Elk3 (ETS transcription factor ELK3)

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Gene: Elk3 (ETS transcription factor ELK3) Rattus norvegicus

Analyze

Symbol:

Elk3

Name:

ETS transcription factor ELK3

RGD ID:

1307764

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and transcription cis-regulatory region binding activity. Predicted to be involved in cell differentiation and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including DNA-templated transcription; angiogenesis; and regulation of DNA-templated transcription. Predicted to be located in mitochondrion and nucleoplasm. Predicted to be active in nucleus. Orthologous to human ELK3 (ETS transcription factor ELK3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ELK3, ETS transcription factor; ELK3, ETS-domain protein; ELK3, member of ETS oncogene family; ETS domain-containing protein Elk-3; LOC362871

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ELK3 (ETS transcription factor ELK3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Elk3 (ELK3, member of ETS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Elk3 (ETS transcription factor ELK3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ELK3 (ETS transcription factor ELK3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ELK3 (ETS transcription factor ELK3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Elk3 (ETS transcription factor ELK3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ELK3 (ETS transcription factor ELK3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ELK3 (ETS transcription factor ELK3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Elk3 (ETS transcription factor ELK3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ELK3 (ETS transcription factor ELK3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Elk3 (ELK3, member of ETS oncogene family)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	elk3 (ETS transcription factor ELK3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lin-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	27,768,582 - 27,831,088 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	27,768,599 - 27,804,084 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	29,758,772 - 29,794,241 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	31,920,983 - 31,956,456 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	31,708,729 - 31,744,260 (-)	NCBI	Rnor_WKY
Rnor_6.0	7	34,086,213 - 34,149,601 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	34,086,220 - 34,121,694 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	34,151,376 - 34,214,764 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	30,278,949 - 30,314,430 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	30,301,814 - 30,341,560 (-)	NCBI
Celera	7	24,871,097 - 24,906,573 (-)	NCBI		Celera
Cytogenetic Map	7	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Neoplasms (ISO)

congenital chylothorax (ISS)

diastolic heart failure (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

carbon nanotube (ISO)

cisplatin (EXP)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

Cuprizon (EXP)

D-glucose (ISO)

diazinon (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

fenamidone (ISO)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

glucose (ISO)

hydralazine (ISO)

indometacin (EXP)

lipopolysaccharide (ISO)

manganese(II) chloride (ISO)

mercury dibromide (ISO)

methylmercury chloride (ISO)

methylparaben (ISO)

mitomycin C (ISO)

N,N-diethyl-m-toluamide (EXP)

N-methyl-N'-nitro-N-nitrosoguanidine (ISO)

oxaliplatin (EXP)

panobinostat (ISO)

paracetamol (EXP,ISO)

permethrin (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

phosgene (ISO)

pirinixic acid (ISO)

rotenone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

thioacetamide (EXP)

topotecan (EXP)

trichostatin A (ISO)

tris(2-butoxyethyl) phosphate (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

angiogenesis (ISO)

negative regulation of DNA-templated transcription (ISO)

negative regulation of transcription by RNA polymerase II (IEA)

positive regulation of DNA-templated transcription (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of DNA-templated transcription (ISO)

regulation of transcription by RNA polymerase II (IBA)

wound healing (ISO)

Cellular Component

cytoplasm (ISO)

mitochondrion (IEA)

mitochondrion (ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,ISO)

Molecular Function

DNA binding (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

DNA-binding transcription repressor activity, RNA polymerase II-specific (ISO)

protein binding (ISO)

purine-rich negative regulatory element binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (ISO)

sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12788937	PMID:12933792	PMID:12975317	PMID:20304071

Genomics

Comparative Map Data

Elk3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	27,768,582 - 27,831,088 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	27,768,599 - 27,804,084 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	29,758,772 - 29,794,241 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	31,920,983 - 31,956,456 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	31,708,729 - 31,744,260 (-)	NCBI	Rnor_WKY
Rnor_6.0	7	34,086,213 - 34,149,601 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	34,086,220 - 34,121,694 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	34,151,376 - 34,214,764 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	30,278,949 - 30,314,430 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	30,301,814 - 30,341,560 (-)	NCBI
Celera	7	24,871,097 - 24,906,573 (-)	NCBI		Celera
Cytogenetic Map	7	q13	NCBI

