Coatc11 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Coatc11 (Coat color QTL 11) Rattus norvegicus

Symbol: Coatc11
Name: Coat color QTL 11
RGD ID: 10755451
Trait: coat/hair pigmentation trait   (VT:0010463)    
Measurement Type: pigmented ventral coat/hair area to total ventral coat/hair area ratio   (CMO:0001812)    
LOD Score: LRS=44
P Value: 0.0
Variance: 26.0
Inheritance Type: recessive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2717,944,357 - 62,944,357RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0724,731,465 - 69,731,465RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0724,746,760 - 69,746,760RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4721,220,269 - 66,220,269RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: AR-Ednrbsl/Hkv LE/Hkv.AR-Ednrbsl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Vertebrate Trait

Rat Strain

References

References - curated
1. Huang J, etal., Sci Rep. 2016 Jan 22;6:19697. doi: 10.1038/srep19697.
Related QTLs

Related QTL Description Reference
Coatc16 interacts with RGD:10755346


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1563124RGD1563124similar to 40S ribosomal protein S2071794654617947198Rat
619929Prdm4PR/SET domain 471795383217980489Rat
1310705Pwp1PWP1 homolog, endonuclein71798273017998728Rat
1308647Btbd11BTB domain containing 1171803515118310718Rat
1595800Ybx1-ps4Y box protein 1 related, pseudogene 471820995118211268Rat
735083Cry1cryptochrome circadian regulator 171852982318594092Rat
41085374LOC120093541sialic acid synthase-like71854432718548333Rat
1311836Mterf2mitochondrial transcription termination factor 271859820218608278Rat
1563325Tmem263transmembrane protein 26371860707718628436Rat
1308978Fhl4four and a half LIM domains 471862860818633411Rat
11394794LOC108351431uncharacterized LOC10835143171867153318677404Rat
11449646LOC108351560shugoshin-like 1 pseudogene71868569318722402Rat
631419Ric8bRIC8 guanine nucleotide exchange factor B71874671618843264Rat
1562092Rfx4regulatory factor X471885306519015378Rat
1565311Polr3bRNA polymerase III subunit B71903917919142450Rat
1307494Tcp11l2t-complex 11 like 271915024119185135Rat
7665261LOC102552828uncharacterized LOC10255282871918484119187489Rat
1311989Ckap4cytoskeleton-associated protein 471923081419238914Rat
41301050LOC120093542uncharacterized LOC12009354271932825319329743Rat
1309956Nuak1NUAK family kinase 171933003419401918Rat
6495477LOC100910949uncharacterized LOC10091094971954870719552585Rat
41343476LOC120093543uncharacterized LOC12009354371955161119637656Rat
40981954LOC120093842uncharacterized LOC12009384271970983419714503Rat
41126123LOC120093544uncharacterized LOC12009354471985993719864729Rat
41032392LOC12009376540S ribosomal protein S18-like71988560519891826Rat
41240486LOC120093843uncharacterized LOC12009384371994539119956511Rat
41051998LOC120093844uncharacterized LOC12009384471998196019984040Rat
6495714LOC100910996uncharacterized LOC10091099672001510220058448Rat
7555453LOC102549680uncharacterized LOC10254968072005818020067999Rat
1563028Appl2adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 272013524820184757Rat
1309995Washc4WASH complex subunit 472018790520240228Rat
1561079RGD1561079similar to integral membrane protein 2A72024966020251049Rat
1309458Aldh1l2aldehyde dehydrogenase 1 family, member L272025419620305793Rat
4888556Mir3561microRNA 356172030754120307649Rat
1563365Nopchap1NOP protein chaperone 172035362620359685Rat
41036455LOC12009376640S ribosomal protein S8-like72036657220374077Rat
1307292Slc41a2solute carrier family 41 member 272038371420491178Rat
7612429LOC102550067uncharacterized LOC10255006772039234920394703Rat
1308400Chst11carbohydrate sulfotransferase 1172052453520743008Rat
40994416LOC120093546uncharacterized LOC12009354672053020820534297Rat
41204714LOC120093545uncharacterized LOC12009354572053702120538723Rat
41216819LOC120093923U6 spliceosomal RNA72056520020565301Rat
61959Txnrd1thioredoxin reductase 172083004220914990Rat
1597206Eid3EP300 interacting inhibitor of differentiation 372086007320861395Rat
11513165LOC108351425uncharacterized LOC10835142572086842920891059Rat
9163865LOC103692815uncharacterized LOC10369281572094498320950630Rat
3172Nfybnuclear transcription factor Y subunit beta72096498820980569Rat
1307385Hcfc2host cell factor C272098398621019826Rat
1560432Glt8d2glycosyltransferase 8 domain containing 272102953421081081Rat
620959Tdgthymine-DNA glycosylase72107785321097617Rat
1593359LOC691921hypothetical protein LOC69192172110472921108135Rat
1310482Hsp90b1heat shock protein 90 beta family member 172111043121124762Rat
1302940LOC362863first gene upstream of Nt5dc372112490921188191Rat
1593358Nt5dc35'-nucleotidase domain containing 372119055421247374Rat
628822Stab2stabilin 272124942621433031Rat
41177446LOC120093791uncharacterized LOC12009379172124958221251176Rat
7498642LOC102550284ADNP homeobox protein 2-like72131699121324739Rat
41019105LOC12009379060S ribosomal protein L7a-like72142335421424562Rat
1560034RGD1560034similar to FLJ25323 protein72145518221653232Rat
11355398LOC108351426uncharacterized LOC10835142672153562821539576Rat
11491535LOC108351427uncharacterized LOC10835142772180708721832716Rat
41339453LOC120093792uncharacterized LOC12009379272183891321839416Rat
71010Ascl1achaete-scute family bHLH transcription factor 172190415321906003Rat
3248Pahphenylalanine hydroxylase72193317921998134Rat
2323080LOC100359965mesoderm posterior 2 homolog72199824921999639Rat
41083865LOC120093845uncharacterized LOC12009384572205417522060706Rat
2868Igf1insulin-like growth factor 172228289522361972Rat
40951180LOC12009354714-3-3 protein gamma-like72250088822510407Rat
2314264ParpbpPARP1 binding protein72251142722580834Rat
3358Pmchpro-melanin-concentrating hormone72251193422513250Rat
1307774Nup37nucleoporin 3772255654422609622Rat
40971002LOC120094020U6atac minor spliceosomal RNA72259076622590886Rat
41346602LOC120093767uncharacterized LOC12009376772261161322618714Rat
1563761Washc3WASH complex subunit 372262107822665550Rat
41192836LOC120093768glyceraldehyde-3-phosphate dehydrogenase-like72267030622673868Rat
41022142LOC120093548basic proline-rich protein-like72268504822707006Rat
