Chpt1 (choline phosphotransferase 1) - Rat Genome Database

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Gene: Chpt1 (choline phosphotransferase 1) Rattus norvegicus
Analyze
Symbol: Chpt1
Name: choline phosphotransferase 1
RGD ID: 1359283
Description: Predicted to enable diacylglycerol cholinephosphotransferase activity. Predicted to be involved in platelet activating factor biosynthetic process. Predicted to act upstream of or within phosphatidylcholine biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum membrane. Orthologous to human CHPT1 (choline phosphotransferase 1); PARTICIPATES IN glycerophospholipid metabolic pathway; lamivudine pharmacokinetics pathway; ether lipid metabolic pathway; INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cholinephosphotransferase 1; cholinephosphotransferase 1 alpha; diacylglycerol cholinephosphotransferase 1; MGC95241; similar to choline phosphotransferase 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2722,866,455 - 22,915,111 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl722,863,027 - 22,915,103 (-)Ensembl
Rnor_6.0729,019,518 - 29,070,928 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl729,043,916 - 29,070,928 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0729,126,760 - 29,177,859 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4725,171,417 - 25,198,384 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1725,191,687 - 25,218,655 (-)NCBI
Celera720,042,608 - 20,074,943 (-)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-methylcholanthrene  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buspirone  (EXP)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
clarithromycin  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
fenthion  (ISO)
folic acid  (ISO)
isoniazide  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (EXP)
levofloxacin  (EXP)
lithocholic acid  (ISO)
methyl methanesulfonate  (ISO)
miconazole  (ISO)
Muraglitazar  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nimesulide  (EXP)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sunitinib  (ISO)
Tesaglitazar  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thimerosal  (ISO)
titanium dioxide  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Altered mouse cholinephosphotransferase gene expression in kidneys of type 2 diabetic KK/TA mouse. Gohda T, etal., Metabolism 2004 Jul;53(7):842-6.
3. Cloning, genomic organization, and characterization of a human cholinephosphotransferase. Henneberry AL, etal., J Biol Chem 2000 Sep 22;275(38):29808-15.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:20018880  


Genomics

Comparative Map Data
Chpt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2722,866,455 - 22,915,111 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl722,863,027 - 22,915,103 (-)Ensembl
Rnor_6.0729,019,518 - 29,070,928 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl729,043,916 - 29,070,928 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0729,126,760 - 29,177,859 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4725,171,417 - 25,198,384 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1725,191,687 - 25,218,655 (-)NCBI
Celera720,042,608 - 20,074,943 (-)NCBICelera
Cytogenetic Map7q13NCBI
CHPT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812101,697,640 - 101,729,074 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl12101,696,947 - 101,744,140 (+)EnsemblGRCh38hg38GRCh38
GRCh3712102,091,418 - 102,122,852 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612100,615,548 - 100,646,977 (+)NCBINCBI36hg18NCBI36
Build 3412100,593,884 - 100,625,314NCBI
Celera12101,756,108 - 101,786,875 (+)NCBI
Cytogenetic Map12q23.2NCBI
HuRef1299,151,477 - 99,182,455 (+)NCBIHuRef
CHM1_112102,058,098 - 102,089,528 (+)NCBICHM1_1
T2T-CHM13v2.012101,658,866 - 101,690,301 (+)NCBI
Chpt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391088,305,376 - 88,339,855 (-)NCBIGRCm39mm39
GRCm39 Ensembl1088,288,607 - 88,339,935 (-)Ensembl
GRCm381088,469,513 - 88,503,970 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1088,452,745 - 88,504,073 (-)EnsemblGRCm38mm10GRCm38
MGSCv371087,935,558 - 87,966,715 (-)NCBIGRCm37mm9NCBIm37
MGSCv361087,903,332 - 87,933,664 (-)NCBImm8
Celera1090,452,654 - 90,483,954 (-)NCBICelera
Cytogenetic Map10C1NCBI
