Rpl39-ps13 (ribosomal protein L39, pseudogene 13) - Rat Genome Database

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Gene: Rpl39-ps13 (ribosomal protein L39, pseudogene 13) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl39-ps13
Name: ribosomal protein L39, pseudogene 13
RGD ID: 9391515
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex. Orthologous to human RPL39 (ribosomal protein L39).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: 60S ribosomal protein L39; LOC103692831
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Rpl39  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8731,721,832 - 31,722,184 (+)NCBIGRCr8
mRatBN7.2729,834,936 - 29,835,288 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX116,327,094 - 116,330,304 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0736,290,163 - 36,290,540 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX123,705,235 - 123,708,211 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl736,290,233 - 36,290,388 (+)EnsemblRnor6.0rn6Rnor6.0
Celera726,907,468 - 26,907,845 (+)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Rpl39-ps13
6 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)72940968353612950Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat


Expression


Sequence


RefSeq Acc Id: XM_008765320   ⟹   XP_008763542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2729,834,933 - 29,835,295 (+)NCBI
Rnor_6.0736,290,163 - 36,290,540 (+)NCBI
Sequence:
Protein Sequences
Ensembl Protein ENSRNOP00000075910.2
RefSeq Acc Id: XP_008763542   ⟸   XM_008765320
- Sequence:

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62893-F1-model_v2 AlphaFold P62893 1-51 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:9391515 AgrOrtholog
BioCyc Gene G2FUF-34343 BioCyc
Ensembl Genes ENSRNOG00000043348 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000050393 Ensembl
Ensembl Transcript ENSRNOT00000092456.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1620.10 UniProtKB/TrEMBL
InterPro Ribosomal_L39 UniProtKB/TrEMBL
  Ribosomal_L39_CS UniProtKB/TrEMBL
  Ribosomal_L39e_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC103692831 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L39 UniProtKB/TrEMBL
  RIBOSOMAL PROTEIN L39E UniProtKB/TrEMBL
Pfam Ribosomal_L39 UniProtKB/TrEMBL
PhenoGen Rpl39-ps13 PhenoGen
PROSITE RIBOSOMAL_L39E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000043348 RatGTEx
  ENSRNOG00000050393 RatGTEx
Superfamily-SCOP SSF48662 UniProtKB/TrEMBL
UniProt A0A8L2RBV8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-15 Rpl39-ps13  ribosomal protein L39, pseudogene 13  LOC103692831  60S ribosomal protein L39  Name and Symbol and Type changed (type changed from [protein-coding] to [pseudo]) 629549 APPROVED
2014-08-25 LOC103692831  60S ribosomal protein L39      Symbol and Name status set to provisional 70820 PROVISIONAL