1598133Dram1DNA-damage regulated autophagy modulator 172274279422776888Rat
1564821GnptabN-acetylglucosamine-1-phosphate transferase subunits alpha and beta72280050222866336Rat
1359283Chpt1choline phosphotransferase 172286645522915111Rat
3795Sycp3synaptonemal complex protein 372287405522888512Rat
7602377LOC102554140uncharacterized LOC10255414072291524422918204Rat
735102Mybpc1myosin binding protein C172293035023015981Rat
41305107LOC120093549uncharacterized LOC12009354972301205723013510Rat
41153506LOC120093846glyceraldehyde-3-phosphate dehydrogenase-like72305458623055516Rat
1306272SpicSpi-C transcription factor72306981523077573Rat
1561102RGD1561102similar to ribosomal protein S1272311884523119632Rat
621326Arl1ADP-ribosylation factor like GTPase 172312000423131173Rat
1560606Utp20UTP20 small subunit processome component72313463023215639Rat
1564146Slc5a8solute carrier family 5 member 872327289123313811Rat
1310252Ano4anoctamin 472332901523738423Rat
6501070LOC100909955peptidyl-prolyl cis-trans isomerase A-like72374357523753559Rat
9187595LOC10369282960S ribosomal protein L9 pseudogene72379291723793629Rat
1594151Gas2l3growth arrest-specific 2 like 372380357823836816Rat
628831Nr1h4nuclear receptor subfamily 1, group H, member 472384612223942085Rat
41200052LOC120093931U7 small nuclear RNA72386490423864965Rat
7641052LOC102548681annexin A7-like72389444723896632Rat
628870Slc17a8solute carrier family 17 member 872399421224049498Rat
1305665Scyl2SCY1 like pseudokinase 272406440424117338Rat
1304609Actr6actin related protein 672415025024171057Rat
1594520Uhrf1bp1lUHRF1 binding protein 1-like72418163524261720Rat
1565556Anks1bankyrin repeat and sterile alpha motif domain containing 1B72431381025479307Rat
41008610LOC120094026U2 spliceosomal RNA72460434224604529Rat
41038583LOC120093796uncharacterized LOC12009379672480240224830026Rat
11495246LOC108351597uncharacterized LOC10835159772490393824915896Rat
41277470LOC120093926U6 spliceosomal RNA72494002324940117Rat
41155466LOC120093797uncharacterized LOC12009379772499036524996489Rat
41319396LOC120093795uncharacterized LOC12009379572507314925103124Rat
41018033LOC120093794small nuclear ribonucleoprotein-associated protein N-like72525325625253962Rat
40972371LOC120093793NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like72539004525390816Rat
620575Apaf1apoptotic peptidase activating factor 172549414325579540Rat
1305457IkbipIKBKB interacting protein72557975925598548Rat
70986Slc25a3solute carrier family 25 member 372561193725619401Rat
40960245LOC120094011small nucleolar RNA SNORA5372561335725613602Rat
41082668LOC120093550uncharacterized LOC12009355072563345925658931Rat
3875Tmpothymopoietin72564275225667756Rat
9421619LOC103692820cytochrome b-c1 complex subunit 7 pseudogene72566104525662232Rat
11464810Trnaw-cca1transfer RNA tryptophan (anticodon CCA) 172567834125678412Rat
11462537Trnad-guc1transfer RNA aspartic acid (anticodon GUC) 172567902625679097Rat
1589769LOC299725hypothetical LOC29972572573055625731426Rat
41083252LOC120093551uncharacterized LOC12009355172574697425852774Rat
11451003LOC108351430uncharacterized LOC10835143072586094125873120Rat
1589768LOC299727similar to glyceraldehyde-3-phosphate dehydrogenase72589535225915853Rat
41248997LOC120093956small nucleolar RNA SNORA2472605931726059438Rat
1565429RGD1565429similar to ribosomal protein S1972639470826395173Rat
7515236LOC102548260uncharacterized LOC10254826072661092526704322Rat
2325347Mir135amicroRNA 135a72661199026612089Rat
2322070LOC100360486hypothetical LOC10036048672679781826798782Rat
41254183LOC120093847uncharacterized LOC12009384772693764326943644Rat
1307750Nedd1NEDD1 gamma-tubulin ring complex targeting factor72723331527274486Rat
41386114LOC120094015small nucleolar RNA SNORA7972723688927237031Rat
1565866RGD1565866similar to FLJ44112 protein72731649827601630Rat
41364186LOC120093552uncharacterized LOC12009355272734776827351084Rat
7729702LOC102548848uncharacterized LOC10254884872765018027669365Rat
1565593Cdk17cyclin-dependent kinase 1772768389027765814Rat
1307764Elk3ETS transcription factor ELK372776858227831088Rat
41153677LOC120093553uncharacterized LOC12009355372782041927823060Rat
7727462LOC102548950uncharacterized LOC10254895072783371927839466Rat
40991469LOC120093554uncharacterized LOC12009355472792595927936004Rat
41002557LOC120093555proteasome subunit beta type-3-like72795525027957768Rat
11452399Trnad-guc2transfer RNA aspartic acid (anticodon GUC) 272796938427969455Rat
1311333Lta4hleukotriene A4 hydrolase72796979628001600Rat
7620450LOC102553539uncharacterized LOC10255353972799774428006748Rat
68363Halhistidine ammonia lyase72800744928037701Rat
1308879Amdhd1amidohydrolase domain containing 172804392328059156Rat
1564046Ccdc38coiled-coil domain containing 3872805588328129938Rat
1588229Snrpfsmall nuclear ribonucleoprotein polypeptide F72813042728137129Rat
1565947Ntn4netrin 472818661128300390Rat
2324495LOC10036256040S ribosomal protein S21-like72826513528265549Rat
9159198LOC103692824NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial pseudogene72835176828352101Rat
1308216Usp44ubiquitin specific peptidase 4472836416928412039Rat
70995Metap2methionyl aminopeptidase 272841277128440458Rat
1359117Veztvezatin, adherens junctions transmembrane protein72851221428597429Rat
2325619Mir331microRNA 33172852739028527485Rat
41302345LOC120093556uncharacterized LOC12009355672854394228546950Rat
1565609Fgd6FYVE, RhoGEF and PH domain containing 672859760928712908Rat
3200Nr2c1nuclear receptor subfamily 2, group C, member 172871534728768624Rat
1311462Ndufa12NADH:ubiquinone oxidoreductase subunit A1272877133028798316Rat
1307241Tmcc3transmembrane and coiled-coil domain family 372889397229171935Rat
7570684LOC102554269uncharacterized LOC10255426972901693629030555Rat
41240014LOC12009355760S ribosomal protein L31-like72917831129180418Rat
41265557LOC120093558uncharacterized LOC12009355872924232229247760Rat
6488367LOC100912201ATP synthase subunit f, mitochondrial-like72925148529251828Rat
10395318Cep83oscentrosomal protein 83, opposite strand72926076729280248Rat
1359593Cep83centrosomal protein 8372928035829389574Rat
