Hrtrt9 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Hrtrt9 (Heart rate QTL 9) Rattus norvegicus

Symbol: Hrtrt9
Name: Heart rate QTL 9
RGD ID: 1300138
Previously known as: Specialized Center of Research QTL 18, 22, 38, 87; SCOR18; SCOR22; SCOR38; SCOR87; Hr9
Trait: heart pumping trait   (VT:2000009)    
Measurement Type: heart rate   (CMO:0000002)    
LOD Score: 4.72
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2729,409,683 - 53,612,950RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0735,867,729 - 61,047,824RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0735,931,747 - 61,045,154RGDRnor5.0
RGSC_v3.4732,004,504 - 57,326,584RGDRGSC3.4
RGSC_v3.1732,024,776 - 57,347,162RGD
Cross Type: Not Available
Strains Crossed: BN/SsNHsd SS/JrHsdMcwi 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
hypertension  (IDA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
heart rate  (IDA)

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BN/SsNHsd  (IEA)
SS/JrHsdMcwi  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genomic map of cardiovascular phenotypes of hypertension in female Dahl S rats. Moreno C, etal., Physiol Genomics 2003 Nov 11;15(3):243-57. Epub 2003 Oct 07.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3086KitlgKIT ligand73489607534977215Rat
69065Pawrpro-apoptotic WT1 regulator74364502843725033Rat
71094Nap1l1nucleosome assembly protein 1-like 174693327846957853Rat
61895Dcndecorin73228125232321291Rat
61950Csrp2cysteine and glycine-rich protein 274634910946367743Rat
70978Dusp6dual specificity phosphatase 673409284834097186Rat
3026Lyz2lysozyme 275290681052912154Rat
3134Myf6myogenic factor 674281300842814852Rat
3803Syt1synaptotagmin 174381320444358020Rat
3836Phlda1pleckstrin homology-like domain, family A, member 174696743346969637Rat
631332Tph2tryptophan hydroxylase 275068569450789424Rat
620650Rab3ipRAB3A interacting protein75253146152575295Rat
620984Lumlumican73235899032365794Rat
621355Nudt4nudix hydrolase 473018810030204620Rat
628829Kcnc2potassium voltage-gated channel subfamily C member 274770003547883979Rat
620728Kcnmb4potassium calcium-activated channel subfamily M regulatory beta subunit 475206614552119098Rat
620013Ppp1r12aprotein phosphatase 1, regulatory subunit 12A74348280843593689Rat
620577Rap1bRAP1B, member of RAS oncogene family75342303953456388Rat
621612Ntsneurotensin73756494437574350Rat
621303Atp2b1ATPase plasma membrane Ca2+ transporting 173373559533845226Rat
621256Lin7alin-7 homolog A, crumbs cell polarity complex component74258670442742609Rat
620780Ptprrprotein tyrosine phosphatase, receptor type, R75166259551929605Rat
621160Nup107nucleoporin 10775335374053398345Rat
620779Ptprqprotein tyrosine phosphatase, receptor type, Q74283710943016917Rat
728895Trhdethyrotropin-releasing hormone degrading enzyme74994327150367371Rat
1303150Rab21RAB21, member RAS oncogene family75090405050928890Rat
1304915Mrpl42mitochondrial ribosomal protein L4273011797730141757Rat
1307051Acss3acyl-CoA synthetase short-chain family member 374224126142450230Rat
621096Ube2nubiquitin-conjugating enzyme E2N73015433030184373Rat
2224Btg1BTG anti-proliferation factor 173134139131343649Rat
621783Tspan8tetraspanin 875144494651479360Rat
69273Socs2suppressor of cytokine signaling 273000636030045161Rat
735209Tmem19transmembrane protein 1975095888751007974Rat
1304640Cpsf6cleavage and polyadenylation specific factor 675295658953001783Rat
621329Rassf9Ras association domain family member 973759972037631553Rat
1307420Plxnc1plexin C172939003829543985Rat
2273Alx1ALX homeobox 173815762638177220Rat
1305439Best3bestrophin 375258682452656776Rat
1306474RGD1306474similar to RIKEN cDNA 9530003J2375287584252880716Rat
1305741Yeats4YEATS domain containing 475285831352865454Rat
1305816Kerakeratocan73239738232404837Rat
1306259Nav3neuron navigator 374505220645840471Rat
1306351Tmtc3transmembrane O-mannosyltransferase targeting cadherins 373526488635310010Rat
1306282RGD1306282similar to RIKEN cDNA 4432406C0575355337853570587Rat
1306287Zfc3h1zinc finger, C3H1-type containing75100825151064666Rat
1305021Ppfia2PTPRF interacting protein alpha 274176571642240104Rat
1307358Lrrc10leucine-rich repeat-containing 1075268697252688369Rat
