Tmpo (thymopoietin) - Rat Genome Database

Name: Tmpo
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Tmpo (thymopoietin) Rattus norvegicus

Analyze

Symbol:

Tmpo

Name:

thymopoietin

RGD ID:

3875

Description:

Predicted to enable identical protein binding activity. Predicted to act upstream of or within regulation of DNA-templated transcription. Located in nuclear inner membrane. Orthologous to human TMPO (thymopoietin); INTERACTS WITH 1,2,4-trimethylbenzene; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

lamina-associated polypeptide 2; lamina-associated polypeptide 2, isoform beta; LAP2; Thymopoietin (lamina associated polypeptide 2); thymopoietin isoform beta; TP beta

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMPO (thymopoietin)	HGNC	Ensembl, HomoloGene, NCBI, OMA, OrthoDB
Mus musculus (house mouse):	Tmpo (thymopoietin)	HGNC	NCBI, OMA, HomoloGene, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Tmpo (thymopoietin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMPO (thymopoietin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMPO (thymopoietin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmpo (thymopoietin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMPO (thymopoietin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMPO (thymopoietin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmpo (thymopoietin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Tmpo (thymopoietin)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TMPO (thymopoietin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmpoa (thymopoietin a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	tmpob (thymopoietin b)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	25,642,752 - 25,667,756 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	7	25,586,725 - 25,667,727 (-)	Ensembl
Rnor_6.0	7	31,847,412 - 31,872,416 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	31,847,410 - 31,872,423 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	31,934,412 - 31,959,343 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	28,086,576 - 28,111,800 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	7	28,106,846 - 28,132,071 (-)	NCBI
Celera	7	22,769,113 - 22,794,062 (-)	NCBI		Celera
Cytogenetic Map	7	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amyloidosis (ISO)

arrhythmogenic right ventricular cardiomyopathy (ISO)

cardiomyopathy (ISO)

dilated cardiomyopathy (ISO)

dilated cardiomyopathy 1T (ISO)

familial hypertrophic cardiomyopathy (ISO)

fetal akinesia deformation sequence syndrome 1 (ISO)

hypertrophic cardiomyopathy (ISO)

hypertrophic cardiomyopathy 25 (ISO)

Loeys-Dietz syndrome 2 (ISO)

Loeys-Dietz Syndrome, Type 1b (ISO)

Marfan Syndrome Type 2 (ISO)

Myocardial Ischemia (ISO)

rheumatoid arthritis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,1-dichloroethene (ISO)

1,2,4-trimethylbenzene (EXP)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

1-nitropyrene (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

4-hydroxyphenyl retinamide (ISO)

4-phenylbutyric acid (ISO)

5-azacytidine (ISO)

7,12-dimethyltetraphene (EXP)

aconitine (EXP)

afimoxifene (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

aristolochic acid (ISO)

Aroclor 1254 (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

azathioprine (ISO)

benzatropine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

bortezomib (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

cisplatin (ISO)

clozapine (ISO)

cobalt dichloride (EXP,ISO)

cocaine (EXP)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

disodium selenite (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

enzyme inhibitor (ISO)

ethyl methanesulfonate (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

genistein (ISO)

gentamycin (EXP)

glafenine (EXP)

hydrogen peroxide (ISO)

isoflavones (EXP)

ivermectin (ISO)

ketamine (EXP)

lead(0) (ISO)

lead(2+) (ISO)

leflunomide (ISO)

menadione (ISO)

methyl methanesulfonate (ISO)

methylparaben (ISO)

N-nitrosodiethylamine (ISO)

nickel atom (ISO)

nickel dichloride (ISO)

nitroglycerin (EXP)

oxaliplatin (EXP)

palbociclib (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (ISO)

phenethyl isothiocyanate (EXP)

phenobarbital (EXP,ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

piroxicam (ISO)

potassium dichromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

progesterone (EXP,ISO)

propanal (ISO)

propiconazole (ISO)

raloxifene (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

succimer (ISO)

sulindac sulfide (ISO)

tamibarotene (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thalidomide (ISO)

titanium dioxide (ISO)

topotecan (EXP)

tremolite asbestos (ISO)

triadimefon (ISO)

Tributyltin oxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

troglitazone (ISO)

trovafloxacin (EXP)

valproic acid (ISO)

vincaleukoblastine (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial phosphate ion transmembrane transport (IEA)

nuclear membrane reassembly (NAS)

regulation of DNA-templated transcription (ISO)

Cellular Component

chromatin (ISO)

integral component of membrane (IEA)

mitochondrial inner membrane (IEA)

nuclear envelope (IEA,ISO)

nuclear inner membrane (IDA)

nuclear membrane (ISO)

nucleus (ISO)

Molecular Function

DNA binding (IEA)

identical protein binding (ISO)

inorganic phosphate transmembrane transporter activity (IEA)

lamin binding (TAS)

protein binding (IPI,ISO)

symporter activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	LAP2alpha and BAF transiently localize to telomeres and specific regions on chromatin during nuclear assembly.	Dechat T, etal., J Cell Sci. 2004 Dec 1;117(Pt 25):6117-28. Epub 2004 Nov 16.
2.	Cloning of a cDNA for lamina-associated polypeptide 2 (LAP2) and identification of regions that specify targeting to the nuclear envelope.	Furukawa K, etal., EMBO J 1995 Apr 18;14(8):1626-36.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
11.	Integral membrane proteins of the nuclear envelope are dispersed throughout the endoplasmic reticulum during mitosis.	Yang L, etal., J Cell Biol. 1997 Jun 16;137(6):1199-210.

Additional References at PubMed

PMID:9305626	PMID:11591818	PMID:16760672	PMID:17284516	PMID:17562312	PMID:18809722	PMID:19946888	PMID:25468996

Genomics

Comparative Map Data

Tmpo
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	25,642,752 - 25,667,756 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	7	25,586,725 - 25,667,727 (-)	Ensembl
Rnor_6.0	7	31,847,412 - 31,872,416 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	31,847,410 - 31,872,423 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	31,934,412 - 31,959,343 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	28,086,576 - 28,111,800 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	7	28,106,846 - 28,132,071 (-)	NCBI
Celera	7	22,769,113 - 22,794,062 (-)	NCBI		Celera
Cytogenetic Map	7	q13	NCBI

TMPO
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	98,515,573 - 98,550,351 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	12	98,515,579 - 98,550,351 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	98,909,351 - 98,944,129 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	97,433,540 - 97,466,866 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	12	97,411,909 - 97,430,789	NCBI
Celera	12	98,573,064 - 98,608,807 (+)	NCBI
Cytogenetic Map	12	q23.1	NCBI
HuRef	12	95,970,915 - 96,005,626 (+)	NCBI		HuRef
CHM1_1	12	98,874,305 - 98,909,119 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	98,488,849 - 98,523,648 (+)	NCBI