Chpt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540537,081,024 - 37,093,798 (+)NCBIChiLan1.0ChiLan1.0
CHPT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112102,696,902 - 102,711,871 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12102,692,554 - 102,711,745 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01299,278,842 - 99,311,790 (+)NCBIMhudiblu_PPA_v0panPan3
CHPT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11540,602,570 - 40,631,422 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1540,970,915 - 41,002,862 (+)NCBI
ROS_Cfam_1.01541,256,603 - 41,288,572 (+)NCBI
ROS_Cfam_1.0 Ensembl1541,256,608 - 41,285,469 (+)Ensembl
UMICH_Zoey_3.11540,510,537 - 40,542,472 (+)NCBI
UNSW_CanFamBas_1.01540,619,967 - 40,652,322 (+)NCBI
UU_Cfam_GSD_1.01540,894,340 - 40,926,311 (+)NCBI
Chpt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494519,316,217 - 19,348,113 (-)NCBI
SpeTri2.0NW_00493649212,325,332 - 12,358,521 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHPT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl582,497,648 - 82,544,264 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1582,500,925 - 82,544,390 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2586,453,380 - 86,497,192 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHPT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11196,951,836 - 96,981,560 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1196,952,051 - 96,981,431 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037148,021,231 - 148,051,927 (-)NCBIVero_WHO_p1.0
Chpt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247506,358,030 - 6,372,546 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247506,358,030 - 6,372,391 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D7Got14  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2722,909,634 - 22,909,933 (+)MAPPERmRatBN7.2
Rnor_6.0729,065,460 - 29,065,758NCBIRnor6.0
Rnor_5.0729,172,391 - 29,172,689UniSTSRnor5.0
RGSC_v3.4725,192,915 - 25,193,214RGDRGSC3.4
RGSC_v3.4725,192,916 - 25,193,214UniSTSRGSC3.4
RGSC_v3.1725,213,187 - 25,213,485RGD
Celera720,069,483 - 20,069,782UniSTS
RH 3.4 Map7117.1UniSTS
RH 3.4 Map7117.1RGD
RH 2.0 Map7133.2RGD
Cytogenetic Map7q13UniSTS
RH139836  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2722,889,258 - 22,889,458 (+)MAPPERmRatBN7.2
Rnor_6.0729,045,091 - 29,045,290NCBIRnor6.0
Rnor_5.0729,152,022 - 29,152,221UniSTSRnor5.0
RGSC_v3.4725,172,548 - 25,172,747UniSTSRGSC3.4
Celera720,049,122 - 20,049,321UniSTS
RH 3.4 Map7123.2UniSTS
Cytogenetic Map7q13UniSTS
RH131005  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2722,888,923 - 22,889,136 (+)MAPPERmRatBN7.2
Rnor_6.0729,044,756 - 29,044,968NCBIRnor6.0
Rnor_5.0729,151,687 - 29,151,899UniSTSRnor5.0
RGSC_v3.4725,172,213 - 25,172,425UniSTSRGSC3.4
Celera720,048,787 - 20,048,999UniSTS
RH 3.4 Map7119.96UniSTS
Cytogenetic Map7q13UniSTS
RH138958  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2722,899,683 - 22,899,855 (+)MAPPERmRatBN7.2
Rnor_6.0729,055,513 - 29,055,684NCBIRnor6.0
Rnor_5.0729,162,444 - 29,162,615UniSTSRnor5.0
RGSC_v3.4725,182,969 - 25,183,140UniSTSRGSC3.4
Celera720,059,536 - 20,059,707UniSTS
RH 3.4 Map7122.2UniSTS
Cytogenetic Map7q13UniSTS
fb62d09.x1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2722,908,735 - 22,909,745 (+)MAPPERmRatBN7.2
mRatBN7.2722,908,735 - 22,909,751 (+)MAPPERmRatBN7.2
Rnor_6.0729,064,565 - 29,065,576NCBIRnor6.0
Rnor_6.0729,064,565 - 29,065,570NCBIRnor6.0
Rnor_5.0729,171,496 - 29,172,507UniSTSRnor5.0
Rnor_5.0729,171,496 - 29,172,501UniSTSRnor5.0
RGSC_v3.4725,192,021 - 25,193,026UniSTSRGSC3.4
RGSC_v3.4725,192,021 - 25,193,032UniSTSRGSC3.4
Celera720,068,588 - 20,069,599UniSTS
Celera720,068,588 - 20,069,593UniSTS
Cytogenetic Map7q13UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)71816950526029351Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:33
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000007305
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 53 37 16 37 8 11 64 35 38 10 8
Low 4 4 3 4 10 3 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000080939   ⟹   ENSRNOP00000072444
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl722,888,084 - 22,915,103 (-)Ensembl
Rnor_6.0 Ensembl729,043,916 - 29,070,928 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094926   ⟹   ENSRNOP00000084340
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl722,865,089 - 22,915,103 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097031   ⟹   ENSRNOP00000090264
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl722,863,027 - 22,915,103 (-)Ensembl
RefSeq Acc Id: NM_001007750   ⟹   NP_001007751
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2722,888,084 - 22,915,103 (-)NCBI
Rnor_6.0729,043,916 - 29,070,928 (-)NCBI
Rnor_5.0729,126,760 - 29,177,859 (-)NCBI
RGSC_v3.4725,171,417 - 25,198,384 (-)RGD
Celera720,042,608 - 20,074,943 (-)RGD
Sequence:
RefSeq Acc Id: XM_006241230   ⟹   XP_006241292
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2722,866,455 - 22,915,111 (-)NCBI
Rnor_6.0729,021,965 - 29,070,923 (-)NCBI
Rnor_5.0729,126,760 - 29,177,859 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241231   ⟹   XP_006241293
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2722,885,027 - 22,915,108 (-)NCBI
Rnor_6.0729,040,859 - 29,070,923 (-)NCBI
Rnor_5.0729,126,760 - 29,177,859 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079436   ⟹   XP_038935364
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2722,866,455 - 22,915,111 (-)NCBI
RefSeq Acc Id: XM_039079439   ⟹   XP_038935367
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2722,896,321 - 22,915,107 (-)NCBI
RefSeq Acc Id: XR_001838704
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2722,866,455 - 22,915,107 (-)NCBI
Rnor_6.0729,022,250 - 29,070,923 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001007751   ⟸   NM_001007750
- Sequence:
RefSeq Acc Id: XP_006241292   ⟸   XM_006241230
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006241293   ⟸   XM_006241231
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000072444   ⟸   ENSRNOT00000080939
RefSeq Acc Id: XP_038935364   ⟸   XM_039079436
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038935367   ⟸   XM_039079439
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000084340   ⟸   ENSRNOT00000094926
RefSeq Acc Id: ENSRNOP00000090264   ⟸   ENSRNOT00000097031

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66H21-F1-model_v2 AlphaFold Q66H21 1-398 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695128
Promoter ID:EPDNEW_R5653
Type:initiation region
Name:Chpt1_1
Description:choline phosphotransferase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0729,070,937 - 29,070,997EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359283 AgrOrtholog
BioCyc Gene G2FUF-34511 BioCyc
BioCyc Pathway PWY-3561 [choline biosynthesis III] BioCyc
  PWY-7782 [plasmalogen biosynthesis] BioCyc
  PWY-8053 [anandamide biosynthesis II] BioCyc
  PWY3O-450 [phosphatidylcholine biosynthesis I] BioCyc
Ensembl Genes ENSRNOG00000058271 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000072444 UniProtKB/Swiss-Prot
  ENSRNOP00000084340 ENTREZGENE
  ENSRNOP00000084340.1 UniProtKB/TrEMBL
  ENSRNOP00000090264 ENTREZGENE
  ENSRNOP00000090264.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000080939 UniProtKB/Swiss-Prot
  ENSRNOT00000094926 ENTREZGENE
  ENSRNOT00000094926.1 UniProtKB/TrEMBL
  ENSRNOT00000097031 ENTREZGENE
  ENSRNOT00000097031.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1760 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7133149 IMAGE-MGC_LOAD
InterPro CDP-OH_P_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CDP-OH_PTrfase_TM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CHOPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362866 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95241 IMAGE-MGC_LOAD
NCBI Gene 362866 ENTREZGENE
PANTHER PTHR10414 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CDP-OH_P_transf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Chpt1 PhenoGen
PIRSF CHOPT UniProtKB/Swiss-Prot
PROSITE CDP_ALCOHOL_P_TRANSF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZZB6_RAT UniProtKB/TrEMBL
  A0A8I6GI18_RAT UniProtKB/TrEMBL
  CHPT1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Chpt1  choline phosphotransferase 1  MGC95241  similar to choline phosphotransferase 1; cholinephosphotransferase 1 alpha; cholinephosphotransferase 1  Symbol and Name updated 1299863 APPROVED
2005-07-29 MGC95241  similar to choline phosphotransferase 1; cholinephosphotransferase 1 alpha; cholinephosphotransferase 1      Symbol and Name status set to provisional 70820 PROVISIONAL