1305332Mdm2MDM2 proto-oncogene75329066053315205Rat
1305904Epycepiphycan73243662032474326Rat
1307733Lgr5leucine rich repeat containing G protein coupled receptor 575108705951221882Rat
628664Slc6a15solute carrier family 6 member 1573855305538607239Rat
1305922Ptprbprotein tyrosine phosphatase, receptor type, B75195337552034751Rat
1310205Glipr1l2GLIPR1 like 274753300947546737Rat
1308322Myf5myogenic factor 574280294642806177Rat
1311640Cep290centrosomal protein 29073531007135399392Rat
1307871Mgat4cMGAT4 family, member C73670956437485810Rat
1309848Tmtc2transmembrane O-mannosyltransferase targeting cadherins 274039237740806685Rat
1305978Glipr1GLI pathogenesis-related 174748734247498974Rat
1308201Frs2fibroblast growth factor receptor substrate 275271125552792758Rat
1309826Caps2calcyphosine 274758063647641598Rat
1310167Eea1early endosome antigen 173055468630722186Rat
1306183Krr1KRR1, small subunit processome component homolog74747555747486996Rat
1310258E2f7E2F transcription factor 774615053346192739Rat
1310270Mettl25methyltransferase like 2574106227641143056Rat
1310532Cpmcarboxypeptidase M75322564753286220Rat
1307947RGD1307947similar to RIKEN cDNA C430008C1973539687635408633Rat
1307920Tbc1d15TBC1 domain family, member 1575080455350860272Rat
1564883Rpl12a-ps1ribosomal protein L12, pseudogene 175236672652367448Rat
1564589Galnt4polypeptide N-acetylgalactosaminyltransferase 473392522933927770Rat
1311912Ccdc59coiled-coil domain containing 5974114276041149143Rat
1561474Osbpl8oxysterol binding protein-like 874659694446749888Rat
1565753RGD1565753similar to citrate synthase73458393234704321Rat
1563000Glipr1l1GLIPR1 like 174755063747577611Rat
1311010CraddCASP2 and RIPK1 domain containing adaptor with death domain72994024029952907Rat
1560042Ccer1coiled-coil glutamate-rich protein 173248506332521296Rat
1311672Cnot2CCR4-NOT transcription complex, subunit 275213044452222338Rat
1560748Bbs10Bardet-Biedl syndrome 1074675102846754132Rat
1562127Myrflmyelin regulatory factor-like75240332452519907Rat
1564903Lrriq1leucine-rich repeats and IQ motif containing 173831725938409885Rat
1565358Ndufa13-ps1NADH:ubiquinone oxidoreductase subunit A13, pseudogene 173037013930370634Rat
1563125LOC500827similar to hypothetical protein FLJ3582173540614735443324Rat
1564876Slc35e3solute carrier family 35, member E375333709153350152Rat
1359143Cct2chaperonin containing TCP1 subunit 275269272552705478Rat
1582946H3f3a-ps5H3.3 histone A, pseudogene 575252344852526265Rat
1588873Pes1-ps4pescadillo ribosomal biogenesis factor 1, pseudogene 474647604946477682Rat
1585306Arf1-ps4ADP-ribosylation factor 1, pseudogene 474972842149728965Rat
1589018Otoglotogelin-like74306580043211400Rat
1595789Btf3-ps10basic transcription factor 3, pseudogene 1075054446450546990Rat
1595790Zdhhc17zinc finger DHHC-type palmitoyltransferase 1774636996346433691Rat
1595791Rpl7a-ps26ribosomal protein L7a, pseudogene 2674335243243353403Rat
1597418Mrpl47-ps1mitochondrial ribosomal protein L47, pseudogene 175284067952841539Rat
1595794Eef1a1-ps3eukaryotic translation elongation factor 1 alpha 1, pseudogene 373419847934205120Rat
1594372Hdac1-ps6Histone deacetylase 1, pseudogene 674463472444645145Rat
1597146Ppia-ps12peptidylprolyl isomerase A, pseudogene 1273355950233559989Rat
1593616Lyc2lysozyme C type 275288688352894447Rat
1596694Eif5-ps8eukaryotic translation initiation factor 5, pseudogene 874672305846724664Rat
1597472Rtcb-ps1RNA 2',3'-cyclic phosphate and 5'-OH ligase, pseudogene 175266985552671671Rat
1595795Tuba1b-ps12tubulin, alpha 1B, pseudogene 1273417559134176932Rat
1596425Taf7l-ps1TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 175176325951764401Rat
2301984Atxn7l3bataxin 7-like 3B74832245148325975Rat
2318888Rpl27a-ps2ribosomal protein L27a,pseudogene 274764285247675130Rat
2318367Pdia4-ps1protein disulfide isomerase family A, member 4, pseudogene 175224120052242264Rat
2319089Spdl1-ps1spindle apparatus coiled-coil protein 1, pseudogene 174658565446590216Rat
2320737Cwc15-ps2CWC15 spliceosome-associated protein, pseudogene 273199612932000031Rat
2323562Rps13-ps9ribosomal protein S13, pseudogene 973548047435480916Rat