Tmpo
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	90,983,433 - 91,017,614 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	10	90,983,433 - 91,017,177 (-)	Ensembl
GRCm38	10	91,147,571 - 91,181,752 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	91,147,571 - 91,181,315 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	90,610,316 - 90,634,327 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	10	90,591,557 - 90,601,334 (-)	NCBI			mm8
Celera	10	93,141,641 - 93,165,652 (-)	NCBI		Celera
Cytogenetic Map	10	C2	NCBI
cM Map	10	45.66	NCBI

Tmpo
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	34,535,306 - 34,554,835 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	34,526,420 - 34,556,740 (+)	NCBI	ChiLan1.0	ChiLan1.0

TMPO
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	12	99,513,335 - 99,547,506 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	99,514,803 - 99,546,535 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	12	96,100,509 - 96,135,364 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

TMPO
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	37,923,392 - 37,959,979 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	37,932,891 - 37,959,246 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	38,305,113 - 38,342,820 (+)	NCBI
ROS_Cfam_1.0	15	38,586,847 - 38,624,544 (+)	NCBI
ROS_Cfam_1.0 Ensembl	15	38,596,088 - 38,624,544 (+)	Ensembl
UMICH_Zoey_3.1	15	37,858,711 - 37,896,405 (+)	NCBI
UNSW_CanFamBas_1.0	15	37,951,431 - 37,989,091 (+)	NCBI
UU_Cfam_GSD_1.0	15	38,224,990 - 38,260,912 (+)	NCBI

Tmpo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	21,961,559 - 21,989,703 (-)	NCBI
SpeTri2.0	NW_004936492	14,972,391 - 15,000,115 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMPO
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	85,315,290 - 85,346,538 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	85,317,648 - 85,346,528 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	89,640,642 - 89,669,567 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMPO
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	93,815,870 - 93,852,577 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	11	93,817,820 - 93,853,703 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666037	151,219,876 - 151,256,234 (-)	NCBI	Vero_WHO_p1.0

Tmpo
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	9,009,085 - 9,036,747 (-)	Ensembl	HetGla_female_1.0		hetGla2
HetGla 1.0	NW_004624750	9,009,085 - 9,036,713 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

AW214352

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	25,642,903 - 25,643,036 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	31,847,564 - 31,847,696	NCBI	Rnor6.0
Rnor_5.0	7	31,934,563 - 31,934,695	UniSTS	Rnor5.0
RGSC_v3.4	7	28,086,727 - 28,086,859	UniSTS	RGSC3.4
Celera	7	22,769,264 - 22,769,396	UniSTS
Cytogenetic Map	7	q13	UniSTS

RH128337

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	25,655,577 - 25,655,774 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	31,860,238 - 31,860,434	NCBI	Rnor6.0
Rnor_5.0	7	31,947,234 - 31,947,430	UniSTS	Rnor5.0
RGSC_v3.4	7	28,099,401 - 28,099,597	UniSTS	RGSC3.4
Celera	7	22,781,922 - 22,782,118	UniSTS
Cytogenetic Map	7	q13	UniSTS

AI008347

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	25,651,255 - 25,651,892 (+)	MAPPER	mRatBN7.2
mRatBN7.2	7	25,651,704 - 25,651,892 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	31,856,365 - 31,856,552	NCBI	Rnor6.0
Rnor_6.0	7	31,855,916 - 31,856,552	NCBI	Rnor6.0
Rnor_5.0	7	31,943,361 - 31,943,548	UniSTS	Rnor5.0
Rnor_5.0	7	31,942,912 - 31,943,548	UniSTS	Rnor5.0
RGSC_v3.4	7	28,095,079 - 28,095,715	UniSTS	RGSC3.4
RGSC_v3.4	7	28,095,528 - 28,095,715	UniSTS	RGSC3.4
Celera	7	22,778,049 - 22,778,236	UniSTS
Celera	7	22,777,600 - 22,778,236	UniSTS
RH 3.4 Map	7	154.3	UniSTS
Cytogenetic Map	7	q13	UniSTS

Tmpo

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	25,657,134 - 25,658,124 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	31,861,795 - 31,862,784	NCBI	Rnor6.0
Rnor_5.0	7	31,948,791 - 31,949,780	UniSTS	Rnor5.0
RGSC_v3.4	7	28,100,958 - 28,101,947	UniSTS	RGSC3.4
Celera	7	22,783,479 - 22,784,468	UniSTS
Cytogenetic Map	7	q13	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	27829089	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	31962314	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	31962314	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34000259	Rat
2317047	Wbc4	White blood cell count QTL 4		0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	7	1	35342956	Rat
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	44782185	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1	44822433	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	664270	26029351	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
10755438	Coatc9	Coat color QTL 9		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	3529280	48529280	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	5329019	50329019	Rat
10755440	Coatc10	Coat color QTL 10		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	7496499	52496499	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	7573985	52573985	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	9462246	58265113	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	9462246	98011544	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	9866467	60460686	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	15573889	60573889	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
2317059	Aia15	Adjuvant induced arthritis QTL 15	2.46		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	17004598	62004598	Rat
10755451	Coatc11	Coat color QTL 11		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	17944357	62944357	Rat
70207	Niddm31	Non-insulin dependent diabetes mellitus QTL 31	3.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	18169505	26029351	Rat
61369	Mcs2	Mammary carcinoma susceptibility QTL 2	3.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	19032807	35526300	Rat
1354637	Scl30	Serum cholesterol level QTL 30	3.7		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	7	19654317	49753746	Rat
1354644	Spl4	Serum phospholipid level QTL 4	4.9		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	7	19654317	49753746	Rat
1354639	Spl5	Serum phospholipid level QTL 5	3.9		blood LDL phospholipid amount (VT:0010505)	blood low density lipoprotein phospholipid level (CMO:0001568)	7	19654317	52888450	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	19654317	84928080	Rat
2290372	Gluco33	Glucose level QTL 33	2.71		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	20555705	29891047	Rat
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	21921195	66921195	Rat
1641885	Alcrsp9	Alcohol response QTL 9			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	7	24099606	69099606	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	24751841	69751841	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	147
Count of miRNA genes:	111
Interacting mature miRNAs:	120
Transcripts:	ENSRNOT00000012715
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	41	57	41	19	41	8	10	74	35	41	11	8
Low		2						1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001395714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001395715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_012887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC095650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U18314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000011494 ⟹ ENSRNOP00000011494

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	25,586,725 - 25,619,394 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000012715 ⟹ ENSRNOP00000012715

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	25,642,752 - 25,667,727 (-)	Ensembl
Rnor_6.0 Ensembl	7	31,847,410 - 31,872,423 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080824 ⟹ ENSRNOP00000070805

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	25,611,938 - 25,619,401 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000095834 ⟹ ENSRNOP00000092044

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	25,655,558 - 25,667,702 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097150 ⟹ ENSRNOP00000084254

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	25,642,752 - 25,667,727 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000111659 ⟹ ENSRNOP00000090294

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	25,642,752 - 25,667,727 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112365 ⟹ ENSRNOP00000078350

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	25,642,752 - 25,667,727 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113184 ⟹ ENSRNOP00000091703

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	25,611,937 - 25,619,383 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113551 ⟹ ENSRNOP00000087575

