Aia15 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Aia15 (Adjuvant induced arthritis QTL 15) Rattus norvegicus

Symbol: Aia15
Name: Adjuvant induced arthritis QTL 15
RGD ID: 2317059
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: right rear ankle joint diameter   (CMO:0002150)    
LOD Score: 2.46
P Value: Not Available
Variance: 7.4
Inheritance Type: dominant
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2717,004,598 - 62,004,598RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0755,072,862 - 69,399,731RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0724,590,450 - 69,590,450RGDRnor5.0
RGSC_v3.4721,202,126 - 66,202,126RGDRGSC3.4
Cross Type: intercross
Strains Crossed: F344/NCrl LEW/Crl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
F344/NCrl  (IEA)
LEW/Crl  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genetic dissection of granulomatous enterocolitis and arthritis in the intramural peptidoglycan-polysaccharide-treated rat model of IBD. Bleich A, etal., Inflamm Bowel Dis. 2009 Jun 12;15(12):1794-1802.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3799Syn3synapsin III71621605517808790Rat
1595959Ube2r2l2ubiquitin-conjugating enzyme E2R 2 like 271704573717118072Rat
41064446Mex3a-ps4mex-3 RNA binding family member A, pseudogene 471714948917151610Rat
9282079Smokl8sperm motility kinase like 871717284317196709Rat
40992238Smokwl7sperm motility kinase W like 771720533917208133Rat
41295631Ddx21-ps7DExD-box helicase 21, pseudogene 771730847917311167Rat
1564409Smokwl2sperm motility kinase W like 271731178517330229Rat
3865Timp3TIMP metallopeptidase inhibitor 371752082717571850Rat
1305648Fbxo7F-box protein 771780922417837549Rat
41059088LOC120093911U6 spliceosomal RNA71781996217820065Rat
1311686BpifcBPI fold containing family C71784878717905993Rat
1303261RtcbRNA 2',3'-cyclic phosphate and 5'-OH ligase71790766817927136Rat
1307533Ascl4achaete-scute family bHLH transcription factor 471794097217943215Rat
1563124Rps20l2ribosomal protein S20 like 271794654617947198Rat
619929Prdm4PR/SET domain 471795383217980489Rat
1310705Pwp1PWP1 homolog, endonuclein71798273017998728Rat
1308647Abtb3ankyrin repeat and BTB domain containing 371803515118310718Rat
1595800Ybx1-ps21Y box binding protein 1, pseudogene 2171820995118211267Rat
735083Cry1cryptochrome circadian regulator 171852982318594092Rat
41085374LOC120093541sialic acid synthase-like71854432718548333Rat
1311836Mterf2mitochondrial transcription termination factor 271859820218608278Rat
1563325Tmem263transmembrane protein 26371861015118628311Rat
1308978Fhl4four and a half LIM domains 471862860818633411Rat
11394794LOC108351431uncharacterized LOC10835143171867153318677404Rat
11449646Sgo1-ps1shugoshin 1, pseudogene 171868569318722402Rat
631419Ric8bRIC8 guanine nucleotide exchange factor B71874671618843264Rat
1562092Rfx4regulatory factor X471885306519015378Rat
1565311Polr3bRNA polymerase III subunit B71903917919142450Rat
1307494Tcp11l2t-complex 11 like 271915024119185135Rat
7665261LOC102552828uncharacterized LOC10255282871918484119187489Rat
1311989Ckap4cytoskeleton-associated protein 471923081419238914Rat
41301050LOC120093542uncharacterized LOC12009354271932825319329743Rat
1309956Nuak1NUAK family kinase 171933003419401918Rat
6495477LOC100910949uncharacterized LOC10091094971954870719552585Rat
41343476LOC120093543uncharacterized LOC12009354371955161119637656Rat
41126123LOC120093544uncharacterized LOC12009354471985993719864729Rat
41032392Rps18-ps5ribosomal protein S18, pseudogene 571988560519891826Rat
41240486LOC120093843uncharacterized LOC12009384371994539119956511Rat
41051998LOC120093844uncharacterized LOC12009384471998196019984040Rat
6495714C7h12orf75similar to human chromosome 12 open reading frame 7572001510220058448Rat
7555453LOC102549680uncharacterized LOC10254968072005818020067999Rat
1563028Appl2adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 272013524820184757Rat
1309995Washc4WASH complex subunit 472018790520240228Rat
1561079Itm2a-ps1integral membrane protein 2A, pseudogene 172024966020251049Rat
1309458Aldh1l2aldehyde dehydrogenase 1 family, member L272025424620305793Rat
4888556Mir3561microRNA 356172030754120307649Rat
1563365Nopchap1NOP protein chaperone 172035362620359685Rat
41036455LOC12009376640S ribosomal protein S8-like72036657220374077Rat
1307292Slc41a2solute carrier family 41 member 272038371420491178Rat
7612429LOC102550067uncharacterized LOC10255006772039234920394703Rat
1308400Chst11carbohydrate sulfotransferase 1172052453520743008Rat
41204714LOC120093545uncharacterized LOC12009354572053702120538723Rat
41216819LOC120093923U6 spliceosomal RNA72056520020565301Rat
61959Txnrd1thioredoxin reductase 172083004220914990Rat
1597206Eid3EP300 interacting inhibitor of differentiation 372086007320861395Rat
11513165LOC108351425uncharacterized LOC10835142572086842920891059Rat
9163865LOC103692815uncharacterized LOC10369281572094498320950630Rat
3172Nfybnuclear transcription factor Y subunit beta72096498820980569Rat
1307385Hcfc2host cell factor C272098398621019826Rat
1560432Glt8d2glycosyltransferase 8 domain containing 272102953421081081Rat
620959Tdgthymine-DNA glycosylase72107785321097617Rat
1593359Uqcc6ubiquinol-cytochrome c reductase complex assembly factor 672110472921108135Rat
1310482Hsp90b1heat shock protein 90 beta family member 172111043121124762Rat
1302940Ttc41tetratricopeptide repeat domain 4172112490921188191Rat
1593358Nt5dc35'-nucleotidase domain containing 372119055421247374Rat
628822Stab2stabilin 272124942621433051Rat
41177446LOC120093791uncharacterized LOC12009379172124958221251176Rat
7498642Adnp2l1ADNP homeobox 2 like 172131699121324739Rat
41019105Rpl7a-ps27ribosomal protein L7a, pseudogene 2772142335421424562Rat
1560034C7h12orf42similar to human chromosome 12 open reading frame 4272145518221653232Rat
11355398LOC108351426uncharacterized LOC10835142672153562821539576Rat
11491535LOC108351427uncharacterized LOC10835142772180708721832716Rat
41339453LOC120093792uncharacterized LOC12009379272183891321839416Rat
71010Ascl1achaete-scute family bHLH transcription factor 172190313621906003Rat
3248Pahphenylalanine hydroxylase72193317921998134Rat
2323080Mesp2-ps1mesoderm posterior bHLH transcription factor 2, pseudogene 172199824921999639Rat
41083865LOC120093845uncharacterized LOC12009384572205417522060706Rat
2868Igf1insulin-like growth factor 172228289522361972Rat
40951180Ywhag-ps6tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma, pseudogene 672250088822510407Rat
2314264ParpbpPARP1 binding protein72251142722580834Rat
3358Pmchpro-melanin-concentrating hormone72251193422513250Rat
1307774Nup37nucleoporin 3772255654422609622Rat
40971002LOC120094020U6atac minor spliceosomal RNA72259076622590886Rat
41346602LOC120093767uncharacterized LOC12009376772261161322618714Rat
1563761Washc3WASH complex subunit 372262107822665550Rat
41192836Gapdh-ps32Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 3272267030622673868Rat
41022142Prob1-ps1proline-rich basic protein 1, pseudogene 172268504822707006Rat
1598133Dram1DNA-damage regulated autophagy modulator 172274279422776888Rat
1564821GnptabN-acetylglucosamine-1-phosphate transferase subunits alpha and beta72280050222866336Rat
1359283Chpt1choline phosphotransferase 172286645522915111Rat
3795Sycp3synaptonemal complex protein 372287405522888512Rat
7602377LOC102554140uncharacterized LOC10255414072291524422918204Rat
735102Mybpc1myosin binding protein C172293035023015981Rat
41305107LOC120093549uncharacterized LOC12009354972301205723013510Rat
41153506Gapdh-ps33Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 3372305458623055516Rat
1306272SpicSpi-C transcription factor72306981523077517Rat
1561102Rps12l4ribosomal protein S12-like 472311884523119632Rat
621326Arl1ARF like GTPase 172312000423131173Rat
1560606Utp20UTP20 small subunit processome component72313463023215639Rat
1564146Slc5a8solute carrier family 5 member 872327289123313811Rat
1310252Ano4anoctamin 472332901523738423Rat
6501070LOC100909955peptidyl-prolyl cis-trans isomerase A-like72374357523753559Rat
9187595Rpl9l2ribosomal protein L9 like 272379291723793629Rat
1594151Gas2l3growth arrest-specific 2 like 372380357823836816Rat
628831Nr1h4nuclear receptor subfamily 1, group H, member 472384612223942085Rat
41200052LOC120093931U7 small nuclear RNA72386490423864965Rat
7641052Anxa7-ps2Annexin A7, pseudogene 272389444723896632Rat
628870Slc17a8solute carrier family 17 member 872399421224049498Rat
1305665Scyl2SCY1 like pseudokinase 272406440424117338Rat
1304609Actr6actin related protein 672415025024171057Rat
1594520Bltp3bbridge-like lipid transfer protein family member 3B72418163524261720Rat
1565556Anks1bankyrin repeat and sterile alpha motif domain containing 1B72431333925479307Rat
41008610LOC120094026U2 spliceosomal RNA72460434224604529Rat
41038583LOC120093796uncharacterized LOC12009379672480240224830026Rat
11495246LOC108351597uncharacterized LOC10835159772490393824915896Rat
41277470LOC120093926U6 spliceosomal RNA72494002324940117Rat
41155466LOC120093797uncharacterized LOC12009379772499036524996489Rat
41319396LOC120093795uncharacterized LOC12009379572507314925103124Rat
41018033Snrpn-ps3small nuclear ribonucleoprotein polypeptide N, pseudogene 372525325625253962Rat
40972371Ndufa2-ps4NADH:ubiquinone oxidoreductase subunit A2, pseudogene 472539004525390816Rat
620575Apaf1apoptotic peptidase activating factor 172549414325579540Rat
1305457IkbipIKBKB interacting protein72557986525598548Rat
70986Slc25a3solute carrier family 25 member 372561193725619401Rat
40960245Snora53small nucleolar RNA, H/ACA box 5372561335725613602Rat
3875Tmpothymopoietin72564275225667756Rat
9421619LOC103692820cytochrome b-c1 complex subunit 7 pseudogene72566104525662232Rat
11464810Trnaw-cca1transfer RNA tryptophan (anticodon CCA) 172567834125678412Rat
11462537Trnad-guc1transfer RNA aspartic acid (anticodon GUC) 172567902625679097Rat
1589769Tpgs2-ps1tubulin polyglutamylase complex subunit 2, pseudogene 172573055625731426Rat
1589768Gapdh-ps98Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 9872589535225915853Rat
41248997LOC120093956small nucleolar RNA SNORA2472605931726059438Rat
1565429Rps19-ps6ribosomal protein S19, pseudogene 672639470826395173Rat
7515236LOC102548260uncharacterized LOC10254826072661092526704322Rat
2325347Mir135amicroRNA 135a72661199026612089Rat
41254183LOC120093847uncharacterized LOC12009384772693764326943644Rat
1307750Nedd1NEDD1 gamma-tubulin ring complex targeting factor72723305027274486Rat
41386114LOC120094015small nucleolar RNA SNORA7972723688927237031Rat
1565866Cfap54cilia and flagella associated protein 5472731649827601630Rat
41364186LOC120093552uncharacterized LOC12009355272734776827351084Rat
1565593Cdk17cyclin-dependent kinase 1772768389027765814Rat
1307764Elk3ETS transcription factor ELK372776858227831088Rat
7727462LOC102548950uncharacterized LOC10254895072783371927839466Rat
40991469LOC120093554uncharacterized LOC12009355472792595927936004Rat
41002557Psmb3-ps1proteasome 20S subunit beta 3, pseudogene 172795525027957768Rat
11452399Trnad-guc2transfer RNA aspartic acid (anticodon GUC) 272796938427969455Rat
1311333Lta4hleukotriene A4 hydrolase72796979628001600Rat
7620450LOC102553539uncharacterized LOC10255353972799774428006748Rat
68363Halhistidine ammonia lyase72800744928037701Rat
1308879Amdhd1amidohydrolase domain containing 172804392328059156Rat
1564046Ccdc38coiled-coil domain containing 3872805588328129938Rat
1588229Snrpfsmall nuclear ribonucleoprotein polypeptide F72813042728137129Rat
1565947Ntn4netrin 472818661128300390Rat
2324495Rps21-ps5ribosomal protein S21, pseudogene 572826513528265549Rat
9159198LOC103692824NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial pseudogene72835176828352101Rat
1308216Usp44ubiquitin specific peptidase 4472836416928412039Rat
70995Metap2methionyl aminopeptidase 272841242928440458Rat
1359117Veztvezatin, adherens junctions transmembrane protein72851221428597429Rat
2325619Mir331microRNA 33172852739028527485Rat
41302345LOC120093556uncharacterized LOC12009355672854394228546950Rat
1565609Fgd6FYVE, RhoGEF and PH domain containing 672859760928712908Rat
3200Nr2c1nuclear receptor subfamily 2, group C, member 172871534728768624Rat
1311462Ndufa12NADH:ubiquinone oxidoreductase subunit A1272877133028798316Rat
1307241Tmcc3transmembrane and coiled-coil domain family 372889397229171935Rat
7570684LOC102554269uncharacterized LOC10255426972901693629030555Rat
41240014LOC12009355760S ribosomal protein L31-like72917831129180418Rat
41265557LOC120093558uncharacterized LOC12009355872924232229247760Rat
6488367Atp5mf-ps3ATP synthase membrane subunit f, pseudogene 372925148529251828Rat
10395318Cep83oscentrosomal protein 83, opposite strand72926076729280248Rat
1359593Cep83centrosomal protein 8372928035829389574Rat
41092649LOC120093560uncharacterized LOC12009356072937862429382893Rat
1307420Plxnc1plexin C172939003829543985Rat
41072814LOC120093559uncharacterized LOC12009355972954374029548701Rat
11501359LOC108351432uncharacterized LOC10835143272959175729593257Rat
7507440Rpl36a-ps18ribosomal protein L36A, pseudogene 1872969502029709955Rat
9391515Rpl39-ps13ribosomal protein L39, pseudogene 1372983493629835288Rat
1311010CraddCASP2 and RIPK1 domain containing adaptor with death domain72994024029952907Rat
41309000Dnajc30-ps1DnaJ heat shock protein family (Hsp40) member C30, pseudogene 172996842929972525Rat
69273Socs2suppressor of cytokine signaling 273000636030045161Rat
1304915Mrpl42mitochondrial ribosomal protein L4273011797730141757Rat
7693286LOC102556774uncharacterized LOC10255677473014966130153451Rat
621096Ube2nubiquitin-conjugating enzyme E2N73015433030184373Rat
621355Nudt4nudix hydrolase 473018810030204615Rat
7588949LOC102546610uncharacterized LOC10254661073020661730209678Rat
1565358Ndufa13-ps1NADH:ubiquinone oxidoreductase subunit A13, pseudogene 173037015630370625Rat
7751615LOC102546992uncharacterized LOC10254699273042347630432798Rat
6488764LOC100912143uncharacterized LOC10091214373042696230453658Rat
1310167Eea1early endosome antigen 173055468630722186Rat
41286759LOC120093990small nucleolar RNA SNORA1773055782230557964Rat
7665469Rpl6-ps8ribosomal protein L6, pseudogene 873067408830677692Rat
7576392Plekhg7pleckstrin homology and RhoGEF domain containing G773072795230805866Rat
41097296Ewsr1-ps4EWS RNA-binding protein 473081892130820102Rat
11383424Rpl15-ps4ribosomal protein L15, pseudogene 473095126730951881Rat
41175614Gapdh-ps34Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 3473118736731188483Rat
41106785LOC120094036U2 spliceosomal RNA73119009831190164Rat
7552031LOC102550725uncharacterized LOC10255072573133887031341029Rat
2224Btg1BTG anti-proliferation factor 173134139131343649Rat
11386103LOC108351618glyceraldehyde-3-phosphate dehydrogenase pseudogene73139002831391014Rat
40933449U2l2U2 spliceosomal RNA like 273147611531476221Rat
41165622Taldo1-ps2transaldolase 1, pseudogene 273150690531508727Rat
41289757LOC120093564uncharacterized LOC12009356473163413431640133Rat
11409121LOC108351437glyceraldehyde-3-phosphate dehydrogenase pseudogene73164368331650688Rat
41049173U2l1U2 spliceosomal RNA like 173194920631949396Rat
2320737Cwc15-ps2CWC15 spliceosome-associated protein, pseudogene 273199612932000031Rat
11462120LOC10835161960S ribosomal protein L13 pseudogene73205808732058762Rat
41373641LOC120093849uncharacterized LOC12009384973211987632128347Rat
41119690LOC120093566uncharacterized LOC12009356673223801332280947Rat
61895Dcndecorin73228125232321291Rat
620984Lumlumican73235899032365794Rat
1305816Kerakeratocan73239738232404837Rat
1305904Epycepiphycan73243662032474326Rat
1560042Ccer1coiled-coil glutamate-rich protein 173248506332521296Rat
40976615LOC120093993small nucleolar RNA SNORA1773252924032529384Rat
40938680LOC120093567uncharacterized LOC12009356773254061432737507Rat
1597146Ppia-ps12peptidylprolyl isomerase A, pseudogene 1273355950233559989Rat
621303Atp2b1ATPase plasma membrane Ca2+ transporting 173373559533845226Rat
41197857Gng5-ps2G protein subunit gamma 5, pseudogene 273390583133906268Rat
2323942Poc1bPOC1 centriolar protein B73392411234025908Rat
1564589Galnt4polypeptide N-acetylgalactosaminyltransferase 473392522933927770Rat
70978Dusp6dual specificity phosphatase 673409284834097186Rat
41081941LOC120093569uncharacterized LOC12009356973410728734116573Rat
1595795Tuba1b-ps12tubulin, alpha 1B, pseudogene 1273417559134176932Rat
1595794Eef1a1-ps3eukaryotic translation elongation factor 1 alpha 1, pseudogene 373419847934205120Rat
41291036LOC120093570uncharacterized LOC12009357073430133934326597Rat
1565753Csl1citrate synthase like 173458393234704321Rat
41212204Cs-ps1citrate synthase, pseudogene 173459897834601654Rat
6498798LOC100910453voltage-dependent anion-selective channel protein 1-like73484100034841375Rat
3086KitlgKIT ligand73489607534977215Rat
41175762LOC120093572uncharacterized LOC12009357273498256934988018Rat
11378564LOC108351620glyceraldehyde-3-phosphate dehydrogenase pseudogene73503085535032582Rat
41395832LOC120093971small nucleolar RNA SNORA4873510229035102431Rat
1306351Tmtc3transmembrane O-mannosyltransferase targeting cadherins 373526488635310010Rat
1311640Cep290centrosomal protein 29073531007135399388Rat
41325648Trnap-ggg7transfer RNA proline (anticodon GGG) 773534918335349263Rat
1307947Rlig1RNA 5'-phosphate and 3'-OH ligase 173539687635408633Rat
1563125C7h12orf50similar to human chromosome 12 open reading frame 5073540614735443324Rat
2323562Rps13-ps9ribosomal protein S13, pseudogene 973548047435480916Rat
41251481LOC120093573uncharacterized LOC12009357373655304036571045Rat
1307871Mgat4cMGAT4 family, member C73670956437485810Rat
40962455Rsrc1-ps1arginine and serine rich coiled-coil 1, pseudogene 173706576737071635Rat
6498316LOC100910482uncharacterized LOC10091048273752081437542239Rat
621612Ntsneurotensin73756494437574350Rat
621329Rassf9Ras association domain family member 973759972037631553Rat
9445936LOC103690238uncharacterized LOC10369023873782986337834663Rat
41365425LOC120093575uncharacterized LOC12009357573811435138131730Rat
2273Alx1ALX homeobox 173815762638177220Rat
41273020LOC120093145leucine-rich repeat and IQ domain-containing protein 1-like73819159538317201Rat
41128408LOC120094005small nucleolar RNA SNORA1773828218338282302Rat
1564903Lrriq1leucine-rich repeats and IQ motif containing 173831725938409885Rat
628664Slc6a15solute carrier family 6 member 1573855305538607239Rat
41078854LOC120093967small nucleolar RNA SNORA4873856412838564271Rat
41254759LOC120093576uncharacterized LOC12009357673856646538568470Rat
41327720LOC120093901U6 spliceosomal RNA73865725238657356Rat
41028082LOC120093907U6 spliceosomal RNA73909235839092466Rat
41337737LOC120093577uncharacterized LOC12009357773951493539526972Rat
41032554Banf1-ps4BAF nuclear assembly factor 1, pseudogene 474027746640277911Rat
41082719LOC120094000small nucleolar RNA SNORA1774034457540344707Rat
1309848Tmtc2transmembrane O-mannosyltransferase targeting cadherins 274039237740806685Rat
40960293LOC120093898U6 spliceosomal RNA74056870340568801Rat
40957379LOC120093578uncharacterized LOC12009357874076494240789988Rat
1310270Mettl25methyltransferase like 2574106227641143056Rat
1311912Ccdc59coiled-coil domain containing 5974114276041149143Rat
1305021Ppfia2PTPRF interacting protein alpha 274176571642240104Rat
1307051Acss3acyl-CoA synthetase short-chain family member 374224126142450209Rat
9417884LOC103692846sulfotransferase 1C2 pseudogene74225480842256182Rat
40969194LOC120094001small nucleolar RNA SNORA1774245986042459990Rat
621256Lin7alin-7 homolog A, crumbs cell polarity complex component74258670442742609Rat
41152665LOC120094046U5 spliceosomal RNA74265756642657674Rat
1308322Myf5myogenic factor 574280294642806177Rat
3134Myf6myogenic factor 674281300842814852Rat
41050361LOC120093580uncharacterized LOC12009358074281525443016555Rat
620779Ptprqprotein tyrosine phosphatase, receptor type, Q74283445543016807Rat
1589018Otoglotogelin-like74306580043211400Rat
620013Ppp1r12aprotein phosphatase 1, regulatory subunit 12A74348280843593689Rat
69065Pawrpro-apoptotic WT1 regulator74364502843725033Rat
41023123Rpl26-ps10ribosomal protein L26, pseudogene 1074370389943716963Rat
41368650LOC120093977small nucleolar RNA SNORA4874371172743711871Rat
41136792LOC120093582uncharacterized LOC12009358274374690243769702Rat
40962771LOC120093799uncharacterized LOC12009379974380844543814458Rat
3803Syt1synaptotagmin 174381320444358020Rat
7658882LOC102547595uncharacterized LOC10254759574397609244001594Rat
9447173Brcc3dcBRCA1/BRCA2-containing complex, subunit 3, domain containing74401488944016646Rat
6493321Rpl31-ps2ribosomal protein L31, pseudogene 274430012344300616Rat
41207487LOC120093800uncharacterized LOC12009380074435876544363310Rat
1594372Hdac1-ps6Histone deacetylase 1, pseudogene 674463472444645145Rat
1306259Nav3neuron navigator 374505220645840471Rat
41236746LOC120093801uncharacterized LOC12009380174505690445073781Rat
1310258E2f7E2F transcription factor 774615053346192739Rat
41210402LOC120093928U6 spliceosomal RNA74633498146335086Rat
61950Csrp2cysteine and glycine-rich protein 274634910946367743Rat
1595790Zdhhc17zinc finger DHHC-type palmitoyltransferase 1774636996346433691Rat
41121043LOC120093583uncharacterized LOC12009358374642615046433558Rat
1588873Pes1-ps4pescadillo ribosomal biogenesis factor 1, pseudogene 474647604946477682Rat
41017733LOC120093585uncharacterized LOC12009358574655092746568690Rat
41054798LOC120093925U6 spliceosomal RNA74655878746558886Rat
2319089Spdl1-ps1spindle apparatus coiled-coil protein 1, pseudogene 174658565446590216Rat
1561474Osbpl8oxysterol binding protein-like 874659694446749888Rat
41366535LOC120093586uncharacterized LOC12009358674667307546678086Rat
1596694Eif5-ps8eukaryotic translation initiation factor 5, pseudogene 874672305846724664Rat
1560748Bbs10Bardet-Biedl syndrome 1074675102846754132Rat
7721657LOC102548498uncharacterized LOC10254849874688330346907932Rat
71094Nap1l1nucleosome assembly protein 1-like 174693327846957853Rat
41211178LOC120093965small nucleolar RNA SNORA4874694066446940806Rat
3836Phlda1pleckstrin homology-like domain, family A, member 174696743346969637Rat
7728983LOC102548561uncharacterized LOC10254856174720865647220235Rat
11427685LOC108351449uncharacterized LOC10835144974732740847337493Rat
41375281LOC120093587uncharacterized LOC12009358774734474247363207Rat
11431842LOC108351450uncharacterized LOC10835145074744578247461331Rat
1306183Krr1KRR1, small subunit processome component homolog74747555747486996Rat
1305978Glipr1GLI pathogenesis-related 174748734247498974Rat
1310205Glipr1l2GLIPR1 like 274753300947546737Rat
1563000Glipr1l1GLIPR1 like 174755063747577611Rat
1309826Caps2calcyphosine 274758063647641598Rat
2318888Rpl27a-ps2ribosomal protein L27a, pseudogene 274764285247675130Rat
628829Kcnc2potassium voltage-gated channel subfamily C member 274770003547883979Rat
41098017LOC120093919U6 spliceosomal RNA74817766848177762Rat
2301984Atxn7l3bataxin 7-like 3B74832245148325975Rat
7709076LOC102546573uncharacterized LOC10254657374841026548417520Rat
6486766Tuba1b-ps5tubulin, alpha 1B, pseudogene 574856449248565895Rat
11414169LOC108351454uncharacterized LOC10835145474941918049434582Rat
1585306Arf1-ps4ADP-ribosylation factor 1, pseudogene 474972842149728965Rat
728895Trhdethyrotropin-releasing hormone degrading enzyme74994327150350613Rat
41180745LOC120093589uncharacterized LOC12009358975035015950370342Rat
41120670Trnat-agu25transfer RNA threonine (anticodon AGU) 2575036331750363395Rat
7514887LOC102549403uncharacterized LOC10254940375040092250423295Rat
41208259LOC120093590uncharacterized LOC12009359075043309750440570Rat
1595789Btf3-ps10basic transcription factor 3, pseudogene 1075054446450546990Rat
631332Tph2tryptophan hydroxylase 275068569450789424Rat
9406127LOC103692856nuclear cap-binding protein subunit 2 pseudogene75073889650747463Rat
1307920Tbc1d15TBC1 domain family, member 1575080455350860272Rat
1303150Rab21RAB21, member RAS oncogene family75090405050928890Rat
735209Tmem19transmembrane protein 1975095888450985601Rat
1593643Thap2THAP domain containing 275099291251007582Rat
1306287Zfc3h1zinc finger, C3H1-type containing75100825151064666Rat
41089710LOC120093959small nucleolar RNA SNORA4475101910851019230Rat
11410267Hnrnpa1-ps42heterogeneous nuclear ribonucleoprotein A1, pseudogene 4275104580151047650Rat
41346314LOC120093850MICOS complex subunit Mic10-like75107619551079347Rat
1307733Lgr5leucine rich repeat containing G protein coupled receptor 575108705951221882Rat
41214652Trnap-agg57transfer RNA proline (anticodon AGG) 5775110298851103061Rat
41084931LOC12009359139S ribosomal protein L50, mitochondrial-like75119307151213603Rat
621783Tspan8tetraspanin 875144494651479360Rat
41113964LOC120093938U7 small nuclear RNA75147428051474337Rat
7677619LOC102551386uncharacterized LOC10255138675149007851494499Rat
7638646LOC102551482uncharacterized LOC10255148275150810351519060Rat
41120201LOC120093592uncharacterized LOC12009359275152912251541332Rat
620780Ptprrprotein tyrosine phosphatase, receptor type, R75166259551929605Rat
1596425Taf7l-ps1TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 175176325951764401Rat
41355956LOC120093594uncharacterized LOC12009359475186252251881220Rat
41067918LOC120093595uncharacterized LOC12009359575189986351919776Rat
1305922Ptprbprotein tyrosine phosphatase, receptor type, B75195337552034751Rat
620728Kcnmb4potassium calcium-activated channel subfamily M regulatory beta subunit 475206614552119098Rat
1311672Cnot2CCR4-NOT transcription complex, subunit 275213044552222338Rat
2318367Pdia4-ps1protein disulfide isomerase family A, member 4, pseudogene 175224120052242264Rat
40972102LOC120093596uncharacterized LOC12009359675231948552323305Rat
1564883Rpl12a-ps1ribosomal protein L12, pseudogene 175236672652367448Rat
1562127Myrflmyelin regulatory factor-like75240332452519907Rat
1582946H3f3a-ps5H3.3 histone A, pseudogene 575252344852526265Rat
620650Rab3ipRAB3A interacting protein75253146152575295Rat
1305439Best3bestrophin 375258682452656776Rat
41120395LOC120093598uncharacterized LOC12009359875263629252640179Rat
1597472Rtcb-ps1RNA 2',3'-cyclic phosphate and 5'-OH ligase, pseudogene 175266985552671671Rat
41354498LOC120093599uncharacterized LOC12009359975267695752685404Rat
1307358Lrrc10leucine-rich repeat-containing 1075268697252688369Rat
1359143Cct2chaperonin containing TCP1 subunit 275269272552705478Rat
1308201Frs2fibroblast growth factor receptor substrate 275271125552792738Rat
41286435LOC120093600uncharacterized LOC12009360075279287152805208Rat
1597418Mrpl47-ps1mitochondrial ribosomal protein L47, pseudogene 175284067952841539Rat
1305741Yeats4YEATS domain containing 475285831352865454Rat
1306474RGD1306474similar to RIKEN cDNA 9530003J2375287584252880716Rat
1593616Lyc2lysozyme C type 275288710452894447Rat
3026Lyz2lysozyme 275290681052912154Rat
41016237LOC120093975small nucleolar RNA SNORA4875293013352930274Rat
1304640Cpsf6cleavage and polyadenylation specific factor 675295658953001783Rat
41127999LOC120093601uncharacterized LOC12009360175303123153044412Rat
41061317LOC120093899U6 spliceosomal RNA75312126853121371Rat
41163580LOC120093602uncharacterized LOC12009360275315392053159148Rat
7710554LOC102550217uncharacterized LOC10255021775316179253172907Rat
1310532Cpmcarboxypeptidase M75322564753286220Rat
41397689LOC120093603uncharacterized LOC12009360375322943553235643Rat
1305332Mdm2MDM2 proto-oncogene75329066053315205Rat
11428166LOC108351461uncharacterized LOC10835146175333234453341706Rat
1564876Slc35e3solute carrier family 35, member E375333709153350152Rat
621160Nup107nucleoporin 10775335374053398345Rat
620577Rap1bRAP1B, member of RAS oncogene family75342303953456349Rat
7733495Ndufa13-ps3NADH:ubiquinone oxidoreductase subunit A13, pseudogene 375344091753441370Rat
41116110Sfr1-ps1SWI5-dependent homologous recombination repair protein 1, pseudogene 175345838153461341Rat
41166350LOC120093606uncharacterized LOC12009360675346869753474503Rat
41103456LOC120093607uncharacterized LOC12009360775349040553495755Rat
7725676LOC102550659uncharacterized LOC10255065975351829153525492Rat
41135449LOC120093865basic proline-rich protein-like75354472253546293Rat
1306282Tmem186l1transmembrane protein 186l175355337853570587Rat
11389551LOC108351462uncharacterized LOC10835146275361951753629569Rat
11429701LOC108351463uncharacterized LOC10835146375367989253695346Rat
7718419LOC102551023uncharacterized LOC10255102375371786953729789Rat
1561092Mdm1Mdm1 nuclear protein75372960353766034Rat
1561292Il22interleukin 2275380120653805673Rat
9117410LOC103692876small ubiquitin-related modifier 2 pseudogene75387473853875151Rat
2866Ifnginterferon gamma75390333953907375Rat
41268730LOC120093851uncharacterized LOC12009385175420826754212875Rat
1312039Dyrk2dual specificity tyrosine phosphorylation regulated kinase 275434872454381363Rat
620479Cand1cullin-associated and neddylation-dissociated 175468111454719002Rat
1594497Rps12-ps4ribosomal protein S12, pseudogene75482751854827910Rat
2324060Uqcr11l1ubiquinol-cytochrome c reductase, complex III subunit XI like 175487514454875314Rat
41394217LOC120093612uncharacterized LOC12009361275488826954901551Rat
621667Grip1glutamate receptor interacting protein 175493485655592274Rat
41052312LOC120093802uncharacterized LOC12009380275535615855359497Rat
1560103HelbDNA helicase B75558851055615979Rat
1308846Irak3interleukin-1 receptor-associated kinase 375565394955714371Rat
735173Tmbim4transmembrane BAX inhibitor motif containing 475571869055733277Rat
1308261LlphLLP homolog, long-term synaptic facilitation factor75573531755740341Rat
620617Hmga2high mobility group AT-hook 275587714555998813Rat
41181996LOC120093613uncharacterized LOC12009361375591315555941962Rat
7677968LOC102549309uncharacterized LOC10254930975596419955977306Rat
41260607LOC120093614uncharacterized LOC12009361475597827655988331Rat
7678454LOC102547249uncharacterized LOC10254724975599824456005560Rat
11502995LOC108351467uncharacterized LOC10835146775608042056091186Rat
41374847LOC120093989small nucleolar RNA SNORA1775611925456119374Rat
7542471LOC102547506uncharacterized LOC10254750675612579456140736Rat
41319368LOC120093615uncharacterized LOC12009361575617003956172387Rat
41150806LOC120093616uncharacterized LOC12009361675617856356194792Rat
1596851Msrb3methionine sulfoxide reductase B375626098556426004Rat
1562607Styx-ps1serine/threonine/tyrosine interacting protein, pseudogene 175636338956364593Rat
1596822Lemd3LEM domain containing 375641505356499047Rat
41235016LOC120093617uncharacterized LOC12009361775651237956527620Rat
619774Wif1Wnt inhibitory factor 175654806056618364Rat
1561871Rps10-ps22ribosomal protein S10, pseudogene 2275677264656773237Rat
1305255Tbc1d30TBC1 domain family, member 3075677957056869092Rat
40974068LOC120093619uncharacterized LOC12009361975686911656871824Rat
1305877Gnsglucosamine (N-acetyl)-6-sulfatase75688914856923173Rat
1311450Rassf3Ras association domain family member 375693588857000554Rat
1588588Tbk1TANK-binding kinase 175707783057110868Rat
1305562Xpotexportin for tRNA75711153657152013Rat
2322266Ghitm-ps2growth hormone inducible transmembrane protein, pseudogene 275715622057157537Rat
1561648C7h12orf56similar to human chromosome 12 open reading frame 5675717040657220930Rat
1565498Kics2KICSTOR subunit 275728421357299070Rat
1566260Srgap1SLIT-ROBO Rho GTPase activating protein 175732953257594681Rat
40973776LOC120093620uncharacterized LOC12009362075733351357348361Rat
40943516LOC120093867sentrin-specific protease 2-like75760698957608641Rat
41349511LOC120093868sentrin-specific protease 2-like75767292357674377Rat
41179485LOC120093869sentrin-specific protease 2-like75770148357703091Rat
41225140LOC120093621sentrin-specific protease 2-like75774299757743814Rat
7548711Tmed2-ps1transmembrane p24 trafficking protein 2, pseudogene 175776767257769695Rat
1309356Rxylt1ribitol xylosyltransferase 175777084157782695Rat
1594496Vps54-ps1vacuolar protein sorting 54 homolog (S. cerevisiae), pseudogene 175783223557834588Rat
2185Avpr1aarginine vasopressin receptor 1A75811430658118230Rat
1309528Ppm1hprotein phosphatase, Mg2+/Mn2+ dependent, 1H75833866158599547Rat
2325604Mirlet7imicroRNA let-7i75864248558642569Rat
1308808Mon2MON2 homolog, regulator of endosome-to-Golgi trafficking75864937858728102Rat
11466148Snurfl1SNRPN upstream open reading frame like 175871471358716587Rat
628795Usp15ubiquitin specific peptidase 1575875671458848778Rat
9685075Snora19small nucleolar RNA, H/ACA box 1975878050358780571Rat
1589429Tafa2TAFA chemokine like family member 275894259859418640Rat
40952871LOC120093870basic proline-rich protein-like75944207559443292Rat
41098039LOC120093624uncharacterized LOC12009362475952784359540971Rat
41286787Crb1-ps3crumbs cell polarity complex component 1, pseudogene 375958331659598561Rat
41375035LOC120093987small nucleolar RNA SNORA1775967884959678980Rat
40939206Ftl1-ps8ferritin light chain 1, pseudogene 876082544560837640Rat
7695057LOC102552186uncharacterized LOC10255218676097594361088913Rat
3691Slc16a7solute carrier family 16 member 776104366761211547Rat
7654942LOC102552637uncharacterized LOC10255263776144449561496656Rat
7628604LOC102552423uncharacterized LOC10255242376149810261533554Rat
1561255Lrig3leucine-rich repeats and immunoglobulin-like domains 376181631361866275Rat
40991943LOC120093626uncharacterized LOC12009362676193670861940112Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10221D7Arb1775811322458113450Ratregion
10764D7Mit2320372228208722282284Ratregion
10880D7Mgh2212475288832652888450Ratregion
33915D14Mit1424671711623617116475Ratregion
34051D7Mit2824872673740126737633Ratregion
34055D7Mit2214473320007033200212Ratregion
34078D7Mgh1414872250569522505844Ratregion
34166D7Mgh1513571903280719032945Ratregion
34634D4Mgh538375811434658114729Ratregion
33664D7Mit725973131025731310525Ratregion
36099D7Rat2515775679321056793354Ratregion
36141D7Rat4916072226618522266345Ratregion
36263D7Rat2915673085810830858274Ratregion
36317D7Rat16617475922594759226115Ratregion
37236D7Rat5112674725178347251899Ratregion
37256D7Rat10614974391053643910683Ratregion
37258D7Rat10721474442107944421311Ratregion
37270D7Rat7622873106006631060306Ratregion
37370D13Rat7920472882132728821522Ratregion
35178D7Rat4717472522328925223463Ratregion
35180D7Rat4317076173665261736830Ratregion
35237D7Rat3512571816950518169648Ratregion
36894D7Rat19316072666939026669578Ratregion
37004D7Rat18118173807380838073970Ratregion
37074D7Rat4024071777728517777527Ratregion
37772DXRat5327973910017639100207Ratregion
37790D7Rat6123172166940521669636Ratregion
36498D7Rat3316071843288318433052Ratregion
36691D7Rat2716072940968329409863Ratregion
36715D7Rat3013672782894927829089Ratregion
36723D7Rat4817072217404622174216Ratregion
34789D7Rat4613174875897948759110Ratregion
34880D7Rat3114172602921026029351Ratregion
34920D7Rat2813073146824031468378Ratregion
34999D7Rat4416276200445262004598Ratregion
35068D7Rat3214371965431719654459Ratregion
39614D7Rat16723775310609653106333Ratregion
39746D7Rat17019472671583826716030Ratregion
39884D7Rat16921174771946647719673Ratregion
39894D7Rat15422771909527219095503Ratregion
39922D7Rat17121272023897020239181Ratregion
38002D4Rat9121873577173435771942Ratregion
38198D7Rat6923076046045260460686Ratregion
38376D7Rat10924872687820826878468Ratregion
40494D7Rat19414372543852625438669Ratregion
40552D7Rat15115772765456927654716Ratregion
38630D7Rat10424972741134427411573Ratregion
38754D7Rat5721775920106959201286Ratregion
38766D7Rat8923373133391731334150Ratregion
40050D7Rat15213172360575423605887Ratregion
40058D7Rat14615075361691753617069Ratregion
38794D7Rat7323375361271453612950Ratregion
39008D7Rat9213073023913030239258Ratregion
39012D7Rat9824674975349649753746Ratregion
39016D7Rat10320074110969241109925Ratregion
39094D7Rat5824575826487858265113Ratregion
42215D7Arb168774374701243747099Ratregion
42816D7Rat21621071767833817678552Ratregion
42817D7Rat18517371781378917813954Ratregion
42818D7Rat18323371802464118024876Ratregion
42820D7Rat21514972248306122483207Ratregion
42821D7Rat18224873052789030528146Ratregion
42822D7Rat21414772782892127829070Ratregion
42823D7Rat21324973274870732748961Ratregion
42824D7Rat18013773390791133908054Ratregion
42826D7Rat21014974643188446432023Ratregion
42828D7Rat20920375762948357629662Ratregion
42830D7Rat20724175664188756642142Ratregion
42831D7Rat22814975797580457975951Ratregion
41252D7Rat14915872989088329891047Ratregion
42332D7Rat22622072228955622289774Ratregion
42335D7Rat22324172382438123824614Ratregion
42336D7Rat22223972975750429757737Ratregion
42337D7Rat22124373878749838787728Ratregion
42339D7Rat22024775853205558532298Ratregion
40812D7Rat8322273480105234801270Ratregion
40862D7Rat14511876129036361290481Ratregion
41106D7Rat14714674659953146599681Ratregion
41542D7Rat15017073007389030074080Ratregion
44222D7Got1010271903832219038424Ratregion
44224D7Wox2617872071207520712261Ratregion
44225D7Got1315272080559620805748Ratregion
44226D7Got1222272019685120197073Ratregion
44228D7Got1429972290963422909933Ratregion
44230D7Got14731072308822823088535Ratregion
44231D7Got1615772471033524710736Ratregion
44231D7Got1615772471057724710736Ratregion
44232D7Got1718972602914526029334Ratregion
44233D7Got1827772742017327420450Ratregion
44234D7Got1918672865252928652715Ratregion
44235D7Got2212172906271929062840Ratregion
44237D7Got2310572999644729996552Ratregion
44238D7Got2114973087138230871533Ratregion
44239D7Got2015873131031531310473Ratregion
44240D7Got2629273210482332105115Ratregion
44241D7Got2815773250339032503549Ratregion
44242D7Got2716973320005833200227Ratregion
44243D7Got2424672972937029729615Ratregion
44244D7Got2514373356985933570002Ratregion
44245D7Got3025873465726534657523Ratregion
44246D7Got2924973465726534657514Ratregion
44247D7Got3213073665550336655633Ratregion
44248D7Got3114973665549736655643Ratregion
44249D7Got3416774133691041337077Ratregion
44250D7Got3715474049899340499147Ratregion
44251D7Got15725174410810444108355Ratregion
44252D7Got3321474530844145308655Ratregion
44253D7Got8328574796220047962485Ratregion
44255D7Got3912874913859049138718Ratregion
44256D7Got919974887586048875959Ratregion
44257D7Got8017175003291450033085Ratregion
44258D7Got14816675141562751415793Ratregion
44259D7Got4016775410309154103255Ratregion
44262D7Got4426075852809758528354Ratregion
44265D7Got4126475485817054858434Ratregion
44266D7Got4924775476962754769874Ratregion
44267D7Got4814275814366558143807Ratregion
60575D7Got4717275677175456771926Ratregion
60571D7Got3519274552504745525239Ratregion
60572D7Got3618674044426440444450Ratregion
60574D7Got4318475665361656653800Ratregion
67815D7Uwm1114074659587446596030Ratregion
67831D7Uwm1820672559875125598966Ratregion
629585D7Got4514875661217156612319Ratregion
61292D7Uwm914373552616135526300Ratregion
62504D7Uia313074133367441333804Ratregion
66379D7Uia539176137158761371978Ratregion
66453D3Mco1918972108986321090040Ratregion
67753D7Uwm2033375863234358632680Ratregion
67779D7Uwm215171789965417899801Ratregion
67784D7Uwm320071785121017851404Ratregion
67790D7Uwm713572278614722786278Ratregion
67791D7Uwm817972882470428824885Ratregion
1631070D7Wox3717272384617323846345Ratregion
1632072D7Wox3312674994751949947647Ratregion
1632357D7Got22918376161027161610449Ratregion
1579067D10Chm25021875014650150146536Ratregion
1628011D7Got20910776081152960811636Ratregion
1628149D7Got24516972154709321547262Ratregion
1628211D7Wox3536673489495934895325Ratregion
1639140D7Wox3923675291295652913192Ratregion
1641372D7Got2089776015611560156212Ratregion
1632640D7Wox5115972085740920857568Ratregion
1632848D7Got23715675168505351685209Ratregion
1632961D7Got23018374654194146542119Ratregion
1633105D7Got22620475762954557629747Ratregion
1633198D7Cebr223372058270320582936Ratregion
1633564D7Got20723775518545355185690Ratregion
1639795D7Got25312672170741221707538Ratregion
1639913D7Wox5273004096630041111Ratregion
1640357D7Got2579572102594521026040Ratregion
1640450D7Got25611473871028438710398Ratregion
1640598D7Got25225676090697860907234Ratregion
1635672D7Got23617574265634842656521Ratregion
1635752D7Got20617575539314155393316Ratregion
1636569D7Got21916473570343235703591Ratregion
1636849D7Got22819474706939147069582Ratregion
1636907D7Got23122875479095254791180Ratregion
1637355D7Got22521773124290831243116Ratregion
1637384D7Wox3675811321258113629Ratregion
1638267D7Got24210974657039846570507Ratregion
2315416D16Nkg10415174454157144541728Ratregion
7205956Dyrk249775435474354355240Ratregion
7206048Tmed239275776912957769525Ratregion
7206060Tmed237875776918257769564Ratregion
7191287Myf591374280466842805581Ratregion
7193117Myf6074281358642814006Ratregion
7192862Igf119772228208722282284Ratregion
7192864Igf126972228204022282309Ratregion
7193071AW52761810872086026820860376Ratregion
7206422stm546acag-7A075586498355866413Ratregion
5035759WI-1975125475269275052693004Ratregion
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5082277BI27444820572035397720354182Ratregion
5082451BE11943315475753587957536033Ratregion
5088295AU04848425272720107227201321Ratregion
5088359AU04852220974909550049095709Ratregion
5088397AU04854525173478355934783810Ratregion
5085367BQ21008916575650133556501500Ratregion
5090385AU04971927175462774454629303Ratregion
5088675AU04871021174186102741861238Ratregion
5081216RH14203121372559808325598296Ratregion
5081240RH14204621373437462534374838Ratregion
5081368AI02972821275284076952840981Ratregion
5085495BQ19905018172979404529794226Ratregion
5090099AU04954921575757526157575476Ratregion
5090155AU04958329474729238447292678Ratregion
5088985AU04888625673121951031219765Ratregion
5089117AU04896417073404620534046375Ratregion
5089125AU04896817475504268155042855Ratregion
5085790BF38811118772865648828656675Ratregion
5080940RH14187120075290621752906417Ratregion
5084454AA85042011572559293325593048Ratregion
5086129BQ19986715772311821323118370Ratregion
5081086RH14195718274574439145744573Ratregion
5084768AI00834718872565125525651892Ratregion
5084768AI00834718872565170425651892Ratregion
5084808AI4121559771859395618594053Ratregion
5085020AI00959121771874879818749015Ratregion
5083109BI28174821375865120358651416Ratregion
5083143BF39086318872173570721735891Ratregion
5083241BI27573117975468136954681548Ratregion
5083343AI70362822772776874727768974Ratregion
5081665BE11791516572669864626698811Ratregion
5085246AI59847022075108784051088060Ratregion
5085687AI23151316972861395128614120Ratregion
5083717AI01021721372108076421080977Ratregion
5086819AA85051519972018431620184515Ratregion
5085892BE09964618075090130950901489Ratregion
5085918BM38443917873782042537820603Ratregion
5083791AI41292611472559684225596956Ratregion
5084036AI01167717775340686353407040Ratregion
5134353D7Uwm2325972362980623630065Ratregion
5134356D7Uwm2425675168502951685285Ratregion
5502940Tmpo99072565713425658124Ratregion
5507563WI-1439515173409467234095830Ratregion
5503788UniSTS:471082136475268698852688352Ratregion
5504272D19S653E8374505228745052370Ratregion
5504318D14S655E074695508146956484Ratregion
5504813ha2151129475730565957306635Ratregion
5504857ha260088871947654719477435Ratregion
5505294Lgr5131375108968251090995Ratregion
5505514DXS1232076070644760707416Ratregion
5506805G4577730373052785130528154Ratregion
5507027fk81g07.x197474973636649736538Ratregion
5507289fb62d09.x1072290873522909745Ratregion
5507289fb62d09.x1072290873522909751Ratregion
5500051UniSTS:23643123472124713821247372Ratregion
5500053UniSTS:23643423872380746823807706Ratregion
5500055UniSTS:23647313475571921355719347Ratregion
5500270D12S1376E9174513945545139546Ratregion
5500284D3S168713272280074222800874Ratregion
5500390GDB:38482118272233885722339039Ratregion
5502557RH12532322473018301930183813Ratregion
5500575RH13603120775267111652671323Ratregion
5500837D3S416114174636606946366850Ratregion
5503700MARC_36444-36445:1067884409:185875269638652697244Ratregion
5501337ECD21593149172618411526185606Ratregion
5501400Myf6074281358342814392Ratregion
5501436Snrpn35875871475758715094Ratregion
5501472D7S22468475331391853314002Ratregion
5501673Timp349171752394517524436Ratregion
5501962MARC_21230-21231:1032890530:1074281355142813957Ratregion
5501700MGF073495763834958490Ratregion
5502036MARC_26038-26039:1032450563:116072112216421122753Ratregion
5501866MARC_16386-16387:1017081416:181072235565022356461Ratregion
5506761G45201071756201617562389Ratregion
5506761G45201071756204617562389Ratregion
5502467RH12499017472018970420189878Ratregion
5502535RH1252124571966362819663673Ratregion
Position Markers

Flank 1: (D7Rat26)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0755,072,862 - 55,073,022NCBI
Celera744,590,656 - 44,590,819UniSTS
RH 3.4 Map7412.9RGD
RH 3.4 Map7412.9UniSTS
RH 2.0 Map7380.4RGD
SHRSP x BN Map731.05RGD
Cytogenetic Map7q12-q22UniSTS
Flank 2: (D7Rat44)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2762,004,452 - 62,004,598 (+)MAPPER
Rnor_6.0769,399,586 - 69,399,731NCBI
Rnor_5.0769,590,305 - 69,590,450UniSTS
RGSC_v3.4766,201,980 - 66,202,126RGD
RGSC_v3.4766,201,981 - 66,202,126UniSTS
RGSC_v3.1766,222,710 - 66,222,856RGD
Celera759,158,360 - 59,158,505UniSTS
FHH x ACI Map733.38UniSTS
FHH x ACI Map733.38RGD
Cytogenetic Map7 RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2303629Vencon3Ventilatory control QTL 37.25respiration trait (VT:0001943)respiration rate (CMO:0000289)74110969256793354Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)72940968353612950Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)71816950526029351Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634319Bw119Body weight QTL 1195.44abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)72782894927829089Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
61435Cia4Collagen induced arthritis QTL 45.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)75811322462004598Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general measurement method: animals were anesthetized, intestines exposed and 0.05 mL PG-PS suspension was injected; after 24 days these animals were exsanguinated and joint diameter of the right rear ankle measured on 17th day of the treatment 2316974
qtl_general software used: MapQTL software, Student's t-tests, median tests 2316974
qtl_general number of animals used: 168 F2 females 2316974
qtl_general inducing agent: peptidoglycan-polysaccharide (PG-PS) polymers 2316974