Gluco33 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Gluco33 (Glucose level QTL 33) Rattus norvegicus

Symbol: Gluco33
Name: Glucose level QTL 33
RGD ID: 2290372
Trait: blood glucose amount   (VT:0000188)    
Measurement Type: blood glucose level area under curve (AUC)   (CMO:0000350)    
LOD Score: 2.71
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr871 - 31,777,942RGD_MAPPER_PIPELINE
mRatBN7.2720,555,705 - 29,891,047RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0726,508,887 - 36,346,595RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0714,768,165 - 36,408,841RGDRnor5.0
RGSC_v3.4713,170,547 - 32,454,105RGDRGSC3.4
RGSC_v3.1713,170,548 - 32,474,376RGD
Cross Type: intercross
Strains Crossed: CDR/Ygl CDS/Ygl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
CDR/Ygl  (IEA)
CDS/Ygl  (IEA)

References

References - curated
# Reference Title Reference Citation
1. GENDER-SPECIFIC GENETIC DISSECTION OF DIABETES IN A RODENT MODEL IDENTIFIES ICA1 AND NDUFA4 AS MAJOR CANDIDATE GENES. Barkalifa R, etal., Physiol Genomics. 2010 Jun 8.
2. Metabolic and genomic dissection of diabetes in the Cohen rat. Yagil C, etal., Physiol Genomics. 2007 Apr 24;29(2):181-92. Epub 2007 Jan 9.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1308400Chst11carbohydrate sulfotransferase 1172052453520743008Rat
41216819LOC120093923U6 spliceosomal RNA72056520020565301Rat
61959Txnrd1thioredoxin reductase 172083004220914990Rat
1597206Eid3EP300 interacting inhibitor of differentiation 372086007320861395Rat
11513165LOC108351425uncharacterized LOC10835142572086842920891059Rat
9163865LOC103692815uncharacterized LOC10369281572094498320950630Rat
3172Nfybnuclear transcription factor Y subunit beta72096498820980569Rat
1307385Hcfc2host cell factor C272098398621019826Rat
1560432Glt8d2glycosyltransferase 8 domain containing 272102953421081081Rat
620959Tdgthymine-DNA glycosylase72107785321097617Rat
1593359Uqcc6ubiquinol-cytochrome c reductase complex assembly factor 672110472921108135Rat
1310482Hsp90b1heat shock protein 90 beta family member 172111043121124762Rat
1302940Ttc41tetratricopeptide repeat domain 4172112490921188191Rat
1593358Nt5dc35'-nucleotidase domain containing 372119055421247374Rat
628822Stab2stabilin 272124942621433051Rat
41177446LOC120093791uncharacterized LOC12009379172124958221251176Rat
7498642Adnp2l1ADNP homeobox 2 like 172131699121324739Rat
41019105Rpl7a-ps27ribosomal protein L7a, pseudogene 2772142335421424562Rat
1560034C7h12orf42similar to human chromosome 12 open reading frame 4272145518221653232Rat
11355398LOC108351426uncharacterized LOC10835142672153562821539576Rat
11491535LOC108351427uncharacterized LOC10835142772180708721832716Rat
41339453LOC120093792uncharacterized LOC12009379272183891321839416Rat
71010Ascl1achaete-scute family bHLH transcription factor 172190313621906003Rat
3248Pahphenylalanine hydroxylase72193317921998134Rat
2323080Mesp2-ps1mesoderm posterior bHLH transcription factor 2, pseudogene 172199824921999639Rat
41083865LOC120093845uncharacterized LOC12009384572205417522060706Rat
2868Igf1insulin-like growth factor 172228289522361972Rat
40951180Ywhag-ps6tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma, pseudogene 672250088822510407Rat
2314264ParpbpPARP1 binding protein72251142722580834Rat
3358Pmchpro-melanin-concentrating hormone72251193422513250Rat
1307774Nup37nucleoporin 3772255654422609622Rat
40971002LOC120094020U6atac minor spliceosomal RNA72259076622590886Rat