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	25,586,725 - 25,667,727 (-)	Ensembl

RefSeq Acc Id:

NM_012887 ⟹ NP_037019

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	25,642,753 - 25,667,711 (-)	NCBI
Rnor_6.0	7	31,847,413 - 31,872,371 (-)	NCBI
Rnor_5.0	7	31,934,412 - 31,959,343 (-)	NCBI
RGSC_v3.4	7	28,086,576 - 28,111,800 (-)	RGD
Celera	7	22,769,113 - 22,794,062 (-)	RGD

Sequence:

show sequence

GGCACGAGGCTCGCTGCGGGCTCCAGGCTTGGCCGCACTTGCTCACCAGTGGTGCGCCCGGGGC
TTTTGTGGCTTAGCCGGCCTGGGCTTTGTGTCCGAGTTCTGCTCCGTGCCTGCGGCGCTTCTCC
CGGTCAGGGATTCCCGAGGCGGCGTGCGCAGCCCCCGGGACCAGCGAGCGATCGAGCGAGCGCG
CCGGCTTGAGCGGTGGCGACTGCGAGGGGCCGAGGAGGAGAGAAGGAGGGGGACGAGATGCCGG
AGTTCCTAGAGGACCCTTCGGTCCTGACCAAAGACAAGTTGAAGAGCGAGTTGGTCGCCAACAA
CGTGACGCTCCCGGCCGGCGAGCAGCGCAAGGACGTGTACGTGCAGCTCTACCTGCAGCACCTC
ACGGCGCGCAACCGGCCGCCGCTCGCCGCGGGAGCCAACAGCAAAGGGCCGCCCGACTTCTCGA
GCGACGAGGAGCGCGAGCCCACCCCAGTGCTTGGCTCCGGGGCCTCCGTGGGTCGCGGCCGCGG
CGCCGTCGGCAGGAAAGCCACAAAGAAAACTGATAAGCCCAGGCCAGAAGATAAAGATGATCTG
GATGTGACAGAGCTCTCTAACGAAGAACTTCTGGAACAGCTTGTGAGATATGGAGTGAATCCTG
GTCCCATTGTGGGAACCACCAGGAAGCTGTATGAGAAGAAGCTGTTGAAGCTGAGGGAACAGGG
AGCAGAATCGAGATCCTCTACTCCTCTCCCAACAGTCTCTTCCTCTGCAGAAAACACGAGGCAG
AATGGAAGTAATGACTCTGACAGATACAGTGACAATGACGAAGACTCTAAAATAGAGCTCAAGC
TTGAGAAGAGAGAGCCGCTAAAGGGCAGAGCAAAGACTCCAGTAACACTCAAGCAAAGGAGGAT
TGAGCACAATCAGAGCTATTCTGAAGCTGGAGTAACTGAGACTGAATGGACAAGTGGATCTTCA
AAAGGCGGACCTCTGCAGGCATTAACTAGGGAGTCCACGAGAGGGTCGAGAAGAACTCCAAGGA
GAAGGGTGGAACCCTCACAGCATTTTCGTGTAGATGGTGCAGTAATTTCAGAGAGTACTCCCAT
AGCTGAGACTATAAAGGCTTCCAGCAACGACTCCTTAGTGGCCAATAGGTTGACTGGAAATTTC
AAGCATGCATCTTCTATTCTGCCAATCACTGAATTCTCAGACATAACCAGAAGAACACCAAAGA
AACCATTGACAAGAGCTGAAGTGGGAGAAAAAACAGAGGAAAGAAGAGTAGAAAGGGATATTCT
GAAGGAAATGTTCCCGTATGAAGCCTCTACTCCAACCGGAATTAGTGCTAGTTGCCGCAGACCA
ATCAAAGGTGCTGCCGGCCGGCCGCTCGAGCTCAGTGACTTCAGGATGGAAGAATCGTTCTCAT
CTAAGTACGTCCCGAAGTACGTTCCCTTGGCAGACGTCAAGTCGGAAAAGACAAAGAAGGGACG
CTCCGTTCCCATGTGGATAAAAATGCTGCTGTTTGCTCTCGTGGCGGGTTTTTTGTTTTTGGTC
TATCAAGCTATGGAAACCAACCAAGGAAACCCCTTCACTAATTTTCTTCAAGATACTAAAATAT
CCAACTGAAGAAATCATTTCGGCACATCCGACTCGATCTCCTGTTTTTAATAACTGTAGAAAAG
CATCTGTGTCCACTTGTTGGCCGAAGAACTAAATTGTGATTTCACCTCAGTAAAGGTAGCGCTG
CGTTGGAAAGCAGACAGGAAGCTTACCTGGATCTCATTTCAATGTTTTGGACTTTGGAGATCAC
ACTGTGCCATATGAATAATTTTTTTAGCTCCAGAACTTTTTTGTAGGCTTTATTTTTTTAATGT
GGACATCTTATTTCACTTTTGGGGAAAATGCATTGTTTTGTGTATTTGAAAAATAAGGCAAAAC
ATGGTGATGTAATGTGAAGCTACACATTAAATACTTGGAATTCTTACAGAAAAGATTTATGACT
TATTCTCTGCTGAGTAAAAATGTTAGAAATGTGAATGGCGTTCAGTAAGAGAAGCGGTCACGAG
TTGTGCTTCCTTCCATATGCAGCGGTTTGTCCGTGGAAGGTCCAGCAATAAGCTCTTCTGGGAC
TCCTGTCGTGCGTGTGGTGTCGCTGGCGCACCTGCCACACTGCTCACTAGAATATTTTCATATC
ATGAAAGTGCTACGTCATTAAAGCCCTGAGTACACTTAGTTTTCCACTGGGATCTTGGAGAGCA
ACATAGATACCTGCTTAGGGAGCCTTTAGCTGGCTGCGCGCGTCTAAGAGACCGAGGGCTAGCT
AGAAGCTCCCGTTGGGATCCTGTGCTTGTATTTACGGCAAAGCATCTATCCCGTCCATCCAGCT
CATCAGACTGTTCTGTAGGTAAATAAGCATGGGGGTGTTTGTTTAGAGTTAGAAACTAAACACC
AGTCCCCTCCACTTCAGTCCGATTCCATTGTCGTCTTTTAACCAAAAAAAAGTTTTCCTGGCCA
GGGATTTTTGTTTTGCTTTGTTTTAGATGGAGTTGGGGTGTTGAGATTTTTGTTTGTTTTAGGC
ATGTAATTCCTGATGTAATTTGATTTAAAAGTATAACTGACTTGCTTTTAAATCACATATATAG
TAGCTAATGCTTAATTTGTAATTTCAAATAAGGTGGGCATTATGGTTCTGTGTATTCCTGAAGT
GATTAACGATATCCTTATGGTTGTCTTTTTTAGCTGAAATTTACCTCATGTATGGCTTAGATGA
TGTTGCAGTCGATTTAAATTTTGGTAAAAATCAAGTACAGCATAAACATTTTTAACTAAATCAT
TTAAGTTGCAATTTTACAGTCATTGACCACAAAGCACACTAAAAATGTAAATTATTTTTAATAA
CATCCGGAATGTAAAGACAGTTTTAATTTTTACAAAGGAGGAAGCTGAATATGAATATCTAGAC
CAGCACACAACTTTGACTTAATGTTTACTGTGTTTAGCTTATAGATATGTCGTAGGCATTTGAA
GTAAACTTCTGCCCCAGAGACCAGAACATGGACCAGAACATGTAGGCCTGGTCCGTGAGGCGTG
TGGGGAGCTGACTTAGATCTGAAGTGCTTTCCTCTCAAAGACAAGCCACAAGGGGCATGTTTTA
CTCAACTTTCCCTCTCTACAGTGACAGCCATCTTTCTTTGTTCTCAGACACAGCTTCTCATATT
GCTTTCAGTCATCTGTTTATAATTAAAAATTGTGAGAAGCCCCATTTGATGTTTAAAAACAGGG
GTGGGGGTTAATCTGGCTTCACATTTCTATAAGGTCGCTCTGGATAGGGAAGTGTGGTCCAGTA
CAGTGAAAGTCGGACCAGGTAAAACATGCCATTTTCTTTTTAAAAGCGTGTACTTGGTCTTTTG
TCTGTGTCTGTTTTATTCCACTAGAGTAAATGTGTCCTTGATGTAAATGCAAAGCATTTATTAA
TTCGTAGATGTAGACTTTACAATATAATTCAATAATAAAGTAATTAACCTCT