ELK3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	96,194,375 - 96,269,824 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	12	96,194,375 - 96,269,824 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	96,588,153 - 96,663,602 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	95,112,338 - 95,185,740 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	95,090,674 - 95,164,074	NCBI
Celera	12	96,254,361 - 96,327,823 (+)	NCBI		Celera
Cytogenetic Map	12	q23.1	NCBI
HuRef	12	93,649,878 - 93,723,427 (+)	NCBI		HuRef
CHM1_1	12	96,553,591 - 96,626,971 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	96,168,506 - 96,244,027 (+)	NCBI		T2T-CHM13v2.0

Elk3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	93,083,277 - 93,147,021 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	93,083,276 - 93,146,997 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	93,247,415 - 93,311,159 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	93,247,414 - 93,311,135 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	92,710,161 - 92,773,904 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	92,678,681 - 92,740,838 (-)	NCBI		MGSCv36	mm8
Celera	10	95,232,493 - 95,295,617 (-)	NCBI		Celera
Cytogenetic Map	10	C2	NCBI
cM Map	10	48.04	NCBI

Elk3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	32,526,673 - 32,557,197 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	32,526,911 - 32,559,580 (+)	NCBI	ChiLan1.0	ChiLan1.0

ELK3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	12	97,223,198 - 97,276,120 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	97,223,198 - 97,276,120 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	12	93,781,034 - 93,863,042 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

ELK3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	35,950,513 - 36,015,315 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	35,950,685 - 36,013,081 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	36,336,857 - 36,401,032 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	36,616,449 - 36,680,834 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	36,616,440 - 36,680,828 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	35,888,292 - 35,952,734 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	35,983,301 - 36,047,655 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	36,246,490 - 36,311,229 (+)	NCBI		UU_Cfam_GSD_1.0

Elk3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	23,929,055 - 23,991,273 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936507	12,244,163 - 12,307,623 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936507	12,244,163 - 12,307,621 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ELK3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	87,285,238 - 87,354,208 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	87,285,237 - 87,355,201 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	91,504,751 - 91,536,238 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ELK3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	91,556,276 - 91,633,236 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	91,556,333 - 91,633,592 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	153,494,528 - 153,572,133 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Elk3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	11,059,226 - 11,114,923 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624750	11,059,604 - 11,114,878 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Elk3
244 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	577
Count of miRNA genes:	280
Interacting mature miRNAs:	355
Transcripts:	ENSRNOT00000005911
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	27829089	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	31962314	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	31962314	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34000259	Rat
2317047	Wbc4	White blood cell count QTL 4		0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	7	1	35342956	Rat
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	44782185	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1	44822433	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
10755438	Coatc9	Coat color QTL 9		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	3529280	48529280	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	5329019	50329019	Rat
10755440	Coatc10	Coat color QTL 10		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	7496499	52496499	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	7573985	52573985	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	9462246	58265113	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	9462246	98011544	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	9866467	60460686	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	15573889	60573889	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
2317059	Aia15	Adjuvant induced arthritis QTL 15	2.46		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	17004598	62004598	Rat
10755451	Coatc11	Coat color QTL 11		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	17944357	62944357	Rat
61369	Mcs2	Mammary carcinoma susceptibility QTL 2	3.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	19032807	35526300	Rat
1354637	Scl30	Serum cholesterol level QTL 30	3.7		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	7	19654317	49753746	Rat
1354644	Spl4	Serum phospholipid level QTL 4	4.9		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	7	19654317	49753746	Rat
1354639	Spl5	Serum phospholipid level QTL 5	3.9		blood LDL phospholipid amount (VT:0010505)	blood low density lipoprotein phospholipid level (CMO:0001568)	7	19654317	52888450	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	19654317	84928080	Rat
2290372	Gluco33	Glucose level QTL 33	2.71		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	20555705	29891047	Rat
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	21921195	66921195	Rat
1641885	Alcrsp9	Alcohol response QTL 9			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	7	24099606	69099606	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	24751841	69751841	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	26737401	63902784	Rat
634319	Bw119	Body weight QTL 119	5.44		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight to body weight ratio (CMO:0000095)	7	27828949	27829089	Rat