41346602LOC120093767uncharacterized LOC12009376772261161322618714Rat
1563761Washc3WASH complex subunit 372262107822665550Rat
41192836Gapdh-ps32Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 3272267030622673868Rat
41022142Prob1-ps1proline-rich basic protein 1, pseudogene 172268504822707006Rat
1598133Dram1DNA-damage regulated autophagy modulator 172274279422776888Rat
1564821GnptabN-acetylglucosamine-1-phosphate transferase subunits alpha and beta72280050222866336Rat
1359283Chpt1choline phosphotransferase 172286645522915111Rat
3795Sycp3synaptonemal complex protein 372287405522888512Rat
7602377LOC102554140uncharacterized LOC10255414072291524422918204Rat
735102Mybpc1myosin binding protein C172293035023015981Rat
41305107LOC120093549uncharacterized LOC12009354972301205723013510Rat
41153506Gapdh-ps33Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 3372305458623055516Rat
1306272SpicSpi-C transcription factor72306981523077517Rat
1561102Rps12l4ribosomal protein S12-like 472311884523119632Rat
621326Arl1ARF like GTPase 172312000423131173Rat
1560606Utp20UTP20 small subunit processome component72313463023215639Rat
1564146Slc5a8solute carrier family 5 member 872327289123313811Rat
1310252Ano4anoctamin 472332901523738423Rat
6501070LOC100909955peptidyl-prolyl cis-trans isomerase A-like72374357523753559Rat
9187595Rpl9l2ribosomal protein L9 like 272379291723793629Rat
1594151Gas2l3growth arrest-specific 2 like 372380357823836816Rat
628831Nr1h4nuclear receptor subfamily 1, group H, member 472384612223942085Rat
41200052LOC120093931U7 small nuclear RNA72386490423864965Rat
7641052Anxa7-ps2Annexin A7, pseudogene 272389444723896632Rat
628870Slc17a8solute carrier family 17 member 872399421224049498Rat
1305665Scyl2SCY1 like pseudokinase 272406440424117338Rat
1304609Actr6actin related protein 672415025024171057Rat
1594520Bltp3bbridge-like lipid transfer protein family member 3B72418163524261720Rat
1565556Anks1bankyrin repeat and sterile alpha motif domain containing 1B72431333925479307Rat
41008610LOC120094026U2 spliceosomal RNA72460434224604529Rat
41038583LOC120093796uncharacterized LOC12009379672480240224830026Rat
11495246LOC108351597uncharacterized LOC10835159772490393824915896Rat
41277470LOC120093926U6 spliceosomal RNA72494002324940117Rat
41155466LOC120093797uncharacterized LOC12009379772499036524996489Rat
41319396LOC120093795uncharacterized LOC12009379572507314925103124Rat
41018033Snrpn-ps3small nuclear ribonucleoprotein polypeptide N, pseudogene 372525325625253962Rat
40972371Ndufa2-ps4NADH:ubiquinone oxidoreductase subunit A2, pseudogene 472539004525390816Rat
620575Apaf1apoptotic peptidase activating factor 172549414325579540Rat
1305457IkbipIKBKB interacting protein72557986525598548Rat
70986Slc25a3solute carrier family 25 member 372561193725619401Rat
40960245Snora53small nucleolar RNA, H/ACA box 5372561335725613602Rat
3875Tmpothymopoietin72564275225667756Rat
9421619LOC103692820cytochrome b-c1 complex subunit 7 pseudogene72566104525662232Rat
11464810Trnaw-cca1transfer RNA tryptophan (anticodon CCA) 172567834125678412Rat
11462537Trnad-guc1transfer RNA aspartic acid (anticodon GUC) 172567902625679097Rat
1589769Tpgs2-ps1tubulin polyglutamylase complex subunit 2, pseudogene 172573055625731426Rat
1589768Gapdh-ps98Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 9872589535225915853Rat
41248997LOC120093956small nucleolar RNA SNORA2472605931726059438Rat