hide sequence

RefSeq Acc Id:

XM_008765218 ⟹ XP_008763440

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	25,655,553 - 25,667,756 (-)	NCBI
Rnor_6.0	7	31,860,213 - 31,872,416 (-)	NCBI

Sequence:

show sequence

ACAGGCTCCCCCTCCCCACCCCACGCACTAGCTTGTGTGTGGGCTAGGCTCGCTGCGGGCTCCA
GGCTTGGCCGCACTTGCTCACCAGTGGTGCGCCCGGGGCTTTTGTGGCTTAGCCGGCCTGGGCT
TTGTGTCCGAGTTCTGCTCCGTGCCTGCGGCGCTTCTCCCGGTCAGGGATTCCCGAGGCGGCGT
GCGCAGCCCCCGGGACCAGCGAGCGATCGAGCGAGCGCGCCGGCTTGAGCGGTGGCGACTGCGA
GGGGCCGAGGAGGAGAGAAGGAGGGGGACGAGATGCCGGAGTTCCTAGAGGACCCTTCGGTCCT
GACCAAAGACAAGTTGAAGAGCGAGTTGGTCGCCAACAACGTGACGCTCCCGGCCGGCGAGCAG
CGCAAGGACGTGTACGTGCAGCTCTACCTGCAGCACCTCACGGCGCGCAACCGGCCGCCGCTCG
CCGCGGGAGCCAACAGCAAAGGGCCGCCCGACTTCTCGAGCGACGAGGAGCGCGAGCCCACCCC
AGTGCTTGGCTCCGGGGCCTCCGTGGGTCGCGGCCGCGGCGCCGTCGGCAGGAAAGCCACAAAG
AAAACTGATAAGCCCAGGCCAGAAGATAAAGATGATCTGGATGTGACAGAGCTCTCTAACGAAG
AACTTCTGGAACAGCTTGTGAGATATGGAGTGAATCCTGGTCCCATTGTGGGAACCACCAGGAA
GCTGTATGAGAAGAAGCTGTTGAAGCTGAGGGAACAGGGAGCAGAATCGAGATCCTCTACTCCT
CTCCCAACAGTCTCTTCCTCTGCAGAAAACACGAGGCAGAATGGAAGTAATGACTCTGACAGAT
ACAGTGACAATGACGAAGGAAAGAAGAAAGAACACAAGAAAGTGAAGTCCGCTAGGGATTGTGT
TCCTTTTTCTGAACTTGCATCTACTCCCTCTGGTGCATTTTTTCAGGGTATTTCTTTCCCTGAA
ATCTCCGCCCGTCCTCCTTTGGGCAGGACTGAACTGCAGGCAGCTAAAAAAGTACATACTGCTA
AGGGAGACCCACCTAGGGACACTCATGCTGATACAGCCTTGCCTGGAAAGGGACAGACGCAGAA
GTTAGCCCCTGGACGGAGCTTATTTATTCCTTCAGAGTCTAGCTATGATAGATGTGTAGAGAAA
AGCTCTTCACCATCTTCTCAGCGTCAATTTGCTGCCAGGCTGGTCTCTGCTGCAGCGTCTCCTT
CACTGATCAGAGAAACCACTACTACTTACTGTAAGGACGTAGTAGAAAATATTTGCCGTGGAGG
GAAGAGTAGAGCTCAGCCATCGCGTGCTGAGGAGCCTCATGTTTCAGATCAGTCAGTTTTCTCT
AGTGAAAGAGAAGTGCTGCAAGAGTCGGAGAGGTCCCAGGTCATTTCTCCTCCACTTGCTCAGG
CAATCCGAGAGTATGTCAATTCTCTGTTGGTCCAGGGTGGGGTCAGCAGTTTGCCTGGGACTTC
TGATTCTGTACCTACACTGGATGTAGAAAACATATGTAAGAGACTTAGCCAGTCCAGCCATCCA
GAATCTGAATCCCTGTCCCCTCCCCGAAAAGTCCCTAGGCTCAGTGAGAAGCCAGTAAAGGGAG
GGGACTCTGGCTCCTGTGTGGCATTCCAGAATACACCTGGATCCGAACATAGGTCTTCTTTGGG
CAAAAGTGTTGTCTCTCATTCTCTTACTACTCTGGGAATAGAAGTGTCTGAACAGCCACGGCGG
GATAAAATAGATGCCTCAGAACCGTCGTTCCCTCTCCATGAGTCTATCGTAAAGGTCATTGAAG
AGGAGTGGCAGCAAATTGATAGGCAGCTGCCGATGGTGGCATGCAAATATCCAGTTTCTTCCAG
CGAGGCAACCCGGATATTATCAGTTCCAAAAGTAGATGATGAGATCCTGGGGTTTATTTCTGAA
GCCACCCCAAGAGCAGCCACTCAGGCATCCTCCACTGAGTCTTGTGATAAACAGTTGGACTTGG
CTCTCTGTAGGTCTTACGAAGCTGCAGCATCAGCATTGCAGATCGCAGCCCATACCGCCTTCGT
GGCTAAGTCTCTGCAAGCTGACATAAGTCAGGCTGCACAGATGATTAATTCCGATCCTAATGAT
GCACTGCAGGCCCTGGAGATTCTGAGCAGAGCCTATGATGCAGCATCCTATCTTTGTGACGCTG
CATTTGATGAAGCGAGGATGTGTGCCTGCACCATGGGGTCTTCTACCATGGGTCGGCGGTATCT
GTGGTTGAAGGACTGTAAGATCAGTCCAGCTTCTAAGAATAAACTAACTGTTGCCCCCTTTAAG
GGTGGAGCGTTATTTGGAGGGGAAGTACACAAAGTGATTAAAAAGCGTGGAAATAAGCAGTAAT
AAGATTAAGGACAAAGACAGAAATGTTGACTTGGAGAATTCGTGGACCTTTCTATGGATTTAGT
CTCCTAATGGAGCCGATTTCAAGGTGTTAAGCTCCCACTCATCAAGTTATAGTATAACGGCACA
TATCAAGACCTAGTACCATTGAAGCTTGATAGATCACATCACACTTGTCTCACAAGAATGTACA
GCTTCCTATTTTATATGACACTCTGGGTTTACACGGAGTCCCAGCAACTGAAATAATCAGTAGA
ACCCTCACTTGCTTTAGTATGCCATTCACATCCTTCCTTATGTGTAGGTCGGAGTTAAACATTG
TTAGTCCTTTTGTTTTTTATTTTCCCTGCTCACAGGAGTTTGGTTTTGGGAAGTCTAGTGCATA
GGCATGATTTCAGTCTGCTCTGCTTTGTGCCGCCTGCCTTCATTACGTACATCTGTTTTGCTAA
TAGTCATTTTGTTGTCCACTCAGTACATTGCCAGACATCTTACAGCTGACCTTTGTACCAGAAT
TTTTAGCCAAGCATCTATCTACACACTCCACATCTGTCTGCACTCTTGTTCATACTTCTGTCTG
CAGAGAACTTTTATAATTCTAGACCAGTGCAACAAACTTACTGATTGATTCAGACACGTGTGTG
CCTGTATCAGAGGGAAAGGCACTGCTCCTCAGTGGTGAGATGCATAAGCTTCACATGCATGTGA
CTCTGAGTTCAGTTCACAGCCACTTAAAACAGTTTAATGAGCATTTAGATCTAGAGATACTTTG
TAAGCAACTGATAAGAGGTAGATTGCATATCTGTATAACACATTTATGCACATTTTTAGTAAAG
GAATAGAAAGCAATGTAGCTTCATGTCTGATAGAGGAGGTAGTCAGTCCCTGGTTACACAAGTA
CATGGGCCACATTTGAGGAACACGGGGATGATAAATAAGTAGAATCTGCTGTACCTCATGGTCG
CTCAACATGACACTACAAAGATGGGGCTTTTATTTTCTACATGTATTTAAAGATATTTTTGTAT
GTCCTGCATAGTTAAATTACATATCTGGATGCTAAAACCAATGAGGTATTTTCTAAAAACCTTG
AGAATTTTTACTCTCCCCCAATGTCTGTGTCTGTATGAAGCAATGTATTGCCCTGCTGTCACTT
GTATGGCTGTAAGGTAAGGTTCCAGTTGCAGAGCCAGTCTGGAAGATAGTCTGCAGTATAATCA
AATGCAGCCCTGGTGTGCATGTCCAGCACCCCGTGTTGTTAGGCTACTCACTCCATCCCTGCAG
CTGTTATGTCTTCTAAAATGTACATGCATACATGTACCTGTTAAGTGCTGTGTGATTTCTTTAA
AACAATGTATGCCTGTAGAATGCCTCTACGAATTCAATAAAGTTGTTAAATTTGAA