2323942Poc1bPOC1 centriolar protein B73392403534025908Rat
6488764LOC100912143uncharacterized LOC10091214373042696230453658Rat
6493321Rpl31-ps2ribosomal protein L31, pseudogene 274430012344300616Rat
6486766Tuba1b-ps5tubulin, alpha 1B, pseudogene 574856449248565895Rat
6498798LOC100910453voltage-dependent anion-selective channel protein 1-like73484100034841375Rat
6498316LOC100910482glyceraldehyde-3-phosphate dehydrogenase-like73752081437542239Rat
7514887LOC102549403uncharacterized LOC10254940375040092250423295Rat
7507440Rpl36a-ps18ribosomal protein L36A, pseudogene 1872969502029709955Rat
7665469Rpl6-ps8ribosomal protein L6, pseudogene 873067408830677692Rat
7638646LOC102551482uncharacterized LOC10255148275150810351519060Rat
7576392Plekhg7pleckstrin homology and RhoGEF domain containing G773072795230805866Rat
7658882LOC102547595uncharacterized LOC10254759574397609244001594Rat
7588949LOC102546610uncharacterized LOC10254661073020661730209678Rat
7617285LOC102555532uncharacterized LOC10255553273818259538191405Rat
7552031LOC102550725uncharacterized LOC10255072573133887031341029Rat
7585987Psma4-ps1proteasome 20S subunit alpha 4, pseudogene 173011518130117547Rat
7751615LOC102546992uncharacterized LOC10254699273042347630432798Rat
7693286LOC102556774uncharacterized LOC10255677473014966130153451Rat
7677619LOC102551386uncharacterized LOC10255138675149007851494499Rat
7725676LOC102550659uncharacterized LOC10255065975351829153525492Rat
7733495Ndufa13-ps3NADH:ubiquinone oxidoreductase subunit A13, pseudogene 375344091753441370Rat
7721657LOC102548498uncharacterized LOC10254849874688330346907932Rat
7709076LOC102546573uncharacterized LOC10254657374841026548417520Rat
7710554LOC102550217uncharacterized LOC10255021775316179253172907Rat
7728983LOC102548561uncharacterized LOC10254856174720865647220235Rat
9391515Rpl39-ps13ribosomal protein L39, pseudogene 1372983493329835295Rat
9406127LOC103692856nuclear cap-binding protein subunit 2 pseudogene75073889650747463Rat
9445936LOC103690238uncharacterized LOC10369023873782986337834663Rat
9447173Brcc3dcBRCA1/BRCA2-containing complex, subunit 3, domain containing74401488944017678Rat
9417884LOC103692846sulfotransferase 1C2 pseudogene74225480842256182Rat
11462120LOC10835161960S ribosomal protein L13 pseudogene73205808732058762Rat
11428166LOC108351461uncharacterized LOC10835146175333234453341706Rat
11366819LOC108351599uncharacterized LOC10835159974411558144131166Rat
11431842LOC108351450uncharacterized LOC10835145074744578247461331Rat
11383424Rpl15-ps4ribosomal protein L15, pseudogene 473095126730951881Rat
11414169LOC108351454uncharacterized LOC10835145474941918049434582Rat
11427685LOC108351449uncharacterized LOC10835144974732740847337493Rat
11386103LOC108351618glyceraldehyde-3-phosphate dehydrogenase pseudogene73139002831391014Rat
11409121LOC108351437glyceraldehyde-3-phosphate dehydrogenase pseudogene73164368331650688Rat
11410267Hnrnpa1-ps42heterogeneous nuclear ribonucleoprotein A1, pseudogene 4275104580151047650Rat
11378564LOC108351620glyceraldehyde-3-phosphate dehydrogenase pseudogene73503085535032582Rat
11501359LOC108351432uncharacterized LOC10835143272959175729593257Rat
11512900LOC108351445uncharacterized LOC10835144573473581934739819Rat
41354498LOC120093599uncharacterized LOC12009359975267695752685404Rat
41136792LOC120093582uncharacterized LOC12009358274374690243769702Rat
41235005Gapdh-ps30Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 3073753865637541646Rat
41275865LOC120093950small nucleolar RNA SNORD5674872207948722132Rat
41355956LOC120093594uncharacterized LOC12009359475186252251881220Rat
41089710LOC120093959small nucleolar RNA SNORA4475101910851019230Rat
41113964LOC120093938U7 small nuclear RNA75147428051474337Rat
41251481LOC120093573uncharacterized LOC12009357373655304036571045Rat
41325648NEWGENE_40933693transfer RNA proline (anticodon GGG)73534918335349263Rat
41115284LOC120093579uncharacterized LOC12009357974057015840572279Rat
41116110Sfr1-ps1SWI5-dependent homologous recombination repair protein 1, pseudogene 175345838153461341Rat
41207487LOC120093800uncharacterized LOC12009380074435876544363310Rat
41286435LOC120093600uncharacterized LOC12009360075279287152805208Rat