1565429Rps19-ps6ribosomal protein S19, pseudogene 672639470826395173Rat
7515236LOC102548260uncharacterized LOC10254826072661092526704322Rat
2325347Mir135amicroRNA 135a72661199026612089Rat
41254183LOC120093847uncharacterized LOC12009384772693764326943644Rat
1307750Nedd1NEDD1 gamma-tubulin ring complex targeting factor72723305027274486Rat
41386114LOC120094015small nucleolar RNA SNORA7972723688927237031Rat
1565866Cfap54cilia and flagella associated protein 5472731649827601630Rat
41364186LOC120093552uncharacterized LOC12009355272734776827351084Rat
1565593Cdk17cyclin-dependent kinase 1772768389027765814Rat
1307764Elk3ETS transcription factor ELK372776858227831088Rat
7727462LOC102548950uncharacterized LOC10254895072783371927839466Rat
40991469LOC120093554uncharacterized LOC12009355472792595927936004Rat
41002557Psmb3-ps1proteasome 20S subunit beta 3, pseudogene 172795525027957768Rat
11452399Trnad-guc2transfer RNA aspartic acid (anticodon GUC) 272796938427969455Rat
1311333Lta4hleukotriene A4 hydrolase72796979628001600Rat
7620450LOC102553539uncharacterized LOC10255353972799774428006748Rat
68363Halhistidine ammonia lyase72800744928037701Rat
1308879Amdhd1amidohydrolase domain containing 172804392328059156Rat
1564046Ccdc38coiled-coil domain containing 3872805588328129938Rat
1588229Snrpfsmall nuclear ribonucleoprotein polypeptide F72813042728137129Rat
1565947Ntn4netrin 472818661128300390Rat
2324495Rps21-ps5ribosomal protein S21, pseudogene 572826513528265549Rat
9159198LOC103692824NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial pseudogene72835176828352101Rat
1308216Usp44ubiquitin specific peptidase 4472836416928412039Rat
70995Metap2methionyl aminopeptidase 272841242928440458Rat
1359117Veztvezatin, adherens junctions transmembrane protein72851221428597429Rat
2325619Mir331microRNA 33172852739028527485Rat
41302345LOC120093556uncharacterized LOC12009355672854394228546950Rat
1565609Fgd6FYVE, RhoGEF and PH domain containing 672859760928712908Rat
3200Nr2c1nuclear receptor subfamily 2, group C, member 172871534728768624Rat
1311462Ndufa12NADH:ubiquinone oxidoreductase subunit A1272877133028798316Rat
1307241Tmcc3transmembrane and coiled-coil domain family 372889397229171935Rat
7570684LOC102554269uncharacterized LOC10255426972901693629030555Rat
41240014LOC12009355760S ribosomal protein L31-like72917831129180418Rat
41265557LOC120093558uncharacterized LOC12009355872924232229247760Rat
6488367Atp5mf-ps3ATP synthase membrane subunit f, pseudogene 372925148529251828Rat
10395318Cep83oscentrosomal protein 83, opposite strand72926076729280248Rat
1359593Cep83centrosomal protein 8372928035829389574Rat
41092649LOC120093560uncharacterized LOC12009356072937862429382893Rat
1307420Plxnc1plexin C172939003829543985Rat
41072814LOC120093559uncharacterized LOC12009355972954374029548701Rat
11501359LOC108351432uncharacterized LOC10835143272959175729593257Rat
7507440Rpl36a-ps18ribosomal protein L36A, pseudogene 1872969502029709955Rat
9391515Rpl39-ps13ribosomal protein L39, pseudogene 1372983493629835288Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10764D7Mit2319772228208722282284Ratregion
34051D7Mit2823272673740126737633Ratregion
34078D7Mgh1414972250569522505844Ratregion
36141D7Rat4916072226618522266345Ratregion
37370D13Rat7920472882132728821522Ratregion
35178D7Rat4717472522328925223463Ratregion
36894D7Rat19318872666939026669578Ratregion
37790D7Rat6123172166940521669636Ratregion
36691D7Rat2716072940968329409863Ratregion