41092649LOC120093560uncharacterized LOC12009356072937862429382893Rat
1307420Plxnc1plexin C172939003829543985Rat
41072814LOC120093559uncharacterized LOC12009355972954374029548701Rat
11501359LOC108351432uncharacterized LOC10835143272959175729593257Rat
7507440LOC102556473uncharacterized LOC10255647372969502029709955Rat
41267854LOC120093562uncharacterized LOC12009356272977912729793246Rat
9391515LOC10369283160S ribosomal protein L3972983493329835295Rat
1311010CraddCASP2 and RIPK1 domain containing adaptor with death domain72994024029952907Rat
41309000LOC120093561dnaJ homolog subfamily C member 30, mitochondrial-like72996842929972525Rat
69273Socs2suppressor of cytokine signaling 273000636030045161Rat
41370833LOC120093563uncharacterized LOC12009356373004575430047394Rat
7585987LOC102549372proteasome subunit alpha type-4-like73011518130117547Rat
1304915Mrpl42mitochondrial ribosomal protein L4273011797730141757Rat
7693286LOC102556774uncharacterized LOC10255677473014966130153451Rat
621096Ube2nubiquitin-conjugating enzyme E2N73015433030184373Rat
621355Nudt4nudix hydrolase 473018810030204620Rat
7588949LOC102546610uncharacterized LOC10254661073020661730209678Rat
1565358Ndufa13-ps1NADH:ubiquinone oxidoreductase subunit A13, pseudogene 173037013930370634Rat
7751615LOC102546992uncharacterized LOC10254699273042347630432798Rat
6488764LOC100912143uncharacterized LOC10091214373042696230453658Rat
1310167Eea1early endosome antigen 173055468630722186Rat
41286759LOC120093990small nucleolar RNA SNORA1773055782230557964Rat
7665469LOC10254714360S ribosomal protein L6-like73067408830677692Rat
7576392Plekhg7pleckstrin homology and RhoGEF domain containing G773072795230805866Rat
41097296LOC120093861RNA-binding protein EWS-like73081892130820102Rat
11383424LOC10835161760S ribosomal protein L15-like73095126730951881Rat
41175614LOC120093848glyceraldehyde-3-phosphate dehydrogenase-like73118736731188483Rat
41106785LOC120094036U2 spliceosomal RNA73119009831190164Rat
7552031LOC102550725uncharacterized LOC10255072573133887031341029Rat
2224Btg1BTG anti-proliferation factor 173134139131343649Rat
11386103LOC108351618glyceraldehyde-3-phosphate dehydrogenase pseudogene73139002831391014Rat
40933449LOC120094035U2 spliceosomal RNA73147611531476221Rat
41165622LOC120093862transaldolase-like73150690531508727Rat
41289757LOC120093564uncharacterized LOC12009356473163413431640133Rat
11409121LOC108351437glyceraldehyde-3-phosphate dehydrogenase pseudogene73164368331650688Rat
41049173LOC120094025U2 spliceosomal RNA73194920631949396Rat
2320737LOC100361123CWC15 homolog73199612932000031Rat
11462120LOC10835161960S ribosomal protein L13 pseudogene73205808732058762Rat
41270314LOC120093565uncharacterized LOC12009356573208380432101743Rat
41373641LOC120093849uncharacterized LOC12009384973211987632128347Rat
41119690LOC120093566uncharacterized LOC12009356673223801332280947Rat
61895Dcndecorin73228125232321291Rat
620984Lumlumican73235899032365794Rat
1305816Kerakeratocan73239738232404837Rat
1305904Epycepiphycan73243662032474326Rat
1560042Ccer1coiled-coil glutamate-rich protein 173248506332521296Rat
40976615LOC120093993small nucleolar RNA SNORA1773252924032529384Rat
40938680LOC120093567uncharacterized LOC12009356773254061432737507Rat
1597146LOC314776similar to Peptidyl-prolyl cis-trans isomerase A (PPIase) (Rotamase) (Cyclophilin A) (Cyclosporin A-binding protein) (P31) (p1B15)73355950233559989Rat
621303Atp2b1ATPase plasma membrane Ca2+ transporting 173373559533845226Rat
41197857LOC120093568guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5-like73390583133906268Rat
2323942Poc1bPOC1 centriolar protein B73392403534025908Rat
1564589Galnt4polypeptide N-acetylgalactosaminyltransferase 473392522933927770Rat
70978Dusp6dual specificity phosphatase 673409284834097186Rat
41081941LOC120093569uncharacterized LOC12009356973410728734116573Rat
1595795LOC366877similar to tubulin, alpha 173417559134176932Rat
1595794LOC366878similar to eukaryotic translation elongation factor 1 alpha 273419847934205120Rat
41291036LOC120093570uncharacterized LOC12009357073430133934326597Rat
1565753RGD1565753similar to citrate synthase73458393234704321Rat
41212204LOC120093130citrate synthase, mitochondrial-like73459897834601654Rat
41271448LOC120093571uncharacterized LOC12009357173464404534660640Rat
11512900LOC108351445uncharacterized LOC10835144573473581934739819Rat
6498798LOC100910453voltage-dependent anion-selective channel protein 1-like73484100034841375Rat
3086KitlgKIT ligand73489607534977215Rat
41175762LOC120093572uncharacterized LOC12009357273498256934988018Rat
11378564LOC108351620glyceraldehyde-3-phosphate dehydrogenase pseudogene73503085535032582Rat
41395832LOC120093971small nucleolar RNA SNORA4873510229035102431Rat
1306351Tmtc3transmembrane O-mannosyltransferase targeting cadherins 373526488635310010Rat
1311640Cep290centrosomal protein 29073531007135399392Rat
41325648NEWGENE_40933693transfer RNA proline (anticodon GGG)73534918335349263Rat
1307947RGD1307947similar to RIKEN cDNA C430008C1973539687635408633Rat
1563125LOC500827similar to hypothetical protein FLJ3582173540614735443324Rat
2323562LOC100363033hypothetical LOC10036303373548047435480916Rat
41251481LOC120093573uncharacterized LOC12009357373655304036571045Rat
1307871Mgat4cMGAT4 family, member C73670956437485810Rat
40962455LOC120093798serine/Arginine-related protein 53-like73706576737071635Rat
6498316LOC100910482glyceraldehyde-3-phosphate dehydrogenase-like73752081437542239Rat
41235005LOC120093574glyceraldehyde-3-phosphate dehydrogenase-like73753865637541646Rat
621612Ntsneurotensin73756494437574350Rat
621329Rassf9Ras association domain family member 973759972037631553Rat
9445936LOC103690238uncharacterized LOC10369023873782986337834663Rat
41127317LOC120093863glyceraldehyde-3-phosphate dehydrogenase-like73785455637877833Rat
41365425LOC120093575uncharacterized LOC12009357573811435138131730Rat
2273Alx1ALX homeobox 173815762638177220Rat
7617285LOC102555532uncharacterized LOC10255553273818259538191405Rat
41273020LOC120093145leucine-rich repeat and IQ domain-containing protein 1-like73819159538317201Rat
41128408LOC120094005small nucleolar RNA SNORA1773828218338282302Rat