41286759LOC120093990small nucleolar RNA SNORA1773055782230557964Rat
41208259LOC120093590uncharacterized LOC12009359075043309750440570Rat
41327720LOC120093901U6 spliceosomal RNA73865725238657356Rat
41119690LOC120093566uncharacterized LOC12009356673223801332280947Rat
41175614Gapdh-ps34Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 3473118736731188483Rat
41175762LOC120093572uncharacterized LOC12009357273498256934988018Rat
41210402LOC120093928U6 spliceosomal RNA74633498146335086Rat
41211178LOC120093965small nucleolar RNA SNORA4874694066446940806Rat
41120201LOC120093592uncharacterized LOC12009359275152912251541332Rat
41120395LOC120093598uncharacterized LOC12009359875263629252640179Rat
41120670NEWGENE_6576114transfer RNA threonine (anticodon AGU)75036331750363395Rat
41212204Cs-ps1citrate synthase, pseudogene 173459897834601654Rat
41365425LOC120093575uncharacterized LOC12009357573811435138131730Rat
41097296Ewsr1-ps4EWS RNA-binding protein 473081892130820102Rat
41121043LOC120093583uncharacterized LOC12009358374642615046433558Rat
41343062LOC120093584uncharacterized LOC12009358474637888546381750Rat
41366535LOC120093586uncharacterized LOC12009358674667307546678086Rat
41098017LOC120093919U6 spliceosomal RNA74817766848177762Rat
41214652NEWGENE_40926764transfer RNA proline (anticodon AGG)75110298851103061Rat
41368650LOC120093977small nucleolar RNA SNORA4874371172743711871Rat
41180745LOC120093589uncharacterized LOC12009358975035015950370342Rat
41181410LOC120093605uncharacterized LOC12009360575347407453477118Rat
41395832LOC120093971small nucleolar RNA SNORA4873510229035102431Rat
41289757LOC120093564uncharacterized LOC12009356473163413431640133Rat
41291036LOC120093570uncharacterized LOC12009357073430133934326597Rat
41346314LOC120093850MICOS complex subunit Mic10-like75107619551079347Rat
41370833LOC120093563uncharacterized LOC12009356373004575430047394Rat
41397689LOC120093603uncharacterized LOC12009360375322943553235643Rat
41103456LOC120093607uncharacterized LOC12009360775349040553495755Rat
41127317Gapdh-ps39Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 3973785455637877833Rat
41127999LOC120093601uncharacterized LOC12009360175303123153044412Rat
41270314LOC120093565uncharacterized LOC12009356573208380432101743Rat
41373641LOC120093849uncharacterized LOC12009384973211987632128347Rat
41128408LOC120094005small nucleolar RNA SNORA1773828218338282302Rat
41197857Gng5-ps2G protein subunit gamma 5, pseudogene 273390583133906268Rat
41271448LOC120093571uncharacterized LOC12009357173464404534660640Rat
41072814LOC120093559uncharacterized LOC12009355972954374029548701Rat
41081941LOC120093569uncharacterized LOC12009356973410728734116573Rat
41106785LOC120094036U2 spliceosomal RNA73119009831190164Rat
41163580LOC120093602uncharacterized LOC12009360275315392053159148Rat
41273020LOC120093145leucine-rich repeat and IQ domain-containing protein 1-like73819159538317201Rat
41375281LOC120093587uncharacterized LOC12009358774734474247363207Rat
41082719LOC120094000small nucleolar RNA SNORA1774034457540344707Rat
41320150LOC120093593uncharacterized LOC12009359375192974651943054Rat
41084931LOC12009359139S ribosomal protein L50, mitochondrial-like75119307151213603Rat
41165622Taldo1-ps2transaldolase 1, pseudogene 273150690531508727Rat
41166350LOC120093606uncharacterized LOC12009360675346869753474503Rat
40972102LOC120093596uncharacterized LOC12009359675231948552323305Rat
40976615LOC120093993small nucleolar RNA SNORA1773252924032529384Rat
40927711LOC120093588uncharacterized LOC12009358874749910847512987Rat
40957379LOC120093578uncharacterized LOC12009357874076494240789988Rat
40933449LOC120094035U2 spliceosomal RNA73147611531476221Rat
40960293LOC120093898U6 spliceosomal RNA74056870340568801Rat
40962455Rsrc1-ps1arginine and serine rich coiled-coil 1, pseudogene 173706576737071635Rat
40962771LOC120093799uncharacterized LOC12009379974380844543814458Rat
40938680LOC120093567uncharacterized LOC12009356773254061432737507Rat
40969194LOC120094001small nucleolar RNA SNORA1774245986042459990Rat
41024473LOC120094007U1 spliceosomal RNA73969504839695208Rat
41049173LOC120094025U2 spliceosomal RNA73194920631949396Rat
41050361LOC120093580uncharacterized LOC12009358074281525443016555Rat