36715D7Rat3014072782894927829089Ratregion
36723D7Rat4817072217404622174216Ratregion
34880D7Rat3114172602921026029351Ratregion
39746D7Rat17019272671583826716030Ratregion
38376D7Rat10926072687820826878468Ratregion
40494D7Rat19414372543852625438669Ratregion
40552D7Rat15114772765456927654716Ratregion
38630D7Rat10422972741134427411573Ratregion
40050D7Rat15213372360575423605887Ratregion
42820D7Rat21514672248306122483207Ratregion
42822D7Rat21414972782892127829070Ratregion
41252D7Rat14916672989088329891047Ratregion
42332D7Rat22621872228955622289774Ratregion
42335D7Rat22323372382438123824614Ratregion
42336D7Rat22223972975750429757737Ratregion
44224D7Wox2617872071207520712261Ratregion
44225D7Got1315272080559620805748Ratregion
44228D7Got1429972290963422909933Ratregion
44230D7Got14731072308822823088535Ratregion
44231D7Got1615772471033524710736Ratregion
44231D7Got1615772471057724710736Ratregion
44232D7Got1718972602914526029334Ratregion
44233D7Got1827772742017327420450Ratregion
44234D7Got1918672865252928652715Ratregion
44235D7Got2212172906271929062840Ratregion
44243D7Got2424572972937029729615Ratregion
67831D7Uwm1820672559875125598966Ratregion
66453D3Mco1918172108986321090040Ratregion
67790D7Uwm713172278614722786278Ratregion
67791D7Uwm817972882470428824885Ratregion
1631070D7Wox3717272384617323846345Ratregion
1628149D7Got24516972154709321547262Ratregion
1632640D7Wox5115972085740920857568Ratregion
1633198D7Cebr223372058270320582936Ratregion
1639795D7Got25312672170741221707538Ratregion
1640357D7Got2579572102594521026040Ratregion
7192862Igf119772228208722282284Ratregion
7192864Igf126972228204022282309Ratregion
7193071AW52761810872086026820860376Ratregion
5038742RH12730621372199783621998049Ratregion
5038946RH12742319472938916729389361Ratregion
5036360Igf17772233886922338946Ratregion
5026070RH13079221872561194725612165Ratregion
5028861RH14260816672234018822340354Ratregion
5029039RH14328120972917157129171780Ratregion
5029367RH14452717272374306023743232Ratregion
5026854RH13378519172852518928525380Ratregion
5029429Ascl148272190466921905151Ratregion
5027052RH13454921472853440228534616Ratregion
5027101WI-1423712972939006929390198Ratregion
5029763BE10248915972521603125216190Ratregion
5029807BF38743116672759671827596884Ratregion
5034972RM15412072670383626703956Ratregion
5027409AW21435213372564290325643036Ratregion
5029913BI29189519772286501022865207Ratregion
5035320AW52979215972841251228412671Ratregion
5033219RH13802223872741642927416667Ratregion
5033305RH13834512472812649728126621Ratregion
5025342RH12794818772415040124150588Ratregion
5028047MHAa97h11.seq16072224179222241952Ratregion
5033381RH13862914972504110725041256Ratregion
5033711RH13983620072288925822889458Ratregion
5056083RH14417314172548035325480494Ratregion
5056441RH14438017172431473124314902Ratregion
5056649RH14450011772545665725456774Ratregion
5052033RH9480129772235602022356317Ratregion
5054259RH14312221372098149020981703Ratregion
5055425RH14379415872776973827769896Ratregion
5055433RH14379818572234775122347936Ratregion
5057628BE09578520572560181825602023Ratregion
5055067RH14358712472774797227748096Ratregion
5058528BF39316815172058538020585531Ratregion
5056299RH14429815672343806423438220Ratregion
5058828BF38712915172521876625218917Ratregion
5056617RH14448221572313420723134422Ratregion
5058166BF38673015072959184729591997Ratregion
5056803RH14458915972735992127360080Ratregion
5058860BE10251115072953291029533060Ratregion
5055257RH14369711872723470927234827Ratregion