1564903Lrriq1leucine-rich repeats and IQ motif containing 173831725938409885Rat
628664Slc6a15solute carrier family 6 member 1573855305538607239Rat
41078854LOC120093967small nucleolar RNA SNORA4873856412838564271Rat
41254759LOC120093576uncharacterized LOC12009357673856646538568470Rat
41327720LOC120093901U6 spliceosomal RNA73865725238657356Rat
41028082LOC120093907U6 spliceosomal RNA73909235839092466Rat
41337737LOC120093577uncharacterized LOC12009357773951493539526972Rat
41024473LOC120094007U1 spliceosomal RNA73969504839695208Rat
41032554LOC120093864barrier-to-autointegration factor-like74027746640277911Rat
41082719LOC120094000small nucleolar RNA SNORA1774034457540344707Rat
1309848Tmtc2transmembrane O-mannosyltransferase targeting cadherins 274039237740806685Rat
40960293LOC120093898U6 spliceosomal RNA74056870340568801Rat
41115284LOC120093579uncharacterized LOC12009357974057015840572279Rat
40957379LOC120093578uncharacterized LOC12009357874076494240789988Rat
1310270Mettl25methyltransferase like 2574106227641143056Rat
1311912Ccdc59coiled-coil domain containing 5974114276041149143Rat
1305021Ppfia2PTPRF interacting protein alpha 274176571642240104Rat
1307051Acss3acyl-CoA synthetase short-chain family member 374224126142450230Rat
9417884LOC103692846sulfotransferase 1C2 pseudogene74225480842256182Rat
40969194LOC120094001small nucleolar RNA SNORA1774245986042459990Rat
621256Lin7alin-7 homolog A, crumbs cell polarity complex component74258670442742609Rat
41152665LOC120094046U5 spliceosomal RNA74265756642657674Rat
1308322Myf5myogenic factor 574280294642806177Rat
3134Myf6myogenic factor 674281300842814852Rat
41050361LOC120093580uncharacterized LOC12009358074281525443016555Rat
620779Ptprqprotein tyrosine phosphatase, receptor type, Q74283710943016917Rat
1589018Otoglotogelin-like74306580043211400Rat
1595791LOC366884similar to 60S ribosomal protein L7a (Surfeit locus protein 3)74335243243353403Rat
620013Ppp1r12aprotein phosphatase 1, regulatory subunit 12A74348280843593689Rat
69065Pawrpro-apoptotic WT1 regulator74364502843725033Rat
41023123LOC12009358160S ribosomal protein L26-like74370389943716963Rat
41368650LOC120093977small nucleolar RNA SNORA4874371172743711871Rat
41136792LOC120093582uncharacterized LOC12009358274374690243769702Rat
40962771LOC120093799uncharacterized LOC12009379974380844543814458Rat
3803Syt1synaptotagmin 174381320444358020Rat
7658882LOC102547595uncharacterized LOC10254759574397609244001594Rat
9447173LOC103692848lys-63-specific deubiquitinase BRCC36-like74401488944017678Rat
11366819LOC108351599uncharacterized LOC10835159974411558144131166Rat
6493321LOC10091142460S ribosomal protein L31-like74430012344300616Rat
41207487LOC120093800uncharacterized LOC12009380074435876544363310Rat
1594372LOC500831similar to histone deacetylase 174463472444645145Rat
1306259Nav3neuron navigator 374505220645840471Rat
41236746LOC120093801uncharacterized LOC12009380174505690445073781Rat
1310258E2f7E2F transcription factor 774615053346192739Rat
41210402LOC120093928U6 spliceosomal RNA74633498146335086Rat
61950Csrp2cysteine and glycine-rich protein 274634910946367743Rat
1595790Zdhhc17zinc finger DHHC-type palmitoyltransferase 1774636996346433691Rat
41343062LOC120093584uncharacterized LOC12009358474637888546381750Rat
41121043LOC120093583uncharacterized LOC12009358374642615046433558Rat
1588873LOC688415similar to pescadillo homolog 1, containing BRCT domain74647604946477682Rat
41017733LOC120093585uncharacterized LOC12009358574655092746568690Rat
41054798LOC120093925U6 spliceosomal RNA74655878746558886Rat
2319089LOC100361991Protein Spindly-like74658565446590216Rat
1561474Osbpl8oxysterol binding protein-like 874659694446749888Rat
41366535LOC120093586uncharacterized LOC12009358674667307546678086Rat
1596694LOC681396similar to Eukaryotic translation initiation factor 5 (eIF-5)74672305846724664Rat
1560748Bbs10Bardet-Biedl syndrome 1074675102846754132Rat
7721657LOC102548498uncharacterized LOC10254849874688330346907932Rat
71094Nap1l1nucleosome assembly protein 1-like 174693327846957853Rat
41211178LOC120093965small nucleolar RNA SNORA4874694066446940806Rat
3836Phlda1pleckstrin homology-like domain, family A, member 174696743346969637Rat
7728983LOC102548561uncharacterized LOC10254856174720865647220235Rat
11427685LOC108351449uncharacterized LOC10835144974732740847337493Rat
41375281LOC120093587uncharacterized LOC12009358774734474247363207Rat
11431842LOC108351450uncharacterized LOC10835145074744578247461331Rat
1306183Krr1KRR1, small subunit processome component homolog74747555747486996Rat
1305978Glipr1GLI pathogenesis-related 174748734247498974Rat
40927711LOC120093588uncharacterized LOC12009358874749910847512987Rat
1310205Glipr1l2GLIPR1 like 274753300947546737Rat
1563000Glipr1l1GLIPR1 like 174755063747577611Rat
1309826Caps2calcyphosine 274758063647641598Rat
2318888LOC100362094ribosomal protein L27a-like74764285247675130Rat
628829Kcnc2potassium voltage-gated channel subfamily C member 274770003547883979Rat
41098017LOC120093919U6 spliceosomal RNA74817766848177762Rat
2301984Atxn7l3bataxin 7-like 3B74832245148325975Rat
41045788LOC120093996U1 spliceosomal RNA74832846248328620Rat
7709076LOC102546573uncharacterized LOC10254657374841026548417520Rat
6486766LOC100912511tubulin alpha-1C chain-like74856449248565895Rat
41275865LOC120093950small nucleolar RNA SNORD5674872207948722132Rat
11414169LOC108351454uncharacterized LOC10835145474941918049434582Rat
1585306LOC688700similar to ADP-ribosylation factor 174972842149728965Rat
728895Trhdethyrotropin-releasing hormone degrading enzyme74994327150367371Rat
41180745LOC120093589uncharacterized LOC12009358975035015950370342Rat
41120670NEWGENE_6576114transfer RNA threonine (anticodon AGU)75036331750363395Rat
7514887LOC102549403uncharacterized LOC10254940375040092250423295Rat
41208259LOC120093590uncharacterized LOC12009359075043309750440570Rat
1595789LOC366895similar to basic transcription factor 375054446450546990Rat
631332Tph2tryptophan hydroxylase 275068569450789424Rat
9406127LOC103692856nuclear cap-binding protein subunit 2 pseudogene75073889650747463Rat