hide sequence

RefSeq Acc Id:

XM_008765219 ⟹ XP_008763441

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	25,642,752 - 25,667,756 (-)	NCBI
Rnor_6.0	7	31,847,412 - 31,872,416 (-)	NCBI

Sequence:

show sequence

ACAGGCTCCCCCTCCCCACCCCACGCACTAGCTTGTGTGTGGGCTAGGCTCGCTGCGGGCTCCA
GGCTTGGCCGCACTTGCTCACCAGTGGTGCGCCCGGGGCTTTTGTGGCTTAGCCGGCCTGGGCT
TTGTGTCCGAGTTCTGCTCCGTGCCTGCGGCGCTTCTCCCGGTCAGGGATTCCCGAGGCGGCGT
GCGCAGCCCCCGGGACCAGCGAGCGATCGAGCGAGCGCGCCGGCTTGAGCGGTGGCGACTGCGA
GGGGCCGAGGAGGAGAGAAGGAGGGGGACGAGATGCCGGAGTTCCTAGAGGACCCTTCGGTCCT
GACCAAAGACAAGTTGAAGAGCGAGTTGGTCGCCAACAACGTGACGCTCCCGGCCGGCGAGCAG
CGCAAGGACGTGTACGTGCAGCTCTACCTGCAGCACCTCACGGCGCGCAACCGGCCGCCGCTCG
CCGCGGGAGCCAACAGCAAAGGGCCGCCCGACTTCTCGAGCGACGAGGAGCGCGAGCCCACCCC
AGTGCTTGGCTCCGGGGCCTCCGTGGGTCGCGGCCGCGGCGCCGTCGGCAGGAAAGCCACAAAG
AAAACTGATAAGCCCAGGCCAGAAGATAAAGATGATCTGGATGTGACAGAGCTCTCTAACGAAG
AACTTCTGGAACAGCTTGTGAGATATGGAGTGAATCCTGGTCCCATTGTGGGAACCACCAGGAA
GCTGTATGAGAAGAAGCTGTTGAAGCTGAGGGAACAGGGAGCAGAATCGAGATCCTCTACTCCT
CTCCCAACAGTCTCTTCCTCTGCAGAAAACACGAGGCAGAATGGAAGTAATGACTCTGACAGAT
ACAGTGACAATGACGAAGACTCTAAAATAGAGCTCAAGCTTGAGAAGAGAGAGCCGCTAAAGGG
CAGAGCAAAGACTCCAGTAACACTCAAGCAAAGGAGGATTGAGCACAATCAGGTGGCCAATAGG
TTGACTGGAAATTTCAAGCATGCATCTTCTATTCTGCCAATCACTGAATTCTCAGACATAACCA
GAAGAACACCAAAGAAACCATTGACAAGAGCTGAAGTGGGAGAAAAAACAGAGGAAAGAAGAGT
AGAAAGGGATATTCTGAAGGAAATGTTCCCGTATGAAGCCTCTACTCCAACCGGAATTAGTGCT
AGTTGCCGCAGACCAATCAAAGGTGCTGCCGGCCGGCCGCTCGAGCTCAGTGACTTCAGGATGG
AAGAATCGTTCTCATCTAAGTACGTCCCGAAGTACGTTCCCTTGGCAGACGTCAAGTCGGAAAA
GACAAAGAAGGGACGCTCCGTTCCCATGTGGATAAAAATGCTGCTGTTTGCTCTCGTGGCGGGT
TTTTTGTTTTTGGTCTATCAAGCTATGGAAACCAACCAAGGAAACCCCTTCACTAATTTTCTTC
AAGATACTAAAATATCCAACTGAAGAAATCATTTCGGCACATCCGACTCGATCTCCTGTTTTTA
ATAACTGTAGAAAAGCATCTGTGTCCACTTGTTGGCCGAAGAACTAAATTGTGATTTCACCTCA
GTAAAGGTAGCGCTGCGTTGGAAAGCAGACAGGAAGCTTACCTGGATCTCATTTCAATGTTTTG
GACTTTGGAGATCACACTGTGCCATATGAATAATTTTTTTAGCTCCAGAACTTTTTTGTAGGCT
TTATTTTTTTAATGTGGACATCTTATTTCACTTTTGGGGAAAATGCATTGTTTTGTGTATTTGA
AAAATAAGGCAAAACATGGTGATGTAATGTGAAGCTACACATTAAATACTTGGAATTCTTACAG
AAAAGATTTATGACTTATTCTCTGCTGAGTAAAAATGTTAGAAATGTGAATGGCGTTCAGTAAG
AGAAGCGGTCACGCAGTTGTGCTTCCTTCCATATGCAGCGGTTTGTCCGTGGAAGGTCCAGCAA
TAAGCTCTTCTGGGACTCCTGTCGTTCGTGTGGTGTCGCTGGCGCAGCCCTGCCACACTGCTCA
CTAGAATATTTTCATATCATGAAAGTGCTACGTCATTAAAGCCCTGAGTACACTTAGTTTTCCA
CTGGGATCTTGGAGAGCAACATAGATACCTGCTTAGGGAGCCTTTAGCTGGCTGCGCGCGTCTA
AGAGCCGAGGGCTAGCTAGAAGCTCCCGTTGGGATCCTGTGCTTGTATTTACGGCAAAGCATCT
ATCCCGTCCATCCAGCTCATCAGACTGTTCTGTAGGTAAATAAGCATGGGGGTGTTTGTTTAGA
GTTAGAAACTAAACACCAGTCCCCTCCACTTCAGTCCGATTCCATTGTCGTCTTTTAACCAAAA
AAAAGTTTTCCTGGCCAGGGATTTTTGTTTTGCTTTGTTTTAGATGGAGTTGGGGTGTTGAGAT
TTTTGTTTGTTTTAGGCATGTAATTCCTGATGTAATTTGATTTAAAAGTATAACTGACTTGCTT
TTAAATCACATATATAGTAGCTAATGCTTAATTTGTAATTTCAAATAAGGTGGGCATTATGGTT
CTGTGTATTCCTGAAGTGATTAACGATATCCTTATGGTTGTCTTTTTTAGCTGAAATTTACCTC
ATGTATGGCTTAGATGATGTTGCAGTCGATTTAAATTTTGGTAAAAATCAAGTACAGCATAAAC
ATTTTTAACTAAATCATTTAAGTTGCAATTTTACAGTCATTGACCACAAAGCACACTAAAAATG
TAAATTATTTTTAATAACATCCGGAATGTAAAGACAGTTTTAATTTTTACAAAGGAGGAAGCTG
AATATGAATATCTAGACCAGCACACAACTTTGACTTAATGTTTACTGTGTTTAGCTTATAGATA
TGTCGTAGGCATTTGAAGTAAACTTCTGCCCCAGAGACCAGAACATGTAGGCCTGGTCCGTGAG
GGCGTGTGGGGAGCTGACTTAGATCTGAAGTGCTTTCCTCTCAAAGACAAGCCACAAGGGGCAT
GTTTTACTCAACTTTCCCTCTCTACAGTGACAGCCATCTTTCTTTGTTCTCAGACACAGCTTCT
CATATTGCTTTCAGTCATCTGTTTATAATTAAAAATTGTGAGAAGCCCCATTTGATGTTTAAAA
ACAGGGGTGGGGGTTAATCTGGCTTCACATTTCTATAAGGTCGCTCTGGATAGGGAAGTGTGGT
CCAGTACAGCGAAAGTCGGACCAGGTAAAACATGCCATTTTCTTTTTTAAAAGCGTGTATTTGG
TCTTTTGTCTGTGTCTGTTTTATTCCACTAGAGTAAATGTGTCCTTGATGTAAATGCAAAGCAT
TTATTAATTCGTAGATGTAGACTTTACAATATAATTCAATAATAAAGTAATTAACCTCTA

hide sequence

RefSeq Acc Id:

XM_008765220 ⟹ XP_008763442

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	25,642,752 - 25,667,756 (-)	NCBI
Rnor_6.0	7	31,847,412 - 31,872,416 (-)	NCBI

Sequence:

show sequence

ACAGGCTCCCCCTCCCCACCCCACGCACTAGCTTGTGTGTGGGCTAGGCTCGCTGCGGGCTCCA
GGCTTGGCCGCACTTGCTCACCAGTGGTGCGCCCGGGGCTTTTGTGGCTTAGCCGGCCTGGGCT
TTGTGTCCGAGTTCTGCTCCGTGCCTGCGGCGCTTCTCCCGGTCAGGGATTCCCGAGGCGGCGT
GCGCAGCCCCCGGGACCAGCGAGCGATCGAGCGAGCGCGCCGGCTTGAGCGGTGGCGACTGCGA
GGGGCCGAGGAGGAGAGAAGGAGGGGGACGAGATGCCGGAGTTCCTAGAGGACCCTTCGGTCCT
GACCAAAGACAAGTTGAAGAGCGAGTTGGTCGCCAACAACGTGACGCTCCCGGCCGGCGAGCAG
CGCAAGGACGTGTACGTGCAGCTCTACCTGCAGCACCTCACGGCGCGCAACCGGCCGCCGCTCG
CCGCGGGAGCCAACAGCAAAGGGCCGCCCGACTTCTCGAGCGACGAGGAGCGCGAGCCCACCCC
AGTGCTTGGCTCCGGGGCCTCCGTGGGTCGCGGCCGCGGCGCCGTCGGCAGGAAAGCCACAAAG
AAAACTGATAAGCCCAGGCCAGAAGATAAAGATGATCTGGATGTGACAGAGCTCTCTAACGAAG
AACTTCTGGAACAGCTTGTGAGATATGGAGTGAATCCTGGTCCCATTGTGGGAACCACCAGGAA
GCTGTATGAGAAGAAGCTGTTGAAGCTGAGGGAACAGGGAGCAGAATCGAGATCCTCTACTCCT
CTCCCAACAGTCTCTTCCTCTGCAGAAAACACGAGGCAGAATGGAAGTAATGACTCTGACAGAT
ACAGTGACAATGACGAAGACTCTAAAATAGAGCTCAAGCTTGAGAAGAGAGAGCCGCTAAAGGG
CAGAGCAAAGACTCCAGTAACACTCAAGCAAAGGAGGATTGAGCACAATCAGGTGGGAGAAAAA
ACAGAGGAAAGAAGAGTAGAAAGGGATATTCTGAAGGAAATGTTCCCGTATGAAGCCTCTACTC
CAACCGGAATTAGTGCTAGTTGCCGCAGACCAATCAAAGGTGCTGCCGGCCGGCCGCTCGAGCT
CAGTGACTTCAGGATGGAAGAATCGTTCTCATCTAAGTACGTCCCGAAGTACGTTCCCTTGGCA
GACGTCAAGTCGGAAAAGACAAAGAAGGGACGCTCCGTTCCCATGTGGATAAAAATGCTGCTGT
TTGCTCTCGTGGCGGGTTTTTTGTTTTTGGTCTATCAAGCTATGGAAACCAACCAAGGAAACCC
CTTCACTAATTTTCTTCAAGATACTAAAATATCCAACTGAAGAAATCATTTCGGCACATCCGAC
TCGATCTCCTGTTTTTAATAACTGTAGAAAAGCATCTGTGTCCACTTGTTGGCCGAAGAACTAA
ATTGTGATTTCACCTCAGTAAAGGTAGCGCTGCGTTGGAAAGCAGACAGGAAGCTTACCTGGAT
CTCATTTCAATGTTTTGGACTTTGGAGATCACACTGTGCCATATGAATAATTTTTTTAGCTCCA
GAACTTTTTTGTAGGCTTTATTTTTTTAATGTGGACATCTTATTTCACTTTTGGGGAAAATGCA
TTGTTTTGTGTATTTGAAAAATAAGGCAAAACATGGTGATGTAATGTGAAGCTACACATTAAAT
ACTTGGAATTCTTACAGAAAAGATTTATGACTTATTCTCTGCTGAGTAAAAATGTTAGAAATGT
GAATGGCGTTCAGTAAGAGAAGCGGTCACGCAGTTGTGCTTCCTTCCATATGCAGCGGTTTGTC
CGTGGAAGGTCCAGCAATAAGCTCTTCTGGGACTCCTGTCGTTCGTGTGGTGTCGCTGGCGCAG
CCCTGCCACACTGCTCACTAGAATATTTTCATATCATGAAAGTGCTACGTCATTAAAGCCCTGA
GTACACTTAGTTTTCCACTGGGATCTTGGAGAGCAACATAGATACCTGCTTAGGGAGCCTTTAG
CTGGCTGCGCGCGTCTAAGAGCCGAGGGCTAGCTAGAAGCTCCCGTTGGGATCCTGTGCTTGTA
TTTACGGCAAAGCATCTATCCCGTCCATCCAGCTCATCAGACTGTTCTGTAGGTAAATAAGCAT
GGGGGTGTTTGTTTAGAGTTAGAAACTAAACACCAGTCCCCTCCACTTCAGTCCGATTCCATTG
TCGTCTTTTAACCAAAAAAAAGTTTTCCTGGCCAGGGATTTTTGTTTTGCTTTGTTTTAGATGG
AGTTGGGGTGTTGAGATTTTTGTTTGTTTTAGGCATGTAATTCCTGATGTAATTTGATTTAAAA
GTATAACTGACTTGCTTTTAAATCACATATATAGTAGCTAATGCTTAATTTGTAATTTCAAATA
AGGTGGGCATTATGGTTCTGTGTATTCCTGAAGTGATTAACGATATCCTTATGGTTGTCTTTTT
TAGCTGAAATTTACCTCATGTATGGCTTAGATGATGTTGCAGTCGATTTAAATTTTGGTAAAAA