5059030BF38739119372522235825222551Ratregion
5059716BE09768118372522678225226965Ratregion
5055805RH14401210072547541725475517Ratregion
5058220AA85902419572776124527761440Ratregion
5058350BF41961214772779017527790322Ratregion
5059178BE10297818272383779923837981Ratregion
5059184BE10298819372523654325236736Ratregion
5053301RH14256916272235613222356294Ratregion
5057622BE09574615172724008727240238Ratregion
5053903RH14291713072318380023183930Ratregion
5050228RH13393521572564144225641657Ratregion
5052885RH14233016672559837225598538Ratregion
5053047RH14242326872802194428022212Ratregion
5053105RH14245617872382871923828897Ratregion
5041612RH12895717372757782727578000Ratregion
5041744RH12903320972661099326611202Ratregion
5041064RH12864218872307003223070220Ratregion
5045136RH13100521372288892322889136Ratregion
5045460RH13119118272917168529171867Ratregion
5041578RH12893718072777058727770767Ratregion
5047444RH13233118372881072528810908Ratregion
5048012RH13265819372380368823803882Ratregion
5049076RH13327221172426082224261033Ratregion
5039376RH12767018272274308222743264Ratregion
5048450RH13291119372939169429391887Ratregion
5039888RH12796519272313166723131859Ratregion
5042400RH129412072384636923846561Ratregion
5042880RH12970018972306982123070010Ratregion
5040532RH12833719772565557725655774Ratregion
5042948RH12974019572107790821078103Ratregion
5042294RH12935118072111054421110724Ratregion
5042680RH12958019172313480323134994Ratregion
5072760RH13703722072083009920830319Ratregion
5075382RH13856217772318382323184000Ratregion
5075662RH13872417472083917720839351Ratregion
5075844RH13882918772416235724162544Ratregion
5076064RH13895817272289968322899855Ratregion
5072702RH13700318272118899821189180Ratregion
5076924RH13945822772547886725479094Ratregion
5074894RH13828016272768886627689028Ratregion
5077126RH13957618472547907225479256Ratregion
5076206RH13904012672382699923827125Ratregion
5076628RH13928612972776971527769844Ratregion
5076492RH13920612172813518028135301Ratregion
5077774RH13995119572836362028363815Ratregion
5078924RH14063063072111128421111914Ratregion
5078438RH14034313172098795720988088Ratregion
5079062RH14071312672812978928129915Ratregion
5071778RH13527921672406571924065935Ratregion
5071806RH13529522072111456321114783Ratregion
5073950RH13773217972251305622513235Ratregion
5073502RH13747318372915239029152573Ratregion
5072158RH13668618372547674025476923Ratregion
5074784RH13821614572408516424085309Ratregion
5061780AW53343621972938445229384671Ratregion
5067056AU04799128972595161525952003Ratregion
5067056AU04799128972595171425952003Ratregion
5067206AU04789714972089906920899216Ratregion
5070013RH9441718172233867222338853Ratregion
5069472AU04647524272274921622749460Ratregion
5069538AU04643026272579758325797840Ratregion
5070113RH9448016472199793121998095Ratregion
5070233RH9454917072251306422513234Ratregion
5061926AW52761824672086012920860375Ratregion
5062252AI45450719072235982522360015Ratregion
5064078AW52958518572406453124064716Ratregion
5060880BF39589622072798836527988585Ratregion
5061008BF40167818172527548825275669Ratregion
5062580BF40344319172374831423748505Ratregion
5062698BF40387521072530489825305108Ratregion
5066012BE11651015172769141527691566Ratregion
5064680BF39955120272853540828535610Ratregion
5064914BF39991621672058796820588184Ratregion
5082215AW43531414272099122720991369Ratregion
5087360AW53306920872522622225226430Ratregion
5086549BM38580819872787101227871210Ratregion