Markers in Region

D7Rat30

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	27,828,949 - 27,829,089 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	34,147,033 - 34,147,172	NCBI	Rnor6.0
Rnor_5.0	7	34,212,196 - 34,212,335	UniSTS	Rnor5.0
RGSC_v3.4	7	30,339,293 - 30,339,432	UniSTS	RGSC3.4
RGSC_v3.4	7	30,339,292 - 30,339,432	RGD	RGSC3.4
RGSC_v3.1	7	30,359,563 - 30,359,703	RGD
Celera	7	24,931,369 - 24,931,502	UniSTS
RH 3.4 Map	7	190.3	RGD
RH 3.4 Map	7	190.3	UniSTS
RH 2.0 Map	7	182.2	RGD
SHRSP x BN Map	7	20.65	RGD
FHH x ACI Map	7	8.92	RGD
Cytogenetic Map	7	q13	UniSTS

D7Rat214

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	27,828,921 - 27,829,070 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	34,147,005 - 34,147,153	NCBI	Rnor6.0
Rnor_5.0	7	34,212,168 - 34,212,316	UniSTS	Rnor5.0
RGSC_v3.4	7	30,339,264 - 30,339,413	RGD	RGSC3.4
RGSC_v3.4	7	30,339,265 - 30,339,413	UniSTS	RGSC3.4
RGSC_v3.1	7	30,359,536 - 30,359,684	RGD
Celera	7	24,931,341 - 24,931,483	UniSTS
RH 3.4 Map	7	187.4	UniSTS
RH 3.4 Map	7	187.4	RGD
RH 2.0 Map	7	186.7	RGD
SHRSP x BN Map	7	20.81	RGD
Cytogenetic Map	7	q13	UniSTS

RH128937

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	27,770,587 - 27,770,767 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	34,088,202 - 34,088,381	NCBI	Rnor6.0
Rnor_5.0	7	34,153,365 - 34,153,544	UniSTS	Rnor5.0
RGSC_v3.4	7	30,280,938 - 30,281,117	UniSTS	RGSC3.4
Celera	7	24,873,086 - 24,873,265	UniSTS
RH 3.4 Map	7	190.7	UniSTS
Cytogenetic Map	7	q13	UniSTS

RH143794

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	27,769,738 - 27,769,896 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	34,087,353 - 34,087,510	NCBI	Rnor6.0
Rnor_5.0	7	34,152,516 - 34,152,673	UniSTS	Rnor5.0
RGSC_v3.4	7	30,280,089 - 30,280,246	UniSTS	RGSC3.4
Celera	7	24,872,237 - 24,872,394	UniSTS
Cytogenetic Map	7	q13	UniSTS

BF419612

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	27,790,175 - 27,790,322 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	34,107,788 - 34,107,934	NCBI	Rnor6.0
Rnor_5.0	7	34,172,951 - 34,173,097	UniSTS	Rnor5.0
RGSC_v3.4	7	30,300,524 - 30,300,670	UniSTS	RGSC3.4
Celera	7	24,892,671 - 24,892,817	UniSTS
RH 3.4 Map	7	189.7	UniSTS
Cytogenetic Map	7	q13	UniSTS

RH139286

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	27,769,715 - 27,769,844 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	34,087,330 - 34,087,458	NCBI	Rnor6.0
Rnor_5.0	7	34,152,493 - 34,152,621	UniSTS	Rnor5.0
RGSC_v3.4	7	30,280,066 - 30,280,194	UniSTS	RGSC3.4
Celera	7	24,872,214 - 24,872,342	UniSTS
RH 3.4 Map	7	187.4	UniSTS
Cytogenetic Map	7	q13	UniSTS

AI703628

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	27,768,747 - 27,768,974 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	34,086,362 - 34,086,588	NCBI	Rnor6.0
Rnor_5.0	7	34,151,525 - 34,151,751	UniSTS	Rnor5.0
RGSC_v3.4	7	30,279,098 - 30,279,324	UniSTS	RGSC3.4
Celera	7	24,871,246 - 24,871,472	UniSTS
RH 3.4 Map	7	188.2	UniSTS
Cytogenetic Map	7	q13	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	40	21	6	19	6	2	2	33	30	34	11	2
Low	1	3	36	35		35	6	9	41	5	7		6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001838706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000005911 ⟹ ENSRNOP00000005911