41078854LOC120093967small nucleolar RNA SNORA4873856412838564271Rat
41028082LOC120093907U6 spliceosomal RNA73909235839092466Rat
41135449LOC120093865basic proline-rich protein-like75354472253546293Rat
41254759LOC120093576uncharacterized LOC12009357673856646538568470Rat
41054798LOC120093925U6 spliceosomal RNA74655878746558886Rat
41152665LOC120094046U5 spliceosomal RNA74265756642657674Rat
41267854LOC120093562uncharacterized LOC12009356272977912729793246Rat
41032554Banf1-ps4BAF nuclear assembly factor 1, pseudogene 474027746640277911Rat
41337737LOC120093577uncharacterized LOC12009357773951493539526972Rat
41061317LOC120093899U6 spliceosomal RNA75312126853121371Rat
41062939LOC120093597forkhead box protein D1-like75257457452580147Rat
41016237LOC120093975small nucleolar RNA SNORA4875293013352930274Rat
41236746LOC120093801uncharacterized LOC12009380174505690445073781Rat
41017733LOC120093585uncharacterized LOC12009358574655092746568690Rat
41067918LOC120093595uncharacterized LOC12009359575189986351919776Rat
41309000Dnajc30-ps1DnaJ heat shock protein family (Hsp40) member C30, pseudogene 172996842929972525Rat
41045788LOC120093996U1 spliceosomal RNA74832846248328620Rat
41023123Rpl26-ps10ribosomal protein L26, pseudogene 1074370389943716963Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10880D7Mgh2212475288832652888450Ratregion
34055D7Mit2214473320007033200212Ratregion
33664D7Mit725973131025731310525Ratregion
36263D7Rat2915673085810830858274Ratregion
37236D7Rat5112674725178347251899Ratregion
37256D7Rat10614974391053643910683Ratregion
37258D7Rat10721474442107944421311Ratregion
37270D7Rat7622873106006631060306Ratregion
37004D7Rat18118173807380838073970Ratregion
37772DXRat5327973910017639100207Ratregion
36691D7Rat2716072940968329409863Ratregion
34789D7Rat4613174875897948759110Ratregion
34920D7Rat2813073146824031468378Ratregion
39614D7Rat16723775310609653106333Ratregion
39884D7Rat16921174771946647719673Ratregion
38002D4Rat9121873577173435771942Ratregion
38766D7Rat8923373133391731334150Ratregion
38794D7Rat7323375361271453612950Ratregion
39008D7Rat9213073023913030239258Ratregion
39012D7Rat9824674975349649753746Ratregion
39016D7Rat10320074110969241109925Ratregion
42215D7Arb168774374701243747099Ratregion
42821D7Rat18224873052789030528146Ratregion
42823D7Rat21324973274870732748961Ratregion
42824D7Rat18013773390791133908054Ratregion
42826D7Rat21014974643188446432023Ratregion
41252D7Rat14915872989088329891047Ratregion
42336D7Rat22223972975750429757737Ratregion
42337D7Rat22124373878749838787728Ratregion
40812D7Rat8322273480105234801270Ratregion
41106D7Rat14714674659953146599681Ratregion
41542D7Rat15017073007389030074080Ratregion
44237D7Got2310572999644729996552Ratregion
44238D7Got2114973087138230871533Ratregion
44239D7Got2015873131031531310473Ratregion
44240D7Got2629273210482332105115Ratregion
44241D7Got2815773250339032503549Ratregion
44242D7Got2716973320005833200227Ratregion
44243D7Got2424672972937029729615Ratregion
44244D7Got2514373356985933570002Ratregion
44245D7Got3025873465726534657523Ratregion
44246D7Got2924973465726534657514Ratregion
44247D7Got3213073665550336655633Ratregion
44248D7Got3114973665549736655643Ratregion
44249D7Got3416774133691041337077Ratregion
44250D7Got3715474049899340499147Ratregion
44251D7Got15725174410810444108355Ratregion
44252D7Got3321474530844145308655Ratregion
44253D7Got8328574796220047962485Ratregion
44255D7Got3912874913859049138718Ratregion
44256D7Got919974887586048875959Ratregion
44257D7Got8017175003291450033085Ratregion
44258D7Got14816675141562751415793Ratregion
60571D7Got3519274552504745525239Ratregion
60572D7Got3618674044426440444450Ratregion
67815D7Uwm1114074659587446596030Ratregion
61292D7Uwm914373552616135526300Ratregion
62504D7Uia313074133367441333804Ratregion
1632072D7Wox3312674994751949947647Ratregion
1579067D10Chm25021875014650150146536Ratregion
1628211D7Wox3536673489495934895325Ratregion
1639140D7Wox3923675291295652913192Ratregion
1632848D7Got23715675168505351685209Ratregion
1632961D7Got23018374654194146542119Ratregion
1639913D7Wox5273004096630041111Ratregion
1640450D7Got25611473871028438710398Ratregion
1635672D7Got23617574265634842656521Ratregion