5082927BF39042915172952086029521012Ratregion
5084128AI23333111472425945724259571Ratregion
5081557BE11737421372939008929390302Ratregion
5081751BE11804118272854821028548392Ratregion
5084900AI00866513372101335821013491Ratregion
5085000AI17197920372406083124061034Ratregion
5088295AU04848424972720107227201321Ratregion
5081216RH14203121372559808325598296Ratregion
5085495BQ19905018172979404529794226Ratregion
5085790BF38811118772865648828656675Ratregion
5084454AA85042011572559293325593048Ratregion
5086129BQ19986715772311821323118370Ratregion
5084768AI00834718872565125525651892Ratregion
5084768AI00834718872565170425651892Ratregion
5083143BF39086318472173570721735891Ratregion
5083343AI70362822772776874727768974Ratregion
5081665BE11791516572669864626698811Ratregion
5085687AI23151316972861395128614120Ratregion
5083717AI01021721372108076421080977Ratregion
5083791AI41292611472559684225596956Ratregion
5134353D7Uwm2325972362980623630065Ratregion
5502940Tmpo99072565713425658124Ratregion
5507289fb62d09.x1072290873522909745Ratregion
5507289fb62d09.x1072290873522909751Ratregion
5500051UniSTS:23643123472124713821247372Ratregion
5500053UniSTS:23643423872380746823807706Ratregion
5500284D3S168713272280074222800874Ratregion
5500390GDB:38482118272233885722339039Ratregion
5501337ECD21593149172618411526185606Ratregion
5502036MARC_26038-26039:1032450563:158972112216421122753Ratregion
5501866MARC_16386-16387:1017081416:181072235565022356461Ratregion
Position Markers

Flank 1: (D7Rat72)
Rat AssemblyChrPosition (strand)Source
Rnor_5.0714,768,165 - 14,768,377NCBI
RGSC_v3.4713,170,547 - 13,170,758RGD
RGSC_v3.1713,170,548 - 13,170,758RGD
RH 3.4 Map759.4RGD
RH 3.4 Map759.4UniSTS
RH 2.0 Map70.0RGD
SHRSP x BN Map73.5RGD
FHH x ACI Map71.1799RGD
Peak: (D7Rat47)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2725,223,289 - 25,223,463 (+)MAPPER
Rnor_6.0731,427,655 - 31,427,828NCBI
Rnor_5.0731,518,951 - 31,519,124UniSTS
RGSC_v3.4727,660,931 - 27,661,104RGD
RGSC_v3.4727,660,932 - 27,661,105UniSTS
RGSC_v3.1727,681,202 - 27,681,375RGD
RH 3.4 Map7148.5RGD
RH 3.4 Map7148.5UniSTS
RH 2.0 Map7141.7RGD
FHH x ACI Map77.4699RGD
Cytogenetic Map7q13UniSTS
Flank 2: (D7Rat149)
Rat AssemblyChrPosition (strand)Source
GRCr8731,777,776 - 31,777,942 (+)Marker Load Pipeline
mRatBN7.2729,890,883 - 29,891,047 (+)MAPPER
Rnor_6.0736,346,430 - 36,346,595NCBI
Rnor_5.0736,408,676 - 36,408,841UniSTS
RGSC_v3.4732,453,939 - 32,454,105RGD
RGSC_v3.4732,453,940 - 32,454,105UniSTS
RGSC_v3.1732,474,210 - 32,474,376RGD
Celera726,963,649 - 26,963,814UniSTS
SHRSP x BN Map722.06UniSTS
SHRSP x BN Map722.06RGD
Cytogenetic Map7q13UniSTS


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634319Bw119Body weight QTL 1195.44abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)72782894927829089Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)72940968353612950Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)71816950526029351Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general software package used: one-way ANOVA and MultiQTL version 2.5 1626640
qtl_general the SS allele from CDS was responsible for high glucose level 1626640
qtl_general measurement method: rats were fasted overnight and then OGTT was performed 1626640
qtl_general significant cosegregation for blood glucose level was observed 1626640
qtl_general number of animals used: 101 F2 males 1626640
qtl_map this region incorporates 156 known and 77 predicted genes and spans 21 cM 1626640