1307920Tbc1d15TBC1 domain family, member 1575080455350860272Rat
1303150Rab21RAB21, member RAS oncogene family75090405050928890Rat
735209Tmem19transmembrane protein 1975095888751007974Rat
1306287Zfc3h1zinc finger, C3H1-type containing75100825151064666Rat
41089710LOC120093959small nucleolar RNA SNORA4475101910851019230Rat
11410267LOC108351455heterogeneous nuclear ribonucleoprotein A3-like75104580151047650Rat
41346314LOC120093850MICOS complex subunit Mic10-like75107619551079347Rat
1307733Lgr5leucine rich repeat containing G protein coupled receptor 575108705951221882Rat
41214652NEWGENE_40926764transfer RNA proline (anticodon AGG)75110298851103061Rat
41084931LOC12009359139S ribosomal protein L50, mitochondrial-like75119307151213603Rat
621783Tspan8tetraspanin 875144494651479360Rat
41113964LOC120093938U7 small nuclear RNA75147428051474337Rat
7677619LOC102551386uncharacterized LOC10255138675149007851494499Rat
7638646LOC102551482uncharacterized LOC10255148275150810351519060Rat
41120201LOC120093592uncharacterized LOC12009359275152912251541332Rat
620780Ptprrprotein tyrosine phosphatase, receptor type, R75166259551929605Rat
1596425Taf7l-ps1TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 175176325951764401Rat
41355956LOC120093594uncharacterized LOC12009359475186252251881220Rat
41067918LOC120093595uncharacterized LOC12009359575189986351919776Rat
41320150LOC120093593uncharacterized LOC12009359375192974651943054Rat
1305922Ptprbprotein tyrosine phosphatase, receptor type, B75195337552034751Rat
620728Kcnmb4potassium calcium-activated channel subfamily M regulatory beta subunit 475206614552119098Rat
1311672Cnot2CCR4-NOT transcription complex, subunit 275213044452222338Rat
2318367LOC100362318protein disulfide-isomerase A4-like75224120052242264Rat
40972102LOC120093596uncharacterized LOC12009359675231948552323305Rat
1564883RGD1564883similar to 60S ribosomal protein L1275236672652367448Rat
1562127Myrflmyelin regulatory factor-like75240332452519907Rat
1582946LOC688961similar to H3 histone, family 3B75252344852526265Rat
620650Rab3ipRAB3A interacting protein75253146152575295Rat
41062939LOC120093597forkhead box protein D1-like75257457452580147Rat
1305439Best3bestrophin 375258682452656776Rat
41120395LOC120093598uncharacterized LOC12009359875263629252640179Rat
1597472LOC689014similar to CG9987-PA75266985552671671Rat
41354498LOC120093599uncharacterized LOC12009359975267695752685404Rat
1307358Lrrc10leucine-rich repeat-containing 1075268697252688369Rat
1359143Cct2chaperonin containing TCP1 subunit 275269272552705478Rat
1308201Frs2fibroblast growth factor receptor substrate 275271125552792758Rat
41286435LOC120093600uncharacterized LOC12009360075279287152805208Rat
1597418LOC689068similar to mitochondrial ribosomal protein L4775284067952841539Rat
1305741Yeats4YEATS domain containing 475285831352865454Rat
1306474RGD1306474similar to RIKEN cDNA 9530003J2375287584252880716Rat
1593616Lyc2lysozyme C type 275288688352894447Rat
3026Lyz2lysozyme 275290681052912154Rat
41016237LOC120093975small nucleolar RNA SNORA4875293013352930274Rat
1304640Cpsf6cleavage and polyadenylation specific factor 675295658953001783Rat
41127999LOC120093601uncharacterized LOC12009360175303123153044412Rat
41061317LOC120093899U6 spliceosomal RNA75312126853121371Rat
41163580LOC120093602uncharacterized LOC12009360275315392053159148Rat
7710554LOC102550217uncharacterized LOC10255021775316179253172907Rat
1310532Cpmcarboxypeptidase M75322564753286220Rat
41397689LOC120093603uncharacterized LOC12009360375322943553235643Rat
1305332Mdm2MDM2 proto-oncogene75329066053315205Rat
11428166LOC108351461uncharacterized LOC10835146175333234453341706Rat
1564876Slc35e3solute carrier family 35, member E375333709153350152Rat
621160Nup107nucleoporin 10775335374053398345Rat
620577Rap1bRAP1B, member of RAS oncogene family75342303953456388Rat
7733495LOC102550469NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-like75344091753441370Rat
41116110LOC120093604swi5-dependent recombination DNA repair protein 1 homolog75345838153461341Rat
41166350LOC120093606uncharacterized LOC12009360675346869753474503Rat
41181410LOC120093605uncharacterized LOC12009360575347407453477118Rat
41103456LOC120093607uncharacterized LOC12009360775349040553495755Rat
7725676LOC102550659uncharacterized LOC10255065975351829153525492Rat
41135449LOC120093865basic proline-rich protein-like75354472253546293Rat
1306282RGD1306282similar to RIKEN cDNA 4432406C0575355337853570587Rat
11389551LOC108351462uncharacterized LOC10835146275361951753629569Rat
11429701LOC108351463uncharacterized LOC10835146375367989253695346Rat
41304359LOC120093608uncharacterized LOC12009360875370698953713032Rat
7718419LOC102551023uncharacterized LOC10255102375371786953729789Rat
1561092Mdm1Mdm1 nuclear protein75372960353766034Rat
1561292Il22interleukin 2275380120653805673Rat
9117410LOC103692876small ubiquitin-related modifier 2 pseudogene75387473853875151Rat
2866Ifnginterferon gamma75390333953907375Rat
41268730LOC120093851uncharacterized LOC12009385175420826754212875Rat
1312039Dyrk2dual specificity tyrosine phosphorylation regulated kinase 275434872454381363Rat
41006911LOC120093866glyceraldehyde-3-phosphate dehydrogenase-like75438234054384816Rat
41324281LOC120093609uncharacterized LOC12009360975440855354439053Rat
7680912LOC102551387uncharacterized LOC10255138775462867154668020Rat
620479Cand1cullin-associated and neddylation-dissociated 175468111454719002Rat
41388923LOC120093610uncharacterized LOC12009361075473125654749431Rat
41246595LOC120093611uncharacterized LOC12009361175476188254772641Rat
1594497LOC366901similar to ribosomal protein S1275482751854827910Rat
2324060LOC100362798ubiquinol-cytochrome c reductase subunit75487514454875314Rat
41394217LOC120093612uncharacterized LOC12009361275488826954901551Rat
621667Grip1glutamate receptor interacting protein 175493485655592274Rat
41351791LOC120093803uncharacterized LOC12009380375509261455101337Rat
41052312LOC120093802uncharacterized LOC12009380275535615855359497Rat
1560103HelbDNA helicase B75558851055615979Rat
1308846Irak3interleukin-1 receptor-associated kinase 375565394955714371Rat