1636569D7Got21916473570343235703591Ratregion
1636849D7Got22819474706939147069582Ratregion
1637355D7Got22521773124290831243116Ratregion
1638267D7Got24210974657039846570507Ratregion
2315416D16Nkg10415174454157144541728Ratregion
7191287Myf591374280466842805581Ratregion
7193117Myf6074281358642814006Ratregion
5035759WI-1975125475269275052693004Ratregion
7206518UniSTS:54684293475108878451089718Ratregion
5036223RH12564827475121044851210722Ratregion
5036470Ptprq63374284348242844115Ratregion
5037161RH7854916374381338243813545Ratregion
5031522AU04805112775240113752401264Ratregion
5026138RH13105822075036817250368392Ratregion
5026154RH13112218274348123443482285Ratregion
5026234RH13142921175253242052532631Ratregion
5026256RH13151318075192939551929575Ratregion
5029043RH14329921575100725751007472Ratregion
5031734AU04732825174075109240751340Ratregion
5031824AU04703216673123641431236581Ratregion
5026460RH13229815775068569550685852Ratregion
5029211RH14393910873042195930422067Ratregion
5034554BE11945316574994115849941323Ratregion
5032030AU04630527173136546431365735Ratregion
5032074AU02888617773539407635394253Ratregion
5034708BI28201220675328450353284709Ratregion
5029859AW53070017674408976744089943Ratregion
5032579WI-1678512674359283343592959Ratregion
5035296BM38471415573213548532135640Ratregion
5030371BE11200215673526577035265926Ratregion
502796144.MMHAP10FRG11.seq18573979455139794736Ratregion
5027987D3779216074381573143815891Ratregion
5033413RH13874412074695404646954639Ratregion
5025540RH12871919375342312353423316Ratregion
5028121D10Mit9614373439778534398230Ratregion
5028121D10Mit9614373439808734398230Ratregion
5031189AA99806021875090322550903443Ratregion
5054991RH14354211575297093352971048Ratregion
5055891RH14406210775035259250352699Ratregion
5056243RH14426611475211407352114195Ratregion
5056293RH14429525573392106333921318Ratregion
5051739RH9463017673489527734895453Ratregion
5056929RH14466220673383572133835927Ratregion
5056993Myf571674280401142804727Ratregion
5054391RH14319714673372957133729717Ratregion
5057410AA99651818975271130752711496Ratregion
5057464AA85873915073497684434976994Ratregion
5054781RH14342114875269856052699325Ratregion
5055835RH14403016475213826152138425Ratregion
5058710BE10235916172999224229992403Ratregion
5058790BE10243920674566598545666191Ratregion
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5058166BF38673015072959184729591997Ratregion
5058860BE10251115072953291029533060Ratregion
5058940BF38728117373378803933788212Ratregion
5055753RH14398212175280520452805325Ratregion
5052939RH14236116773018409530184262Ratregion
5052939RH14236116773018409530184262Ratregion
5059872BI27905218175068668550686866Ratregion
5058328AI13664721873184277231842991Ratregion
5059148BF38756317374267295142673124Ratregion
5059168BE10294218774675389246754079Ratregion
5057666BI28341721174359231043592521Ratregion
5050614RH13415818773018513930185326Ratregion
5050132RH13388019874039255440392752Ratregion
5052703RH14221815874283725642837414Ratregion
5050150RH13389120473409622434096428Ratregion
5052805RH14228416073526531835265478Ratregion
5054221RH14310010875295203352952141Ratregion
5051649AA58956210573428915634289261Ratregion
5051765RH9464518274381327643813458Ratregion
5050940RH13434618075140085851401038Ratregion
5043528RH13007718573072172930721914Ratregion
5044766RH13079118075080470450804884Ratregion
5043986RH13034418074637021646370396Ratregion
5044122RH13042221474674937846749592Ratregion
5045724RH13134219174684075446840945Ratregion
5045900RH13144320175335384653354047Ratregion
5048700RH13305520273044804630448249Ratregion
5044324RH13053721373063781830638031Ratregion
5045530RH13123019575333711953337314Ratregion
5046006RH13150418174748831847488499Ratregion
5046050RH13152921575254529352545508Ratregion
5048846RH13314018175266268052662861Ratregion
5048050RH13267918073539811435398294Ratregion
5039348RH12765420275120987451210093Ratregion
5039510RH12774718772997387029974056Ratregion
5039668RH12783821975289405052894271Ratregion
5039668RH12783821975289405052894271Ratregion
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5039328RH12764318775289402552894214Ratregion
5039328RH12764318775289402552894214Ratregion
