Snora53 (small nucleolar RNA, H/ACA box 53) - Rat Genome Database

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Gene: Snora53 (small nucleolar RNA, H/ACA box 53) Rattus norvegicus
Analyze
Symbol: Snora53
Name: small nucleolar RNA, H/ACA box 53
RGD ID: 40960245
Description: INTERACTS WITH cisplatin (ortholog); cyclosporin A (ortholog); DDT (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: Gm24119; LOC120094011; predicted gene, 24119; small nucleolar RNA SNORA53
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8727,500,584 - 27,500,829 (-)NCBIGRCr8
mRatBN7.2725,613,357 - 25,613,602 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl725,613,357 - 25,613,602 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl731,818,021 - 31,818,266 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
cisplatin  (ISO)
cyclosporin A  (ISO)
DDT  (ISO)
versicolorin A  (ISO)

References

Genomics

Comparative Map Data
Snora53
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8727,500,584 - 27,500,829 (-)NCBIGRCr8
mRatBN7.2725,613,357 - 25,613,602 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl725,613,357 - 25,613,602 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl731,818,021 - 31,818,266 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map7q13NCBI
SNORA53
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381298,599,635 - 98,599,884 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1298,599,635 - 98,599,883 (+)EnsemblGRCh38hg38GRCh38
GRCh371298,993,413 - 98,993,662 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361297,517,544 - 97,517,793 (+)NCBINCBI36Build 36hg18NCBI36
Celera1298,658,126 - 98,658,375 (+)NCBICelera
Cytogenetic Map12q23.1NCBI
HuRef1296,054,562 - 96,054,811 (+)NCBIHuRef
CHM1_11298,958,403 - 98,958,652 (+)NCBICHM1_1
T2T-CHM13v2.01298,572,602 - 98,572,851 (+)NCBIT2T-CHM13v2.0
Gm24119
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391090,954,153 - 90,954,398 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1090,954,153 - 90,954,398 (-)EnsemblGRCm39 Ensembl
GRCm381091,118,291 - 91,118,536 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1091,118,291 - 91,118,536 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map10C2NCBI
LOC119869433
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1538,379,237 - 38,379,483 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01538,660,943 - 38,661,189 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11537,932,820 - 37,933,066 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01538,025,501 - 38,025,747 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01538,299,185 - 38,299,431 (+)NCBIUU_Cfam_GSD_1.0


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)71816950526029351Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005487704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000080363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl725,613,357 - 25,613,602 (-)Ensembl
RefSeq Acc Id: XR_005487704
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8727,500,584 - 27,500,829 (-)NCBI
mRatBN7.2725,613,357 - 25,613,602 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-34465 BioCyc
Ensembl Genes ENSRNOG00000056599 Ensembl
NCBI Gene LOC120094011 ENTREZGENE
PhenoGen Snora53 PhenoGen
RatGTEx ENSRNOG00000056599 RatGTEx
RNAcentral URS000072C11F RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-11-29 Snora53  small nucleolar RNA, H/ACA box 53  LOC120094011  small nucleolar RNA SNORA53  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120094011  small nucleolar RNA SNORA53  Gm24119  predicted gene, 24119  Data merged from RGD:15010374 737654 PROVISIONAL
2021-01-26 LOC120094011  small nucleolar RNA SNORA53      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Gm24119  predicted gene, 24119      Symbol and Name status set to provisional 45752 PROVISIONAL