735173Tmbim4transmembrane BAX inhibitor motif containing 475571869055733277Rat
1308261LlphLLP homolog, long-term synaptic facilitation factor75573531755740341Rat
620617Hmga2high mobility group AT-hook 275587714555998813Rat
41181996LOC120093613uncharacterized LOC12009361375591315555941962Rat
7677968LOC102549309uncharacterized LOC10254930975596419955977306Rat
41260607LOC120093614uncharacterized LOC12009361475597827655988331Rat
7678454LOC102547249uncharacterized LOC10254724975599824456005560Rat
11502995LOC108351467uncharacterized LOC10835146775608042056091186Rat
41374847LOC120093989small nucleolar RNA SNORA1775611925456119374Rat
7542471LOC102547506uncharacterized LOC10254750675612579456140736Rat
41319368LOC120093615uncharacterized LOC12009361575617003956172387Rat
41150806LOC120093616uncharacterized LOC12009361675617856356194792Rat
1596851Msrb3methionine sulfoxide reductase B375626098556426004Rat
1562607Styx-ps1serine/threonine/tyrosine interacting protein, pseudogene 175636338956364593Rat
1596822Lemd3LEM domain containing 375641505356499047Rat
41235016LOC120093617uncharacterized LOC12009361775651237956527620Rat
619774Wif1Wnt inhibitory factor 175654805856618364Rat
41062969LOC120093618uncharacterized LOC12009361875664721756648890Rat
1561871RGD1561871similar to ribosomal protein S1075677264656773237Rat
1305255Tbc1d30TBC1 domain family, member 3075677957056869092Rat
40974068LOC120093619uncharacterized LOC12009361975686911656871824Rat
1305877Gnsglucosamine (N-acetyl)-6-sulfatase75688913956923170Rat
1311450Rassf3Ras association domain family member 375693589457000591Rat
1588588Tbk1TANK-binding kinase 175707783057110868Rat
1305562Xpotexportin for tRNA75711153657151847Rat
2322266LOC100360387hypothetical LOC10036038775715622057157537Rat
1561648RGD1561648RGD156164875717040657220930Rat
1565498Kics2KICSTOR subunit 275728421357299070Rat
1566260Srgap1SLIT-ROBO Rho GTPase activating protein 175732953257594681Rat
40973776LOC120093620uncharacterized LOC12009362075733351357348361Rat
40943516LOC120093867sentrin-specific protease 2-like75760698957608641Rat
41349511LOC120093868sentrin-specific protease 2-like75767292357674377Rat
41179485LOC120093869sentrin-specific protease 2-like75770148357703091Rat
41225140LOC120093621sentrin-specific protease 2-like75774299757743814Rat
7548711LOC102556382transmembrane emp24 domain-containing protein 2-like75776767257769695Rat
1309356Rxylt1ribitol xylosyltransferase 175777084157782695Rat
1594496Vps54-ps1vacuolar protein sorting 54 homolog (S. cerevisiae), pseudogene 175783223557834588Rat
2185Avpr1aarginine vasopressin receptor 1A75811430658118230Rat
1309528Ppm1hprotein phosphatase, Mg2+/Mn2+ dependent, 1H75833866158599547Rat
11463103LOC108351469uncharacterized LOC10835146975847271758482369Rat
41130914LOC120093622translation initiation factor IF-2-like75864181658646386Rat
2325604Mirlet7imicroRNA let-7i75864248558642569Rat
1308808Mon2MON2 homolog, regulator of endosome-to-Golgi trafficking75864937858728102Rat
11466148LOC108351468SNRPN upstream reading frame protein pseudogene75871471358716587Rat
41075487LOC120093623small nuclear ribonucleoprotein-associated protein N-like75871471358725898Rat
628795Usp15ubiquitin specific peptidase 1575875671458848778Rat
9685075Snora19small nucleolar RNA, H/ACA box 1975878050358780571Rat
1589429Tafa2TAFA chemokine like family member 275894259859418640Rat
40952871LOC120093870basic proline-rich protein-like75944207559443292Rat
41098039LOC120093624uncharacterized LOC12009362475952784359540971Rat
41286787LOC120093871protein crumbs homolog 1-like75958331659598561Rat
41375035LOC120093987small nucleolar RNA SNORA1775967884959678980Rat
1562536LOC500845LRRG0013175995394059969343Rat
40939206LOC120093872ferritin light chain 1-like76082544560837640Rat
7695057LOC102552186uncharacterized LOC10255218676097594361088913Rat
3691Slc16a7solute carrier family 16 member 776104366761211547Rat
41222853LOC120093625uncharacterized LOC12009362576107541061098225Rat
7654942LOC102552637uncharacterized LOC10255263776144449561496656Rat
7628604LOC102552423uncharacterized LOC10255242376149810261533554Rat
1560867LOC500846hypothetical protein LOC50084676167649261710711Rat
1561255Lrig3leucine-rich repeats and immunoglobulin-like domains 376181631361866275Rat
40991943LOC120093626uncharacterized LOC12009362676193670861940112Rat
1559995RGD1559995similar to developmental pluripotency associated 576252504462526042Rat
41034435NEWGENE_6576114transfer RNA threonine (anticodon AGU)76256550262565574Rat
41075389LOC120093627uncharacterized LOC12009362776262278762636248Rat
11399049LOC108351471uncharacterized LOC10835147176268101762702138Rat
40988719LOC120093981small nucleolar RNA SNORA1776268242462682554Rat
1597486LOC689000similar to DJ-1 protein76270611562706995Rat
7525893LOC102557532uncharacterized LOC10255753276270896262710729Rat
1588587Atp23ATP23 metallopeptidase and ATP synthase assembly factor homolog76271475262729893Rat
41359680LOC120093628uncharacterized LOC12009362876275332662760239Rat
11399716LOC108351472uncharacterized LOC10835147276280038462804985Rat
2319209Ctdsp2CTD small phosphatase 276280540062825306Rat
620301Aviladvillin76282545962844103Rat
1593058TsfmTs translation elongation factor, mitochondrial76282899762864784Rat
1590711Eef1akmt3EEF1A lysine methyltransferase 376285330462864558Rat
1593036Mettl1methyltransferase like 176286481662869202Rat
69192Cyp27b1cytochrome P450, family 27, subfamily b, polypeptide 176286934062876242Rat
1590688Marchf9membrane associated ring-CH-type finger 976287901762882495Rat
621120Cdk4cyclin-dependent kinase 476288564762889562Rat
1309876Tspan31tetraspanin 3176288955262892428Rat
628844Agap2ArfGAP with GTPase domain, ankyrin repeat and PH domain 276289728262914295Rat
1359574Os9OS9, endoplasmic reticulum lectin76291549862957591Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
5068616AU04703721071795637817956423Ratregion
5041808RH12907018771798027717980464Ratregion
42818D7Rat18323371802464118024876Ratregion
5079130RH14075312271803519518035317Ratregion
35237D7Rat3512571816950518169648Ratregion
5036959AU04975530071828557418285873Ratregion
36498D7Rat3316071843288318433052Ratregion