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	27,768,599 - 27,804,084 (-)	Ensembl
Rnor_6.0 Ensembl	7	34,086,220 - 34,121,694 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106510 ⟹ ENSRNOP00000087126

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	27,772,447 - 27,804,082 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110645 ⟹ ENSRNOP00000090171

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	27,768,599 - 27,804,084 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117853 ⟹ ENSRNOP00000085081

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	27,768,599 - 27,804,081 (-)	Ensembl

RefSeq Acc Id:

NM_001108743 ⟹ NP_001102213

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	27,768,599 - 27,804,084 (-)	NCBI
Rnor_6.0	7	34,086,213 - 34,121,694 (-)	NCBI
Rnor_5.0	7	34,151,376 - 34,214,764 (-)	NCBI
RGSC_v3.4	7	30,278,949 - 30,314,430 (-)	RGD
Celera	7	24,871,097 - 24,906,573 (-)	RGD

Sequence:

show sequence

GGTATGGAGAGTGCAATCACCCTGTGGCAGTTCCTTTTGCACTTGCTGCTGGACCAGAAACATG
AGCACCTCATCTGCTGGACGTCTAACGATGGCGAGTTCAAACTCCTCAAGGCTGAAGAAGTGGC
CAAACTGTGGGGCCTCCGCAAGAACAAGACAAACATGAACTACGACAAGCTGAGCAGGGCTCTG
AGATACTATTACGACAAGAACATTATCAAGAAAGTGATCGGGCAGAAGTTTGTGTACAAGTTCG
TCTCTTTCCCGGATATCCTAAAAATGGATCCTCACGCGGTAGAGATCAGCCGGGAGAGCCTCCT
GCTGCAGGACAGCGACTGTAAGGTGTCCCCGGAAGGCCGAGAGATCCACAAGCACGGCTTGTCT
TCCCTCAAAAGCGCGAGCCGCAACGAATACATCCACTCAGGCCTGTACTCGTCCTTCACCATCA
ACTCCCTGCAGAACGCTCCAGAGGCCTTCAAGGCCATCAAGACAGAGAAGCTGGAGGAGCCATG
TGATGACAGCCCCCCTGTGGAAGAAGTCAGGACTGTGATCAGGTTTGTGACCAATAAAACCGAC
AAGCACATCACCAGGCCTGTGGTGTCCCTGCCTTCCACATCCGAGGCCGCCGCGGCGGCATCCG
CTTTCCTGGCCTCGTCTGTTTCAGCCAAGATCTCCTCTTTAATGTTGCCAAATGCTGCCAGCGT
TTCGTCTGCATCACCCTCTTCATCTCGGTCCCCATCCCTGTCCCCCAACTCTCCCCTCCCTTCC
GAACATAGAAGCCTCTTCCTGGAGGCAGCCTGCCATGACGCGGATTCTCTGGAGCCCCTAAATC
TGTCATCGGGCTCCAAAACCAAGTCTCCATCTCTTCCCCCAAAAGGCAAAAAACCCAAAGGCTT
GGAAATCTCCGCGCCCCAACTGTTGCTCTCCGGCACCGACATCGGCTCCATCGCCCTCAACAGC
CCAGCCCTCCCCTCAGGATCCCTCACTCCAGCTTTCTTCAGTGCACAGACGCCAAGTGGACTGC
TTCTGACCCCAAGTCCGCTGCTCCCCAGCATACATTTCTGGAGCAGCCTTAGTCCGGTCGCCCC
GCTGAGTCCCGCTAGGCTGCAAGGGCCAAACACACTTTTCCAGTTCCCCACACTGCTCAATGGT
CACATGCCCATGCCGCTCCCCAGTCTGGATAGAGCCCCATCTCCAGTACTGCTGTCCTCCAGCT
