Map7361.8RGD
SHRSP x BN Map729.74RGD
Cytogenetic Map7q21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2303629Vencon3Ventilatory control QTL 37.25respiration trait (VT:0001943)respiration rate (CMO:0000289)74110969256793354Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)72940968353612950Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)71816950526029351Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634319Bw119Body weight QTL 1195.44abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)72782894927829089Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
61435Cia4Collagen induced arthritis QTL 45.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)75811322462004598Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general number of animals used: 70 days old 363 F2 rats inducing agent: intraperitoneal administration of alcohol 3.5 g/kg 1334439
qtl_general measurement method: spectrophotometric enzyme assay was done to determine the blood ethanol concentration 1334439
qtl_general software package used: Map Manager QTX 1334439
qtl_statistics Likelihood Ratio: 13.6 1334439