5084808AI4121559771859395618594053Ratregion
5047078RH13212120471860802218608226Ratregion
5078352RH14029119071861206118612251Ratregion
5055609RH14389921671861257818612794Ratregion
5062468BF39795813471863603318636167Ratregion
5085020AI00959121771874879818749015Ratregion
5075278RH13850218271875859018758772Ratregion
5063878BE12014419971889960418899803Ratregion
5067468AU04772611471889994818900062Ratregion
34166D7Mgh1513571903280719032945Ratregion
44222D7Got1010271903832219038424Ratregion
39894D7Rat15422771909527219095503Ratregion
5049832RH13370720271915035419150556Ratregion
5064204BI29635715071923799719238147Ratregion
5083263BI27589519971923837819238580Ratregion
5026756RH13341118671923867419238860Ratregion
5068560AU04707218971931161419311803Ratregion
5056481RH14440311371940133019401443Ratregion
5066764AU04816416671945823519458401Ratregion
5504857ha260088871947654719477435Ratregion
5066146BF40706516671955312119553287Ratregion
5036611AU04859219971960676319606814Ratregion
35068D7Rat3214371965431719654459Ratregion
5502535RH1252124571966362819663673Ratregion
5026486RH13239719072001536720015557Ratregion
5086819AA85051519972018431620184515Ratregion
5052233D1928620272018431920184521Ratregion
5043392RH12999918772018446020184647Ratregion
5048242RH13279021372018803620188249Ratregion
5086560AA85101320572018819920188404Ratregion
5502467RH12499017472018970420189878Ratregion
44226D7Got1222272019685120197073Ratregion
5062026BE10602218172020945920209640Ratregion
39922D7Rat17121272023897020239181Ratregion
5051619AW10805113972024971320249835Ratregion
5090519AU04979913372029371720293850Ratregion
5044814RH13081920372030532720305530Ratregion
5079236RH14081413172035386820353999Ratregion
5082277BI27444820572035397720354182Ratregion
5084174AI01320219872048811620488312Ratregion
5077400RH13973420972049082620491035Ratregion
5066980AU04803624272051761420517849Ratregion
7206140UniSTS:53226514172052876020528901Ratregion
1633198D7Cebr223372058270320582936Ratregion
5058528BF39316815172058538020585531Ratregion
5064914BF39991621672058796820588184Ratregion
44224D7Wox2617872071207520712261Ratregion
44225D7Got1315272080559620805748Ratregion
5072760RH13703722072083009920830319Ratregion
5075662RH13872417472083917720839351Ratregion
1632640D7Wox5115972085740920857568Ratregion
5061926AW52761824672086012920860375Ratregion
7193071AW52761810872086026820860376Ratregion
5067206AU04789715072089906920899216Ratregion
5054259RH14312221372098149020981703Ratregion
5078438RH14034313172098795720988088Ratregion
5082215AW43531414272099122720991369Ratregion
5084900AI00866513372101335821013491Ratregion
1640357D7Got2579572102594521026040Ratregion
5042948RH12974019572107790821078103Ratregion
5083717AI01021721372108076421080977Ratregion
66453D3Mco1918972108986321090040Ratregion
5042294RH12935118072111054421110724Ratregion
5078924RH14063021172111128421111914Ratregion
5071806RH13529522072111456321114783Ratregion
5502036MARC_26038-26039:1032450563:116072112216421122753Ratregion
5072702RH13700318272118899821189180Ratregion
5500051UniSTS:23643123472124713821247372Ratregion
1628149D7Got24516972154709321547262Ratregion
37790D7Rat6123172166940521669636Ratregion
1639795D7Got25312672170741221707538Ratregion
5083143BF39086318872173570721735891Ratregion
5029429Ascl148272190466921905151Ratregion
5038742RH12730621372199783621998049Ratregion
5070113RH9448016472199793121998095Ratregion
36723D7Rat4817072217404622174216Ratregion
5028047MHAa97h11.seq16072224179222241952Ratregion
36141D7Rat4916072226618522266345Ratregion
7192864Igf126972228204022282309Ratregion
10764D7Mit2320372228208722282284Ratregion
7192862Igf119772228208722282284Ratregion
42332D7Rat22622072228955622289774Ratregion
5070013RH9441718172233867222338853Ratregion
5500390GDB:38482118272233885722339039Ratregion
5036360Igf17772233886922338946Ratregion
5028861RH14260816672234018822340354Ratregion
5055433RH14379818572234775122347936Ratregion
5501866MARC_16386-16387:1017081416:181072235565022356461Ratregion
5052033RH9480129772235602022356317Ratregion
5053301RH14256916272235613222356294Ratregion
5062252AI45450719072235982522360015Ratregion
42820D7Rat21514972248306122483207Ratregion
34078D7Mgh1414872250569522505844Ratregion
5073950RH13773217972251305622513235Ratregion
5070233RH9454917072251306422513234Ratregion
5039376RH12767018272274308222743264Ratregion
5069472AU04647524772274921622749460Ratregion
67790D7Uwm713572278614722786278Ratregion
5500284D3S168713272280074222800874Ratregion
5029913BI29189519772286501022865207Ratregion
5045136RH13100521372288892322889136Ratregion
5033711RH13983620072288925822889458Ratregion
5076064RH13895817272289968322899855Ratregion
5507289fb62d09.x1072290873522909745Ratregion
5507289fb62d09.x1072290873522909751Ratregion
44228D7Got1429972290963422909933Ratregion
5042880RH12970018972306982123070010Ratregion
5041064RH12864218872307003223070220Ratregion
44230D7Got14731072308822823088535Ratregion
5086129BQ19986715772311821323118370Ratregion
5039888RH12796519272313166723131859Ratregion
5056617RH14448221572313420723134422Ratregion
5042680RH12958019172313480323134994Ratregion
5053903RH14291713072318380023183930Ratregion
5075382RH13856217772318382323184000Ratregion
5056299RH14429815672343806423438220Ratregion
40050D7Rat15213172360575423605887Ratregion
5134353D7Uwm2325972362980623630065Ratregion
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5027621AI19500512375468135754681480Ratregion
5083241BI27573117975468136954681548Ratregion
5074826RH13824113675471933654719472Ratregion
44266D7Got4924775476962754769874Ratregion
1636907D7Got23122875479095254791180Ratregion
44265D7Got4126475485817054858434Ratregion
5089125AU04896817475504268155042855Ratregion
5073944RH13772914875512186555122013Ratregion
1633564D7Got20723775518545355185690Ratregion
5030513BE10693316075527404555274205Ratregion
1635752D7Got20617575539314155393316Ratregion
5089211AU04902116775541462955414796Ratregion
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5048560RH13297420475558866255588865Ratregion
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5082265BE11908216275561308455613246Ratregion
5034127RH14146418475565403655654220Ratregion