TCAAGTACAGCATAAACATTTTTAACTAAATCATTTAAGTTGCAATTTTACAGTCATTGACCAC
AAAGCACACTAAAAATGTAAATTATTTTTAATAACATCCGGAATGTAAAGACAGTTTTAATTTT
TACAAAGGAGGAAGCTGAATATGAATATCTAGACCAGCACACAACTTTGACTTAATGTTTACTG
TGTTTAGCTTATAGATATGTCGTAGGCATTTGAAGTAAACTTCTGCCCCAGAGACCAGAACATG
TAGGCCTGGTCCGTGAGGGCGTGTGGGGAGCTGACTTAGATCTGAAGTGCTTTCCTCTCAAAGA
CAAGCCACAAGGGGCATGTTTTACTCAACTTTCCCTCTCTACAGTGACAGCCATCTTTCTTTGT
TCTCAGACACAGCTTCTCATATTGCTTTCAGTCATCTGTTTATAATTAAAAATTGTGAGAAGCC
CCATTTGATGTTTAAAAACAGGGGTGGGGGTTAATCTGGCTTCACATTTCTATAAGGTCGCTCT
GGATAGGGAAGTGTGGTCCAGTACAGCGAAAGTCGGACCAGGTAAAACATGCCATTTTCTTTTT
TAAAAGCGTGTATTTGGTCTTTTGTCTGTGTCTGTTTTATTCCACTAGAGTAAATGTGTCCTTG
ATGTAAATGCAAAGCATTTATTAATTCGTAGATGTAGACTTTACAATATAATTCAATAATAAAG
TAATTAACCTCTA

hide sequence

RefSeq Acc Id:

XM_039078463 ⟹ XP_038934391

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	25,642,752 - 25,667,756 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001382643	(Get FASTA)	NCBI Sequence Viewer
	NP_001382644	(Get FASTA)	NCBI Sequence Viewer
	NP_037019	(Get FASTA)	NCBI Sequence Viewer
	XP_008763440	(Get FASTA)	NCBI Sequence Viewer
	XP_008763441	(Get FASTA)	NCBI Sequence Viewer
	XP_008763442	(Get FASTA)	NCBI Sequence Viewer
	XP_038934391	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC52209	(Get FASTA)	NCBI Sequence Viewer
	EDM16939	(Get FASTA)	NCBI Sequence Viewer
	EDM16940	(Get FASTA)	NCBI Sequence Viewer
	EDM16941	(Get FASTA)	NCBI Sequence Viewer
	EDM16942	(Get FASTA)	NCBI Sequence Viewer
	Q62733	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_037019 ⟸ NM_012887

- UniProtKB:

Q62733 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLAAGANSKGPPD
FSSDEEREPTPVLGSGASVGRGRGAVGRKATKKTDKPRPEDKDDLDVTELSNEELLEQLVRYGV
NPGPIVGTTRKLYEKKLLKLREQGAESRSSTPLPTVSSSAENTRQNGSNDSDRYSDNDEDSKIE
LKLEKREPLKGRAKTPVTLKQRRIEHNQSYSEAGVTETEWTSGSSKGGPLQALTRESTRGSRRT
PRRRVEPSQHFRVDGAVISESTPIAETIKASSNDSLVANRLTGNFKHASSILPITEFSDITRRT
PKKPLTRAEVGEKTEERRVERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEES
FSSKYVPKYVPLADVKSEKTKKGRSVPMWIKMLLFALVAGFLFLVYQAMETNQGNPFTNFLQDT
KISN

hide sequence

RefSeq Acc Id:

XP_008763442 ⟸ XM_008765220

- Peptide Label:

isoform X4

- Sequence:

show sequence

MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLAAGANSKGPPD
FSSDEEREPTPVLGSGASVGRGRGAVGRKATKKTDKPRPEDKDDLDVTELSNEELLEQLVRYGV
NPGPIVGTTRKLYEKKLLKLREQGAESRSSTPLPTVSSSAENTRQNGSNDSDRYSDNDEDSKIE
LKLEKREPLKGRAKTPVTLKQRRIEHNQVGEKTEERRVERDILKEMFPYEASTPTGISASCRRP
IKGAAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKKGRSVPMWIKMLLFALVAGFLFLV
YQAMETNQGNPFTNFLQDTKISN

hide sequence

RefSeq Acc Id:

XP_008763441 ⟸ XM_008765219

- Peptide Label:

isoform X3

- Sequence:

show sequence

MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLAAGANSKGPPD
FSSDEEREPTPVLGSGASVGRGRGAVGRKATKKTDKPRPEDKDDLDVTELSNEELLEQLVRYGV
NPGPIVGTTRKLYEKKLLKLREQGAESRSSTPLPTVSSSAENTRQNGSNDSDRYSDNDEDSKIE
LKLEKREPLKGRAKTPVTLKQRRIEHNQVANRLTGNFKHASSILPITEFSDITRRTPKKPLTRA
EVGEKTEERRVERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPK
YVPLADVKSEKTKKGRSVPMWIKMLLFALVAGFLFLVYQAMETNQGNPFTNFLQDTKISN

hide sequence

RefSeq Acc Id:

XP_008763440 ⟸ XM_008765218

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLAAGANSKGPPD
FSSDEEREPTPVLGSGASVGRGRGAVGRKATKKTDKPRPEDKDDLDVTELSNEELLEQLVRYGV
NPGPIVGTTRKLYEKKLLKLREQGAESRSSTPLPTVSSSAENTRQNGSNDSDRYSDNDEGKKKE
HKKVKSARDCVPFSELASTPSGAFFQGISFPEISARPPLGRTELQAAKKVHTAKGDPPRDTHAD
TALPGKGQTQKLAPGRSLFIPSESSYDRCVEKSSSPSSQRQFAARLVSAAASPSLIRETTTTYC
KDVVENICRGGKSRAQPSRAEEPHVSDQSVFSSEREVLQESERSQVISPPLAQAIREYVNSLLV
QGGVSSLPGTSDSVPTLDVENICKRLSQSSHPESESLSPPRKVPRLSEKPVKGGDSGSCVAFQN
TPGSEHRSSLGKSVVSHSLTTLGIEVSEQPRRDKIDASEPSFPLHESIVKVIEEEWQQIDRQLP
MVACKYPVSSSEATRILSVPKVDDEILGFISEATPRAATQASSTESCDKQLDLALCRSYEAAAS
ALQIAAHTAFVAKSLQADISQAAQMINSDPNDALQALEILSRAYDAASYLCDAAFDEARMCACT
MGSSTMGRRYLWLKDCKISPASKNKLTVAPFKGGALFGGEVHKVIKKRGNKQ

hide sequence

RefSeq Acc Id:

ENSRNOP00000012715 ⟸ ENSRNOT00000012715

RefSeq Acc Id:	XP_038934391 ⟸ XM_039078463
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSRNOP00000090294 ⟸ ENSRNOT00000111659

RefSeq Acc Id:

ENSRNOP00000070805 ⟸ ENSRNOT00000080824

RefSeq Acc Id:

ENSRNOP00000084254 ⟸ ENSRNOT00000097150

RefSeq Acc Id:

ENSRNOP00000011494 ⟸ ENSRNOT00000011494

RefSeq Acc Id:

ENSRNOP00000078350 ⟸ ENSRNOT00000112365

RefSeq Acc Id:

ENSRNOP00000087575 ⟸ ENSRNOT00000113551

RefSeq Acc Id:

ENSRNOP00000091703 ⟸ ENSRNOT00000113184

RefSeq Acc Id:

ENSRNOP00000092044 ⟸ ENSRNOT00000095834

Protein Domains

LEM LEM-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62733-F1-model_v2	AlphaFold	Q62733	1-452	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695142

Promoter ID:

EPDNEW_R5667

Type:

initiation region

Name:

Tmpo_1

Description:

thymopoietin

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	31,872,353 - 31,872,413	EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)

ACI/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3875	AgrOrtholog
BioCyc Gene	G2FUF-34462	BioCyc
Ensembl Genes	ENSRNOG00000008797	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000012715	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000078350	ENTREZGENE
	ENSRNOP00000078350.1	UniProtKB/TrEMBL
	ENSRNOP00000084254	ENTREZGENE
	ENSRNOP00000084254.1	UniProtKB/TrEMBL
	ENSRNOP00000087575.1	UniProtKB/TrEMBL
	ENSRNOP00000090294	ENTREZGENE
	ENSRNOP00000090294.1	UniProtKB/TrEMBL
	ENSRNOP00000091703.1	UniProtKB/TrEMBL
	ENSRNOP00000092044	ENTREZGENE
	ENSRNOP00000092044.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000012715	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000095834	ENTREZGENE
	ENSRNOT00000095834.1	UniProtKB/TrEMBL
	ENSRNOT00000097150	ENTREZGENE
	ENSRNOT00000097150.1	UniProtKB/TrEMBL
	ENSRNOT00000111659	ENTREZGENE
	ENSRNOT00000111659.1	UniProtKB/TrEMBL
	ENSRNOT00000112365	ENTREZGENE
	ENSRNOT00000112365.1	UniProtKB/TrEMBL
	ENSRNOT00000113184.1	UniProtKB/TrEMBL
	ENSRNOT00000113551.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.720.40	UniProtKB/Swiss-Prot
InterPro	LEM-like_dom	UniProtKB/Swiss-Prot
	LEM/LEM-like_dom_sf	UniProtKB/Swiss-Prot
	LEM_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:25359	UniProtKB/Swiss-Prot
NCBI Gene	25359	ENTREZGENE
Pfam	LEM	UniProtKB/Swiss-Prot
	Thymopoietin	UniProtKB/Swiss-Prot
PhenoGen	Tmpo	PhenoGen
PROSITE	LEM	UniProtKB/Swiss-Prot
	LEM_LIKE	UniProtKB/Swiss-Prot
SMART	LEM	UniProtKB/Swiss-Prot
	Thymopoietin	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF63451	UniProtKB/Swiss-Prot
TIGR	TC204234
UniProt	A0A8I5ZZ38_RAT	UniProtKB/TrEMBL
	A0A8I6ADD0_RAT	UniProtKB/TrEMBL
	A0A8I6AFR4_RAT	UniProtKB/TrEMBL
	A0A8I6G2M4_RAT	UniProtKB/TrEMBL
	A0A8I6GF99_RAT	UniProtKB/TrEMBL
	A0A8I6GJ63_RAT	UniProtKB/TrEMBL
	LAP2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2003-04-09	Tmpo	thymopoietin		Thymopoietin (lamina associated polypeptide 2)	Name updated	629478	APPROVED
2002-06-10	Tmpo	Thymopoietin (lamina associated polypeptide 2)			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localized to the inner nuclear membrane	634476
gene_domains	contains a large hydrophilic domain with several potential cdc2 kinase phosphorylation sites and a single putative membrane-spanning sequence	634476

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD