Mcs2 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

QTL: Mcs2 (Mammary carcinoma susceptibility QTL 2) Rattus norvegicus

Symbol: Mcs2
Name: Mammary carcinoma susceptibility QTL 2
RGD ID: 61369
Trait: mammary gland integrity trait   (VT:0010552)    
Measurement Type: mammary tumor number   (CMO:0000343)    
LOD Score: 3.38
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2719,032,807 - 35,526,300RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0724,738,680 - 40,433,335RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0724,887,102 - 40,471,913RGDRnor5.0
RGSC_v3.4721,161,002 - 38,377,911RGDRGSC3.4
RGSC_v3.1721,181,273 - 38,398,182RGD
Cross Type: (WF x COP) F1 x WF backcross
Strains Crossed: COP WF 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
COP  (IEA)
WF  (IEA)

References

Related QTLs

Related QTL Description Reference
Mcs6 sub_region RGD:5133689


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3086KitlgKIT ligand73489607534977215Rat
61895Dcndecorin73228125232321291Rat
70978Dusp6dual specificity phosphatase 673409284834097186Rat
3248Pahphenylalanine hydroxylase72193317921998134Rat
70995Metap2methionyl aminopeptidase 272841277128440458Rat
71010Ascl1achaete-scute family bHLH transcription factor 172190415321906003Rat
2868Igf1insulin-like growth factor 172228289522361972Rat
3358Pmchpro-melanin-concentrating hormone72251193422513250Rat
3875Tmpothymopoietin72564275225667756Rat
70986Slc25a3solute carrier family 25 member 372561193725619401Rat
628870Slc17a8solute carrier family 17 member 872399421224049498Rat
68363Halhistidine ammonia lyase72800744928037701Rat
620984Lumlumican73235899032365794Rat
621355Nudt4nudix hydrolase 473018810030204620Rat
621326Arl1ADP-ribosylation factor like GTPase 172312000423131173Rat
621303Atp2b1ATPase plasma membrane Ca2+ transporting 173373559533845226Rat
61959Txnrd1thioredoxin reductase 172083004220914990Rat
628822Stab2stabilin 272124942621433031Rat
620959Tdgthymine-DNA glycosylase72107785321097617Rat
3172Nfybnuclear transcription factor Y subunit beta72096498820980569Rat
1302940LOC362863first gene upstream of Nt5dc372112490921188191Rat
620575Apaf1apoptotic peptidase activating factor 172549414325579540Rat
735102Mybpc1myosin binding protein C172293035023015981Rat
1304915Mrpl42mitochondrial ribosomal protein L4273011797730141757Rat
3795Sycp3synaptonemal complex protein 372287405522888512Rat
621096Ube2nubiquitin-conjugating enzyme E2N73015433030184373Rat
2224Btg1BTG anti-proliferation factor 173134139131343649Rat
3200Nr2c1nuclear receptor subfamily 2, group C, member 172871534728768624Rat
1304609Actr6actin related protein 672415025024171057Rat
69273Socs2suppressor of cytokine signaling 273000636030045161Rat
628831Nr1h4nuclear receptor subfamily 1, group H, member 472384612223942085Rat
1306272SpicSpi-C transcription factor72306981523077573Rat
1307420Plxnc1plexin C172939003829543985Rat
1307494Tcp11l2t-complex 11 like 271915024119185135Rat
1305816Kerakeratocan73239738232404837Rat
1306351Tmtc3transmembrane O-mannosyltransferase targeting cadherins 373526488635310010Rat
1307241Tmcc3transmembrane and coiled-coil domain family 372889397229171935Rat
1307385Hcfc2host cell factor C272098398621019826Rat
1307774Nup37nucleoporin 3772255654422609622Rat
1305904Epycepiphycan73243662032474326Rat
1307750Nedd1NEDD1 gamma-tubulin ring complex targeting factor72723331527274486Rat
1307764Elk3ETS transcription factor ELK372776858227831088Rat
1311989Ckap4cytoskeleton-associated protein 471923081419238914Rat
1308400Chst11carbohydrate sulfotransferase 1172052453520743008Rat
1307292Slc41a2solute carrier family 41 member 272038371420491178Rat
1311462Ndufa12NADH:ubiquinone oxidoreductase subunit A1272877133028798316Rat
1561102RGD1561102similar to ribosomal protein S1272311884523119632Rat
1310482Hsp90b1heat shock protein 90 beta family member 172111043121124762Rat
1311333Lta4hleukotriene A4 hydrolase72796979628001600Rat
1311640Cep290centrosomal protein 29073531007135399392Rat
1310252Ano4anoctamin 472332901523738423Rat
1305665Scyl2SCY1 like pseudokinase 272406440424117338Rat
1309458Aldh1l2aldehyde dehydrogenase 1 family, member L272025419620305793Rat
1305457IkbipIKBKB interacting protein72557975925598548Rat
1309956Nuak1NUAK family kinase 171933003419401918Rat
1308216Usp44ubiquitin specific peptidase 4472836416928412039Rat
1309995Washc4WASH complex subunit 472018790520240228Rat
1310167Eea1early endosome antigen 173055468630722186Rat
1307947RGD1307947similar to RIKEN cDNA C430008C1973539687635408633Rat
1308879Amdhd1amidohydrolase domain containing 172804392328059156Rat
1563365Nopchap1NOP protein chaperone 172035362620359685Rat
1564589Galnt4polypeptide N-acetylgalactosaminyltransferase 473392522933927770Rat
1565556Anks1bankyrin repeat and sterile alpha motif domain containing 1B72431381025479307Rat
1564046Ccdc38coiled-coil domain containing 3872805588328129938Rat
1565753RGD1565753similar to citrate synthase73458393234704321Rat
1560432Glt8d2glycosyltransferase 8 domain containing 272102953421081081Rat
1564146Slc5a8solute carrier family 5 member 872327289123313811Rat
1560034RGD1560034similar to FLJ25323 protein72145518221653232Rat
1563761Washc3WASH complex subunit 372262107822665550Rat
1311010CraddCASP2 and RIPK1 domain containing adaptor with death domain72994024029952907Rat
1560042Ccer1coiled-coil glutamate-rich protein 173248506332521296Rat
1565947Ntn4netrin 472818661128300390Rat
1561079RGD1561079similar to integral membrane protein 2A72024966020251049Rat
1563028Appl2adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 272013524820184757Rat
1564821GnptabN-acetylglucosamine-1-phosphate transferase subunits alpha and beta72280050222866336Rat
1560606Utp20UTP20 small subunit processome component72313463023215639Rat
1565358Ndufa13-ps1NADH:ubiquinone oxidoreductase subunit A13, pseudogene 173037013930370634Rat
1565429RGD1565429similar to ribosomal protein S1972639470826395173Rat
1359283Chpt1choline phosphotransferase 172286645522915111Rat
1563125LOC500827similar to hypothetical protein FLJ3582173540614735443324Rat
1565593Cdk17cyclin-dependent kinase 1772768389027765814Rat
1565609Fgd6FYVE, RhoGEF and PH domain containing 672859760928712908Rat
1565311Polr3bRNA polymerase III subunit B71903917919142450Rat
1589768LOC299727similar to glyceraldehyde-3-phosphate dehydrogenase72589535225915853Rat
1589769LOC299725hypothetical LOC29972572573055625731426Rat
1359593Cep83centrosomal protein 8372928035829389574Rat
1359117Veztvezatin, adherens junctions transmembrane protein72851221428597429Rat
1565866RGD1565866similar to FLJ44112 protein72731649827601630Rat
1588229Snrpfsmall nuclear ribonucleoprotein polypeptide F72813042728137129Rat
1594520Uhrf1bp1lUHRF1 binding protein 1-like72418163524261720Rat
1597206Eid3EP300 interacting inhibitor of differentiation 372086007320861395Rat
1595794LOC366878similar to eukaryotic translation elongation factor 1 alpha 273419847934205120Rat
1597146LOC314776similar to Peptidyl-prolyl cis-trans isomerase A (PPIase) (Rotamase) (Cyclophilin A) (Cyclosporin A-binding protein) (P31) (p1B15)73355950233559989Rat
1594151Gas2l3growth arrest-specific 2 like 372380357823836816Rat
1593358Nt5dc35'-nucleotidase domain containing 372119055421247374Rat
1593359LOC691921hypothetical protein LOC69192172110472921108135Rat
1598133Dram1DNA-damage regulated autophagy modulator 172274279422776888Rat
1595795LOC366877similar to tubulin, alpha 173417559134176932Rat
2314264ParpbpPARP1 binding protein72251142722580834Rat
2322070LOC100360486hypothetical LOC10036048672679781826798782Rat
2320737LOC100361123CWC15 homolog73199612932000031Rat
2323080LOC100359965mesoderm posterior 2 homolog72199824921999639Rat
2323562LOC100363033hypothetical LOC10036303373548047435480916Rat
2324495LOC10036256040S ribosomal protein S21-like72826513528265549Rat
2325347Mir135amicroRNA 135a72661199026612089Rat
2323942Poc1bPOC1 centriolar protein B73392403534025908Rat
2325619Mir331microRNA 33172852739028527485Rat
4888556Mir3561microRNA 356172030754120307649Rat
6488367LOC100912201ATP synthase subunit f, mitochondrial-like72925148529251828Rat
6488764LOC100912143uncharacterized LOC10091214373042696230453658Rat
6495477LOC100910949uncharacterized LOC10091094971954870719552585Rat
6498798LOC100910453voltage-dependent anion-selective channel protein 1-like73484100034841375Rat
6495714LOC100910996uncharacterized LOC10091099672001510220058448Rat
6501070LOC100909955peptidyl-prolyl cis-trans isomerase A-like72374357523753559Rat
7515236LOC102548260uncharacterized LOC10254826072661092526704322Rat
7507440LOC102556473uncharacterized LOC10255647372969502029709955Rat
7498642LOC102550284ADNP homeobox protein 2-like72131699121324739Rat
7612429LOC102550067uncharacterized LOC10255006772039234920394703Rat
7665261LOC102552828uncharacterized LOC10255282871918484119187489Rat
7665469LOC10254714360S ribosomal protein L6-like73067408830677692Rat
7576392Plekhg7pleckstrin homology and RhoGEF domain containing G773072795230805866Rat
7641052LOC102548681annexin A7-like72389444723896632Rat
7555453LOC102549680uncharacterized LOC10254968072005818020067999Rat
7588949LOC102546610uncharacterized LOC10254661073020661730209678Rat
7570684LOC102554269uncharacterized LOC10255426972901693629030555Rat
7620450LOC102553539uncharacterized LOC10255353972799774428006748Rat
7602377LOC102554140uncharacterized LOC10255414072291524422918204Rat
7552031LOC102550725uncharacterized LOC10255072573133887031341029Rat
7585987LOC102549372proteasome subunit alpha type-4-like73011518130117547Rat
7751615LOC102546992uncharacterized LOC10254699273042347630432798Rat
7693286LOC102556774uncharacterized LOC10255677473014966130153451Rat
7727462LOC102548950uncharacterized LOC10254895072783371927839466Rat
7729702LOC102548848uncharacterized LOC10254884872765018027669365Rat
9187595LOC10369282960S ribosomal protein L9 pseudogene72379291723793629Rat
9159198LOC103692824NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial pseudogene72835176828352101Rat
9163865LOC103692815uncharacterized LOC10369281572094498320950630Rat
9421619LOC103692820cytochrome b-c1 complex subunit 7 pseudogene72566104525662232Rat
9391515LOC10369283160S ribosomal protein L3972983493329835295Rat
10395318Cep83oscentrosomal protein 83, opposite strand72926076729280248Rat
11355398LOC108351426uncharacterized LOC10835142672153562821539576Rat
11462120LOC10835161960S ribosomal protein L13 pseudogene73205808732058762Rat
11462537Trnad-guc1transfer RNA aspartic acid (anticodon GUC) 172567902625679097Rat
11464810Trnaw-cca1transfer RNA tryptophan (anticodon CCA) 172567834125678412Rat
11451003LOC108351430uncharacterized LOC10835143072586094125873120Rat
11452399Trnad-guc2transfer RNA aspartic acid (anticodon GUC) 272796938427969455Rat
11383424LOC10835161760S ribosomal protein L15-like73095126730951881Rat
11386103LOC108351618glyceraldehyde-3-phosphate dehydrogenase pseudogene73139002831391014Rat
11409121LOC108351437glyceraldehyde-3-phosphate dehydrogenase pseudogene73164368331650688Rat
11378564LOC108351620glyceraldehyde-3-phosphate dehydrogenase pseudogene73503085535032582Rat
11501359LOC108351432uncharacterized LOC10835143272959175729593257Rat
11512900LOC108351445uncharacterized LOC10835144573473581934739819Rat
11513165LOC108351425uncharacterized LOC10835142572086842920891059Rat
11495246LOC108351597uncharacterized LOC10835159772490393824915896Rat
11491535LOC108351427uncharacterized LOC10835142772180708721832716Rat
41248997LOC120093956small nucleolar RNA SNORA2472605931726059438Rat
41204714LOC120093545uncharacterized LOC12009354572053702120538723Rat
41277470LOC120093926U6 spliceosomal RNA72494002324940117Rat
41325648NEWGENE_40933693transfer RNA proline (anticodon GGG)73534918335349263Rat
41286759LOC120093990small nucleolar RNA SNORA1773055782230557964Rat
41386114LOC120094015small nucleolar RNA SNORA7972723688927237031Rat
41092649LOC120093560uncharacterized LOC12009356072937862429382893Rat
41254183LOC120093847uncharacterized LOC12009384772693764326943644Rat
41119690LOC120093566uncharacterized LOC12009356673223801332280947Rat
41175614LOC120093848glyceraldehyde-3-phosphate dehydrogenase-like73118736731188483Rat
41175762LOC120093572uncharacterized LOC12009357273498256934988018Rat
41364186LOC120093552uncharacterized LOC12009355272734776827351084Rat
41212204LOC120093130citrate synthase, mitochondrial-like73459897834601654Rat
41097296LOC120093861RNA-binding protein EWS-like73081892130820102Rat
41153677LOC120093553uncharacterized LOC12009355372782041927823060Rat
41177446LOC120093791uncharacterized LOC12009379172124958221251176Rat
41155466LOC120093797uncharacterized LOC12009379772499036524996489Rat
41265557LOC120093558uncharacterized LOC12009355872924232229247760Rat
41343476LOC120093543uncharacterized LOC12009354371955161119637656Rat
41192836LOC120093768glyceraldehyde-3-phosphate dehydrogenase-like72267030622673868Rat
41395832LOC120093971small nucleolar RNA SNORA4873510229035102431Rat
41126123LOC120093544uncharacterized LOC12009354471985993719864729Rat
41216819LOC120093923U6 spliceosomal RNA72056520020565301Rat
41289757LOC120093564uncharacterized LOC12009356473163413431640133Rat
41291036LOC120093570uncharacterized LOC12009357073430133934326597Rat
41346602LOC120093767uncharacterized LOC12009376772261161322618714Rat
41370833LOC120093563uncharacterized LOC12009356373004575430047394Rat
41270314LOC120093565uncharacterized LOC12009356573208380432101743Rat
41373641LOC120093849uncharacterized LOC12009384973211987632128347Rat
41197857LOC120093568guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5-like73390583133906268Rat
41271448LOC120093571uncharacterized LOC12009357173464404534660640Rat
41072814LOC120093559uncharacterized LOC12009355972954374029548701Rat
41081941LOC120093569uncharacterized LOC12009356973410728734116573Rat
41106785LOC120094036U2 spliceosomal RNA73119009831190164Rat
41082668LOC120093550uncharacterized LOC12009355072563345925658931Rat
41083252LOC120093551uncharacterized LOC12009355172574697425852774Rat
41200052LOC120093931U7 small nuclear RNA72386490423864965Rat
41083865LOC120093845uncharacterized LOC12009384572205417522060706Rat
41165622LOC120093862transaldolase-like73150690531508727Rat
40972371LOC120093793NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like72539004525390816Rat
41339453LOC120093792uncharacterized LOC12009379272183891321839416Rat
40951180LOC12009354714-3-3 protein gamma-like72250088822510407Rat
40976615LOC120093993small nucleolar RNA SNORA1773252924032529384Rat
40981954LOC120093842uncharacterized LOC12009384271970983419714503Rat
41002557LOC120093555proteasome subunit beta type-3-like72795525027957768Rat
40933449LOC120094035U2 spliceosomal RNA73147611531476221Rat
40960245LOC120094011small nucleolar RNA SNORA5372561335725613602Rat
41008610LOC120094026U2 spliceosomal RNA72460434224604529Rat
40938680LOC120093567uncharacterized LOC12009356773254061432737507Rat
40991469LOC120093554uncharacterized LOC12009355472792595927936004Rat
40994416LOC120093546uncharacterized LOC12009354672053020820534297Rat
40971002LOC120094020U6atac minor spliceosomal RNA72259076622590886Rat
41049173LOC120094025U2 spliceosomal RNA73194920631949396Rat
41051998LOC120093844uncharacterized LOC12009384471998196019984040Rat
41319396LOC120093795uncharacterized LOC12009379572507314925103124Rat
41153506LOC120093846glyceraldehyde-3-phosphate dehydrogenase-like72305458623055516Rat
41267854LOC120093562uncharacterized LOC12009356272977912729793246Rat
41032392LOC12009376540S ribosomal protein S18-like71988560519891826Rat
41301050LOC120093542uncharacterized LOC12009354271932825319329743Rat
41302345LOC120093556uncharacterized LOC12009355672854394228546950Rat
41036455LOC12009376640S ribosomal protein S8-like72036657220374077Rat
41038583LOC120093796uncharacterized LOC12009379672480240224830026Rat
41305107LOC120093549uncharacterized LOC12009354972301205723013510Rat
41018033LOC120093794small nuclear ribonucleoprotein-associated protein N-like72525325625253962Rat
41019105LOC12009379060S ribosomal protein L7a-like72142335421424562Rat
41240014LOC12009355760S ribosomal protein L31-like72917831129180418Rat
41309000LOC120093561dnaJ homolog subfamily C member 30, mitochondrial-like72996842929972525Rat
41022142LOC120093548basic proline-rich protein-like72268504822707006Rat
41240486LOC120093843uncharacterized LOC12009384371994539119956511Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10764D7Mit2320372228208722282284Ratregion
34051D7Mit2824872673740126737633Ratregion
34055D7Mit2214473320007033200212Ratregion
34078D7Mgh1414872250569522505844Ratregion
34166D7Mgh1513571903280719032945Ratregion
33664D7Mit725973131025731310525Ratregion
36141D7Rat4916072226618522266345Ratregion
36263D7Rat2915673085810830858274Ratregion
37270D7Rat7622873106006631060306Ratregion
37370D13Rat7920472882132728821522Ratregion
35178D7Rat4717472522328925223463Ratregion
36894D7Rat19316072666939026669578Ratregion
37790D7Rat6123172166940521669636Ratregion
36691D7Rat2716072940968329409863Ratregion
36715D7Rat3013672782894927829089Ratregion
36723D7Rat4817072217404622174216Ratregion
34880D7Rat3114172602921026029351Ratregion
34920D7Rat2813073146824031468378Ratregion
35068D7Rat3214371965431719654459Ratregion
39746D7Rat17019472671583826716030Ratregion
39894D7Rat15422771909527219095503Ratregion
39922D7Rat17121272023897020239181Ratregion
38376D7Rat10924872687820826878468Ratregion
40494D7Rat19414372543852625438669Ratregion
40552D7Rat15115772765456927654716Ratregion
38630D7Rat10424972741134427411573Ratregion
38766D7Rat8923373133391731334150Ratregion
40050D7Rat15213172360575423605887Ratregion
39008D7Rat9213073023913030239258Ratregion
42820D7Rat21514972248306122483207Ratregion
42821D7Rat18224873052789030528146Ratregion
42822D7Rat21414772782892127829070Ratregion
42823D7Rat21324973274870732748961Ratregion
42824D7Rat18013773390791133908054Ratregion
41252D7Rat14915872989088329891047Ratregion
42332D7Rat22622072228955622289774Ratregion
42335D7Rat22324172382438123824614Ratregion
42336D7Rat22223972975750429757737Ratregion
40812D7Rat8322273480105234801270Ratregion
41542D7Rat15017073007389030074080Ratregion
44222D7Got1010271903832219038424Ratregion
44224D7Wox2617872071207520712261Ratregion
44225D7Got1315272080559620805748Ratregion
44226D7Got1222272019685120197073Ratregion
44228D7Got1429972290963422909933Ratregion
44230D7Got14731072308822823088535Ratregion
44231D7Got1615772471057724710736Ratregion
44231D7Got1615772471033524710736Ratregion
44232D7Got1718972602914526029334Ratregion
44233D7Got1827772742017327420450Ratregion
44234D7Got1918672865252928652715Ratregion
44235D7Got2212172906271929062840Ratregion
44237D7Got2310572999644729996552Ratregion
44238D7Got2114973087138230871533Ratregion
44239D7Got2015873131031531310473Ratregion
44240D7Got2629273210482332105115Ratregion
44241D7Got2815773250339032503549Ratregion
44242D7Got2716973320005833200227Ratregion
44243D7Got2424672972937029729615Ratregion
44244D7Got2514373356985933570002Ratregion
44245D7Got3025873465726534657523Ratregion
44246D7Got2924973465726534657514Ratregion
67831D7Uwm1820672559875125598966Ratregion
61292D7Uwm914373552616135526300Ratregion
66453D3Mco1918972108986321090040Ratregion
67790D7Uwm713572278614722786278Ratregion
67791D7Uwm817972882470428824885Ratregion
1631070D7Wox3717272384617323846345Ratregion
1628149D7Got24516972154709321547262Ratregion
1628211D7Wox3536673489495934895325Ratregion
1632640D7Wox5115972085740920857568Ratregion
1633198D7Cebr223372058270320582936Ratregion
1639795D7Got25312672170741221707538Ratregion
1639913D7Wox5273004096630041111Ratregion
1640357D7Got2579572102594521026040Ratregion
1637355D7Got22521773124290831243116Ratregion
7192862Igf119772228208722282284Ratregion
7192864Igf126972228204022282309Ratregion
7193071AW52761810872086026820860376Ratregion
5038742RH12730621372199783621998049Ratregion
5038946RH12742319472938916729389361Ratregion
5036360Igf17772233886922338946Ratregion
5036611AU04859219971960676319606814Ratregion
5026070RH13079221872561194725612165Ratregion
7206140UniSTS:53226514172052876020528901Ratregion
5028861RH14260816672234018822340354Ratregion
5029039RH14328120972917157129171780Ratregion
5031824AU04703216673123641431236581Ratregion
5026486RH13239719072001536720015557Ratregion
5029211RH14393910873042195930422067Ratregion
5026756RH13341118671923867419238860Ratregion
5029367RH14452717272374306023743232Ratregion
5032030AU04630527173136546431365735Ratregion
5032074AU02888617773539407635394253Ratregion
5026854RH13378519172852518928525380Ratregion
5029429Ascl148272190466921905151Ratregion
5027052RH13454921472853440228534616Ratregion
5027101WI-1423712972939006929390198Ratregion
5029763BE10248915972521603125216190Ratregion
5029807BF38743116672759671827596884Ratregion
5034972RM15412072670383626703956Ratregion
5027409AW21435213372564290325643036Ratregion
5029913BI29189519772286501022865207Ratregion
5035296BM38471415573213548532135640Ratregion
5035320AW52979215972841251228412671Ratregion
5030371BE11200215673526577035265926Ratregion
5033219RH13802223872741642927416667Ratregion
5033305RH13834512472812649728126621Ratregion
5025342RH12794818772415040124150588Ratregion
5028047MHAa97h11.seq16072224179222241952Ratregion
5033381RH13862914972504110725041256Ratregion
5028121D10Mit9614373439808734398230Ratregion
5028121D10Mit9614373439778534398230Ratregion
5033711RH13983620072288925822889458Ratregion
5056083RH14417314172548035325480494Ratregion
5056293RH14429525573392106333921318Ratregion
5056441RH14438017172431473124314902Ratregion
5051619AW10805113972024971320249835Ratregion
5051739RH9463017673489527734895453Ratregion
5056649RH14450011772545665725456774Ratregion
5056929RH14466220673383572133835927Ratregion
5052033RH9480129772235602022356317Ratregion
5054259RH14312221372098149020981703Ratregion
5054391RH14319714673372957133729717Ratregion
5057464AA85873915073497684434976994Ratregion
5055425RH14379415872776973827769896Ratregion
5055433RH14379818572234775122347936Ratregion
5057628BE09578520572560181825602023Ratregion
5055067RH14358712472774797227748096Ratregion
5058528BF39316815172058538020585531Ratregion
5056299RH14429815672343806423438220Ratregion
5058710BE10235916172999224229992403Ratregion
5058828BF38712915172521876625218917Ratregion
5056617RH14448221572313420723134422Ratregion
5056481RH14440311371940133019401443Ratregion
5052233D1928620272018431920184521Ratregion
5058166BF38673015072959184729591997Ratregion
5056803RH14458915972735992127360080Ratregion
5058860BE10251115072953291029533060Ratregion
5055257RH14369711872723470927234827Ratregion
5058940BF38728117373378803933788212Ratregion
5059030BF38739119372522235825222551Ratregion
5059716BE09768118372522678225226965Ratregion
5055805RH14401210072547541725475517Ratregion
5052939RH14236116773018409530184262Ratregion
5052939RH14236116773018409530184262Ratregion
5058220AA85902419572776124527761440Ratregion
5058328AI13664721873184277231842991Ratregion
5058350BF41961214772779017527790322Ratregion
5049832RH13370720271915035419150556Ratregion
5059178BE10297818272383779923837981Ratregion
5059184BE10298819372523654325236736Ratregion
5053301RH14256916272235613222356294Ratregion
5057622BE09574615172724008727240238Ratregion
5050614RH13415818773018513930185326Ratregion
5053903RH14291713072318380023183930Ratregion
5050150RH13389120473409622434096428Ratregion
5050228RH13393521572564144225641657Ratregion
5052805RH14228416073526531835265478Ratregion
5052885RH14233016672559837225598538Ratregion
5053047RH14242319372802194428022212Ratregion
5053105RH14245617872382871923828897Ratregion
5051649AA58956210573428915634289261Ratregion
5041612RH128957072757782727578000Ratregion
5041744RH12903320972661099326611202Ratregion
5043528RH13007718573072172930721914Ratregion
5044814RH13081920372030532720305530Ratregion
5041064RH12864218872307003223070220Ratregion
5045136RH13100521372288892322889136Ratregion
5045460RH13119118272917168529171867Ratregion
5041578RH12893718072777058727770767Ratregion
5048700RH13305520273044804630448249Ratregion
5044324RH13053721373063781830638031Ratregion
5047444RH13233118372881072528810908Ratregion
5048012RH13265819472380368823803882Ratregion
5049076RH13327221172426082224261033Ratregion
5048050RH13267918073539811435398294Ratregion
5048242RH13279021372018803620188249Ratregion
5039376RH12767018272274308222743264Ratregion
5039510RH12774718772997387029974056Ratregion
5048450RH13291119372939169429391887Ratregion
5039888RH12796519272313166723131859Ratregion
5042400RH129412072384636923846561Ratregion
5042880RH12970018972306982123070010Ratregion
5042230RH12931519773018814230188339Ratregion
5040532RH12833719772565557725655774Ratregion
5042948RH12974019572107790821078103Ratregion
5042294RH12935118072111054421110724Ratregion
5043392RH12999918772018446020184647Ratregion
5040178RH12813418273232088932321071Ratregion
5040194RH12814320173236532232365523Ratregion
5042680RH12958019172313480323134994Ratregion
5041014RH12861318273460033734600519Ratregion
5072760RH13703722072083009920830319Ratregion
5075382RH13856217772318382323184000Ratregion
5075662RH13872417472083917720839351Ratregion
5075844RH13882918772416235724162544Ratregion
5076064RH13895817272289968322899855Ratregion
5072702RH13700318272118899821189180Ratregion
5076676RH13931420373372939333729596Ratregion
5076924RH13945822772547886725479094Ratregion
5074894RH13828016272768886627689028Ratregion
5077126RH13957618472547907225479256Ratregion
5076206RH13904012672382699923827125Ratregion
5076628RH13928612972776971527769844Ratregion
5076492RH13920612172813518028135301Ratregion
5077400RH13973420972049082620491035Ratregion
5077724RH13992120473392876033928964Ratregion
5077774RH13995119572836362028363815Ratregion
5078924RH14063021172111128421111914Ratregion
5078986RH14066820273378899733789200Ratregion
5078438RH14034313172098795720988088Ratregion
5079062RH14071312672812978928129915Ratregion
5072936RH13714019373018829430188487Ratregion
5079236RH14081413172035386820353999Ratregion
5071518RH13512819773402474434024941Ratregion
5071778RH13527921672406571924065935Ratregion
5071806RH13529522072111456321114783Ratregion
5073846RH13767213073497535934975489Ratregion
5073950RH13773217972251305622513235Ratregion
5073502RH13747318372915239029152573Ratregion
5072158RH13668618372547674025476923Ratregion
5074784RH13821614572408516424085309Ratregion
5061780AW53343621972938445229384671Ratregion
5066676AU04821613973444609634446235Ratregion
5066764AU04816416671945823519458401Ratregion
5066792AU04814826473414428934144557Ratregion
5066980AU04803624272051761420517849Ratregion
5067056AU04799128972595171425952003Ratregion
5067056AU04799128972595161525952003Ratregion
5067206AU04789715072089906920899216Ratregion
5067412AU04776523173030699430307225Ratregion
5067950AU04743913873287316232873300Ratregion
5068320AU04721623473230435032304586Ratregion
5070013RH9441718172233867222338853Ratregion
5068560AU04707218971931161419311803Ratregion
5069448AU04649029273096134130961635Ratregion
5069472AU04647524772274921622749460Ratregion
5069538AU04643026272579758325797840Ratregion
5070113RH9448016472199793121998095Ratregion
5069034AU0467698373012671230126795Ratregion
5070233RH9454917072251306422513234Ratregion
5069750AU02913420973040666830406879Ratregion
5061926AW52761824672086012920860375Ratregion
5062026BE10602218172020945920209640Ratregion
5062252AI45450719072235982522360015Ratregion
5062402BF39788621373208091632081129Ratregion
5064078AW52958518572406453124064716Ratregion
5060814BF38919312673227545432275580Ratregion
5060880BF39589622072798836527988585Ratregion
5062598BE10691716573467481334674978Ratregion
5064204BI29635715071923799719238147Ratregion
5060784BF38913412373068976330689886Ratregion
5061008BF40167818172527548825275669Ratregion
5062580BF40344319172374831423748505Ratregion
5062698BF40387521072530489825305108Ratregion
5066012BE11651015172769141527691566Ratregion
5066146BF40706516671955312119553287Ratregion
5063072BF4102809773263660232637048Ratregion
5064680BF39955120272853540828535610Ratregion
5064914BF39991621672058796820588184Ratregion
5084174AI01320219872048811620488312Ratregion
5082215AW43531414272099122720991369Ratregion
5087360AW53306920872522622225226430Ratregion
5086549BM38580820872787101227871210Ratregion
5086560AA85101320572018819920188404Ratregion
5082927BF39042915272952086029521012Ratregion
5083263BI27589519971923837819238580Ratregion
5090519AU04979913372029371720293850Ratregion
5084128AI23333111472425945724259571Ratregion
5081557BE11737421372939008929390302Ratregion
5081751BE11804118272854821028548392Ratregion
5084350AA79975719773232071432320911Ratregion
5084900AI00866513372101335821013491Ratregion
5085000AI17197920372406083124061034Ratregion
5082277BI27444820572035397720354182Ratregion
5088295AU04848425272720107227201321Ratregion
5088397AU04854525173478355934783810Ratregion
5081216RH14203121372559808325598296Ratregion
5081240RH14204621373437462534374838Ratregion
5085495BQ19905018172979404529794226Ratregion
5088985AU04888625673121951031219765Ratregion
5089117AU04896417073404620534046375Ratregion
5085790BF38811118772865648828656675Ratregion
5084454AA85042011572559293325593048Ratregion
5086129BQ19986715772311821323118370Ratregion
5084768AI00834718872565170425651892Ratregion
5084768AI00834718872565125525651892Ratregion
5083143BF39086318872173570721735891Ratregion
5083343AI70362822772776874727768974Ratregion
5081665BE11791516572669864626698811Ratregion
5085687AI23151316972861395128614120Ratregion
5083717AI01021721372108076421080977Ratregion
5086819AA85051519972018431620184515Ratregion
5083791AI41292611472559684225596956Ratregion
5134353D7Uwm2325972362980623630065Ratregion
5502940Tmpo99072565713425658124Ratregion
5507563WI-1439515173409467234095830Ratregion
5504857ha260088871947654719477435Ratregion
5506805G4577730373052785130528154Ratregion
5507289fb62d09.x1072290873522909751Ratregion
5507289fb62d09.x1072290873522909745Ratregion
5500051UniSTS:23643123472124713821247372Ratregion
5500053UniSTS:23643423872380746823807706Ratregion
5500284D3S168713272280074222800874Ratregion
5500390GDB:38482118272233885722339039Ratregion
5502557RH12532322473018301930183813Ratregion
5501337ECD21593149172618411526185606Ratregion
5501700MGF073495763834958490Ratregion
5502036MARC_26038-26039:1032450563:116072112216421122753Ratregion
5501866MARC_16386-16387:1017081416:181072235565022356461Ratregion
5502467RH12499017472018970420189878Ratregion
5502535RH1252124571966362819663673Ratregion
Position Markers

Flank 1: (D7Mgh15)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2719,032,807 - 19,032,945 (+)MAPPER
Rnor_6.0724,738,680 - 24,738,817NCBI
Rnor_5.0724,887,102 - 24,887,239UniSTS
RGSC_v3.4721,161,002 - 21,161,140RGD
RGSC_v3.4721,161,003 - 21,161,140UniSTS
RGSC_v3.1721,181,273 - 21,181,411RGD
Celera716,243,203 - 16,243,340UniSTS
RH 2.0 Map791.7RGD
Cytogenetic Map7 RGD
Peak: (D7Mit28)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2726,737,401 - 26,737,633 (+)MAPPER
Rnor_6.0733,044,449 - 33,044,680NCBI
Rnor_5.0733,124,095 - 33,124,326UniSTS
RGSC_v3.4729,204,227 - 29,204,458UniSTS
RGSC_v3.4729,204,226 - 29,204,458RGD
RGSC_v3.1729,224,498 - 29,224,729RGD
Celera723,855,014 - 23,855,245UniSTS
RH 3.4 Map7170.6UniSTS
RH 3.4 Map7170.6RGD
RH 2.0 Map7160.3RGD
FHH x ACI Map77.4699RGD
Flank 2: (D7Uwm9)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2735,526,161 - 35,526,300 (+)MAPPER
Rnor_6.0740,433,197 - 40,433,335NCBI
Rnor_5.0740,471,775 - 40,471,913UniSTS
RGSC_v3.4738,377,772 - 38,377,911RGD
RGSC_v3.4738,377,773 - 38,377,911UniSTS
RGSC_v3.1738,398,043 - 38,398,182RGD
Celera732,518,078 - 32,518,216UniSTS
Celera732,518,078 - 32,518,341UniSTS
Cytogenetic Map7 RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)71816950526029351Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
634319Bw119Body weight QTL 1195.44abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)72782894927829089Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)72940968353612950Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Mcs2

RGD Curation Notes
Note Type Note Reference
qtl_cross_type (WF x COP) F1 x WF backcross  
qtl_general locus confirmed by the generation of WF.COP-(D7Rat39-D7Uwm12)/1Uwm and WF.COP-D7Rat39-D7Uwm12)/2Uwm congenic strain 5133689