5039328RH12764318775290704252907229Ratregion
5041954RH12915418674372479043724976Ratregion
5042230RH12931519773018814230188339Ratregion
5043320RH12995821975329078553291004Ratregion
5040178RH12813418273232088932321071Ratregion
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5042818RH12966319074636751746367707Ratregion
5041014RH12861318273460033734600519Ratregion
5043848RH13026219375203438552034578Ratregion
5041512RH12889918075193951151939691Ratregion
5072612RH13695021873856648938566707Ratregion
5075822RH13881714074635801446358154Ratregion
5074258RH13791312174348790443488025Ratregion
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5072610RH13694920875258029052581024Ratregion
5076676RH13931420373372939333729596Ratregion
5080670RH14171418374359359343593776Ratregion
5080704RH14173321974636789746368115Ratregion
5077426RH13974919075090280450902994Ratregion
5076092RH13897415575147558051475735Ratregion
5075638RH13871015874214314942143307Ratregion
5079524RH14104719575145776151457956Ratregion
5077916RH14003418774381587143816058Ratregion
5077634RH13986921974113614841136367Ratregion
5078430RH14033815175214961152149762Ratregion
5079862RH14124616075222239552222555Ratregion
5077724RH13992120473392876033928964Ratregion
5078904RH14061918075328599353286173Ratregion
5078986RH14066820273378899733789200Ratregion
5080062RH14136121974832122548321444Ratregion
5080170RH14142518074994607849946258Ratregion
5078434RH14034112174045212840452250Ratregion
5070612RH13460221775268791852688135Ratregion
5070808RH13471720075285845152858651Ratregion
5072936RH13714019373018829430188487Ratregion
5078744RH1405279075295996752960057Ratregion
5071390RH13505419775295930052959497Ratregion
5070802RH13471418575271199452712179Ratregion
5072946RH13714520875121057051210778Ratregion
5071518RH13512819773402474434024941Ratregion
5073846RH13767213073497535934975489Ratregion
5072070RH13544722374648224646482469Ratregion
5074400RH13799522175206384052064061Ratregion
5073720RH13759917973860691938607098Ratregion
5074824RH13823917174432377944323950Ratregion
5071630RH13519319674634975046349946Ratregion
5066628AU04824517475178135751781526Ratregion
5066676AU04821613973444609634446235Ratregion
5066708AU04819815175207689252077044Ratregion
5066792AU04814826473414428934144557Ratregion
5067362AU04780023174364657143646802Ratregion
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5067548AU04767819175107534451075530Ratregion
5067412AU04776523173030699430307225Ratregion
5067946AU04744121174349852743498738Ratregion
5067950AU04743913873287316232873300Ratregion
5068320AU04721623473230435032304586Ratregion
5068728AU04696917074017313140173301Ratregion
5069448AU04649029273096134130961635Ratregion
5069034AU0467698373012671230126795Ratregion
5070241RH9455316375288746852887631Ratregion
5070241RH9455316375288746852887631Ratregion
5070241RH9455316375291157852911741Ratregion
5070241RH9455316375291157852911741Ratregion
5070251RH9455916674281318742813353Ratregion
5069750AU02913420973040666830406879Ratregion
5069350AU04655514974772116747721291Ratregion
5069350AU04655514974772116747721315Ratregion
5063716BF40463610774788122347881330Ratregion
5062262BE10641916074222438842224548Ratregion
5062402BF39788621373208091632081129Ratregion
5063992BE12038821774194309741943314Ratregion
5063996BE12039519475222578452225978Ratregion
5060814BF38919312673227545432275580Ratregion
5062598BE10691716573467481334674978Ratregion
5062166BE11285916274076498340765145Ratregion
5063700BE10799915074394762443947774Ratregion
5065416BE11541518975295857552958764Ratregion
5062312BI28868918675337195953372145Ratregion
5060784BF38913412373068976330689886Ratregion
5060874BF39588918674831834248318528Ratregion
5064388BF39919119474692624546926439Ratregion
5061054BF4018929175345689253456983Ratregion
5064514BI30221320975006860450068813Ratregion
5061204BE09927115175253151452531665Ratregion
5063072BF4102809773263660232637048Ratregion
5063208BI30141920575232182852322033Ratregion
5084074AA94417119475331196053312154Ratregion
5084310AI17650519475106414251064336Ratregion
5086183BM38473817975236933052369509Ratregion
5086220AI10328018475253084952531033Ratregion
5087044BM38911821975333695053337169Ratregion
5087118AA80079918974832260048322789Ratregion