5049514RH13352518075565787655658056Ratregion
5500055UniSTS:23647313475571921355719347Ratregion
5050918RH13433318075573228755733121Ratregion
5076528RH13922822475573228755733165Ratregion
5055385RH14377114375573988255740025Ratregion
5049704RH13363321875574006955740287Ratregion
7206422stm546acag-7A075586498355866413Ratregion
5044164RH13044615875622924056229398Ratregion
5034744BI27661817575642136956421544Ratregion
5046944RH13204419175644819856448389Ratregion
5049788RH13368220675644927056449478Ratregion
5062806AW53456918475649777356497957Ratregion
5085367BQ21008916575650133556501500Ratregion
5056085RH14417411375650236356502476Ratregion
629585D7Got4514875661217156612319Ratregion
42830D7Rat20724175664188756642142Ratregion
60574D7Got4318475665361656653800Ratregion
5030413BE10623419575671509856715293Ratregion
60575D7Got4717275677175456771926Ratregion
5080634RH14169321175677981656780029Ratregion
36099D7Rat2515775679321056793354Ratregion
5069426AU04650714575690994856910093Ratregion
5026496RH13243520175691730756918843Ratregion
5028513AU04228512975692298256923111Ratregion
5041558RH12892615275693601056936162Ratregion
5079960RH14130218175699544856995629Ratregion
5051495AW04856214675707814957078295Ratregion
5074180RH13786715375708228957082531Ratregion
5034137RH14150416275711394357114105Ratregion
5037101A008W0510275729563457295736Ratregion
5504813ha2151129475730565957306635Ratregion
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5050266RH13395720375733270957332912Ratregion
5064264BE12093217575734416357344338Ratregion
5029857AW53062219975734813357348332Ratregion
5048906RH13317418075735911557359295Ratregion
5053465RH14266411975753369657533816Ratregion
5082451BE11943315475753587957536033Ratregion
5090099AU04954921575757526157575476Ratregion
42828D7Rat20920375762948357629662Ratregion
1633105D7Got22620475762954557629747Ratregion
7206048Tmed239275776912957769525Ratregion
7206060Tmed237875776918257769564Ratregion
5086145AI45414818075783348057833661Ratregion
42831D7Rat22814975797580457975951Ratregion
1637384D7Wox3675811321258113629Ratregion
10221D7Arb1775811322458113450Ratregion
34634D4Mgh538375811434658114729Ratregion
5078168RH14018319175811796158118152Ratregion
44267D7Got4814275814366558143807Ratregion
5066922AU04807021175823791258238123Ratregion
39094D7Rat5824575826487858265113Ratregion
5062542BF40339810375844504458445147Ratregion
44262D7Got4426075852809758528354Ratregion
5030707BI30184419775852908558529282Ratregion
42339D7Rat22024775853205558532298Ratregion
5048416RH13289120075859930458599504Ratregion
5029687BF41951525075860198058602230Ratregion
5047046RH13210320375860236458602567Ratregion
67753D7Uwm2033375863234358632680Ratregion
5054401RH14320313575864959458649729Ratregion
5083109BI28174821375865120358651416Ratregion
5079682RH14114221375865255858652771Ratregion
5501436Snrpn35875871475758715094Ratregion
5071024RH13484218775875011958750306Ratregion
5084878AA80018417575875681158756986Ratregion
5026230RH131414075875832358758425Ratregion
5028253D4Mit3536875900140359001471Ratregion
38754D7Rat5721775920106959201286Ratregion
36317D7Rat16617475922594759226115Ratregion
5029488AI50193721575941814159418356Ratregion
5068668AU04700520176014162860141829Ratregion
1641372D7Got2089776015611560156212Ratregion
38198D7Rat6923076046045260460686Ratregion
5505514DXS1232076070644760707416Ratregion
1628011D7Got20910776081152960811636Ratregion
1640598D7Got25225676090697860907234Ratregion
5033489RH13901915476104380961043963Ratregion
40862D7Rat14511876129036361290481Ratregion
66379D7Uia539176137158761371978Ratregion
1632357D7Got22918376161027161610449Ratregion
5036609AU04858517676172405261724228Ratregion
35180D7Rat4317076173665261736830Ratregion
5066024BE11657916776184172961841896Ratregion
5069806AU04793122776187412561874352Ratregion
5069806AU04793122776187412561874370Ratregion
34999D7Rat4416276200445262004598Ratregion
5055707RH14395622976209302862093257Ratregion
1631140D7Got21014476247463062474774Ratregion
1637797D7Got23223176257861262578840Ratregion
5069752AU02912523276257861562578851Ratregion
5075032RH13835916776271032662710803Ratregion
5058170BF38673818976271482662715015Ratregion
5054927RH14350510176282901962829120Ratregion
5033587RH13937221976282906862829287Ratregion
7205998Avil11376282963662831041Ratregion
5061806AW52706416976283064162830810Ratregion
5046308RH13167821476284386762844081Ratregion
5049808RH13369318376287812362878306Ratregion
5073506RH13747619276287909262879284Ratregion
5504466PMC212738P37176288692062887122Ratregion
5077884RH14001518376290861462909176Ratregion
5047816RH13254519676291401962914214Ratregion
5073958RH13773722176291555162915772Ratregion
5039172RH12755320876291735262917560Ratregion
Position Markers

Peak: (D7Got36)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2740,444,264 - 40,444,450 (+)MAPPER
Rnor_6.0747,231,373 - 47,231,558NCBI
Rnor_5.0747,246,668 - 47,246,853UniSTS
RGSC_v3.4743,720,176 - 43,720,362RGD
RGSC_v3.4743,720,177 - 43,720,362UniSTS
RGSC_v3.1743,740,448 - 43,740,633RGD
Celera737,343,805 - 37,343,990UniSTS
RH 3.4 Map7364.3RGD
RH 3.4 Map7364.3UniSTS
Cytogenetic Map7q21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)71816950526029351Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
634319Bw119Body weight QTL 1195.44abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)72782894927829089Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)72940968353612950Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
2303629Vencon3Ventilatory control QTL 37.25respiration trait (VT:0001943)respiration rate (CMO:0000289)74110969256793354Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
61435Cia4Collagen induced arthritis QTL 45.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)75811322462004598Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general software used: Map Maker QTXb20 10755346
qtl_general number of animals used: 149 F2 animals 10755346
qtl_general measurement method: Dorsal and ventral sides were photographed and pigmented and non-pigmented areas traced manually; percentage of pigmented area calculated (pigmented area/total area X 100) for dorsal, ventral and total body surface 10755346