5086504AA80017117574040025340400428Ratregion
5082927BF39042915272952086029521012Ratregion
5089043AU04892114674504495645045097Ratregion
5083251BF41703121475147700051477214Ratregion
5089557AU04922617274190853341908705Ratregion
5088583AU04865627174760635047606621Ratregion
5088885AU04882726474642916046429424Ratregion
5089653AU04928315875293056352930721Ratregion
5084350AA79975719773232071432320911Ratregion
5088359AU04852220974909550049095709Ratregion
5088397AU04854525173478355934783810Ratregion
5088675AU04871021174186102741861238Ratregion
5081240RH14204621373437462534374838Ratregion
5081368AI02972821275284076952840981Ratregion
5085495BQ19905018172979404529794226Ratregion
5090155AU04958329474729238447292678Ratregion
5088985AU04888625673121951031219765Ratregion
5089117AU04896417073404620534046375Ratregion
5080940RH14187120075290621752906417Ratregion
5081086RH14195718274574439145744573Ratregion
5085246AI59847022075108784051088060Ratregion
5085892BE09964618075090130950901489Ratregion
5085918BM38443917873782042537820603Ratregion
5084036AI01167717775340686353407040Ratregion
5134356D7Uwm2425675168502951685285Ratregion
5507563WI-1439515173409467234095830Ratregion
5503788UniSTS:471082136475268698852688352Ratregion
5504272D19S653E8374505228745052370Ratregion
5504318D14S655E074695508146956484Ratregion
5505294Lgr5131375108968251090995Ratregion
5506805G4577730373052785130528154Ratregion
5507027fk81g07.x197474973636649736538Ratregion
5500270D12S1376E9174513945545139546Ratregion
5502557RH12532322473018301930183813Ratregion
5500575RH13603120775267111652671323Ratregion
5500837D3S416114174636606946366850Ratregion
5503700MARC_36444-36445:1067884409:185875269638652697244Ratregion
5501400Myf6074281358342814392Ratregion
5501472D7S22468475331391853314002Ratregion
5501962MARC_21230-21231:1032890530:1074281355142813957Ratregion
5501700MGF073495763834958490Ratregion
Position Markers

Flank 1: (D7Rat27)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2729,409,683 - 29,409,863 (+)MAPPER
Rnor_6.0735,867,729 - 35,867,908NCBI
Rnor_5.0735,931,747 - 35,931,926UniSTS
RGSC_v3.4732,004,505 - 32,004,684UniSTS
RGSC_v3.4732,004,504 - 32,004,684RGD
RGSC_v3.1732,024,776 - 32,024,955RGD
Celera726,489,080 - 26,489,243UniSTS
RH 3.4 Map7230.5RGD
RH 3.4 Map7230.5UniSTS
RH 2.0 Map7203.7RGD
SHRSP x BN Map722.05RGD
FHH x ACI Map712.22RGD
Cytogenetic Map7q13UniSTS
Peak: (D7Arb16)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2743,747,012 - 43,747,099 (-)MAPPER
Rnor_6.0751,251,919 - 51,252,005NCBI
Rnor_5.0751,264,830 - 51,264,916UniSTS
RGSC_v3.4747,145,687 - 47,145,774RGD
RGSC_v3.4747,145,688 - 47,145,774UniSTS
RGSC_v3.1747,165,959 - 47,166,045RGD
Celera740,612,727 - 40,612,813UniSTS
RH 3.4 Map7350.91UniSTS
RH 3.4 Map7350.91RGD
RH 2.0 Map7332.7RGD
SHRSP x BN Map728.15RGD
FHH x ACI Map724.55RGD
Cytogenetic Map7 RGD
Flank 2: (D7Rat73)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2753,612,714 - 53,612,950 (+)MAPPER
Rnor_6.0761,047,589 - 61,047,824NCBI
Rnor_5.0761,044,919 - 61,045,154UniSTS
RGSC_v3.4757,326,197 - 57,326,432UniSTS
RGSC_v3.4757,326,196 - 57,326,584RGD
RGSC_v3.1757,346,927 - 57,347,162RGD
Celera750,381,645 - 50,381,880UniSTS
RH 3.4 Map7487.7RGD
RH 3.4 Map7487.7UniSTS
RH 2.0 Map7413.2RGD
SHRSP x BN Map733.28RGD
FHH x ACI Map732.32RGD
Cytogenetic Map7q22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)72940968353612950Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
2303629Vencon3Ventilatory control QTL 37.25respiration trait (VT:0001943)respiration rate (CMO:0000289)74110969256793354Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Hrtrt9


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Hrtrt9  Heart rate QTL 9  Hr9    Symbol updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_general additional information, including phenotype and mapping information, can be found at Genomic Map of Cardiovascular Phenotypes 727992
qtl_general significant linkage also found to mean arterial pressure (SCOR38, LOD=3.29), heart rate on day 2 (SCOR22, LOD=3.0), and 24-hr urine volume (SCOR87, LOD=3.0) 727992
qtl_general heart rate was measured in the active state, with lights off and the rat awake 727992