CTCAGAAATCATGATGACAGCCACCGCCACTGTCAGCGACTAAGGACTCACAGAACTGATGATG
CCAGTTTGTCCCTCTGGGCTAGTTTACCTGTGTCATGAGAAGGACGTCGTGAAACCCGGTCAAT
TTGGTTTGCACTTTTCATAACACGGATAATCTAGATGTATGTCACCATTTTAAAAGACGGTTTT
ATATATATATATATATATATATATATATATATATATATATATACATATATATATATATATATTT
CAGCTCTCTATGGAAGTCTGTTTTGCATCAAGTGGATTTTAATGTTTGTTTTTTATCCTGTTAG
CTCTGGAGTGTTGAACACTGACAGTGAGGAGCCTTTCTTAATGTTTTCAGTGTAACTAATAAGG
CTGTGAAGCTTTCTATCGCTTTAAATCTACATATGCTGAGCTCTGCTTGTATACACGGTATAAC
CAGCTGTGCCTTCCTTTGCATTTAGTTTTATGTACATGAACTTGTGTATTTCTAGTATTGAGAG
GAAATGTTTGAAGGACGCATTGGCATCAAACAGCTCTCAGTAGAGTGCTATTTTCTCACGTAGA
CACCATCAAAGTGTACTTCTATCACTAAGAACTGCCTTAGGACTTCTTTTGAACTGAAATCCAG
TAAATACAATGTCCAAGTAATGTTTTTATAAGAATGAACGAAGCCATATTTAGACAATAAACAT
TCTTTAAAGAACATGTTCCAAAGTGCATTTTTTAAAAGGAGAACTTTGAGAGGCCAGTGGCTTA
GTCATCTATAGAGGCCTTTCTAACCCCCCGGCAGAAGTCTGGGCTGCTAAGGCTATGTTAAGTC
CATGCCAGCCAAACTCTCGAGGGGACTTCCCAGGTTTGTGTTTAATTTAAAGACTAGCCCTGCC
TTCTTCATTTCCTACAACCACAGCCATCTGGGATCTTATCACTGCTGGGAGTTAAGGTTTCTTA
AGATTCCTGGCACGGCAATTAATATTTAAAACCTAATGTTGTAGGGCTGAGGACTTAGCTCAGT
AGAATGTGTGCCCTGCATGTGCTGAGGCAGTGGGTACAAACCCCAGGAATCTGTCTCCCTGCCT
CTCCCAAAGAGGGGGCTGGGAGACAAACTAAGAATGTTTTGGAGAGATGCTCACAGATGGCGAA
TTCAAACAAAGAAACGATTATATAATACCAGCTTTCTGTAGATATACTTCCTGTGTATAGGTAA
TTTTTGGTGGATTAAAGCAAAATGCGTTACTAAGATCTGGAGGAACTGAAAGCCTTGCTTCTCA
AGATGAGCGCCCGAGAGACACTGCTTTCTGTATTCAATTGGTGGCGAGAAGGAAGGCAATCCGA
TAAAGGAAAACTCTTCAGGAATCTCACTCTGAATCCGAGGCAGCAGCTCCTCGGATGCTCTGCA
GGGAAGGCTTCATGTGCCGTGGGTCAGGGCTGTGAAGGCGGCAGGCCCTCATCTGGTAAAACCC
AGAAGGTAGCAGCACATTTGTGCTTAAGGGGAAGTCCTGATGTAAGACTATGGACTCAAAGTGC
TTTCAATTTAAGATCAGGTGAGCTGAAACACTACTTATCCACAAGTAGTTAAAAAAAACCAAAA
ACAAAAACCAAAGTACAATTTGAAATGTGCCTCAACAGAATAGATAAATAACAAATCATAAGGG
GGCTAAAAAAAAGTTTATGCAAAAAAAATCTGAATTTTAAACAATTAAAATTATGTTTAGATAC
TTACAAATTGAGACTTAGTACCGGAATGGGACTATCTTTCTAAGGGGTGTGTGCTTACTAAGAG
AAGAGAAAAAGCCTCTGACTGTAAGGCCATGAAGACAGCTCCAAGCCCATAAATAGACACCCTG
CCACTCCCTCATGGCAAAGAATAAATGTGTACTAAAATAAAAAGGATCTGGTTCAGGGGACTAT
AATTACTGAACGCAGTGTCAGAGCTGGGAGGGGCTTTCAGAGGGCGTGCTTCCGCTGTTCTCCG
GTCAAGACAGGCCCACAGAACCAGGTGAGAGGCAGGGAGCGGCCTGGGGCCACAGCATTCACTG
AGGGTAGAGTGGGAGTGGTTCAACACCTACGGAAACATCAGGCTGGAGTGCTGAAAATTGCTTG
ATGAGGGTGCGTTTGATATGCAAGATTCTTAGGAAGGAACAAGGAGTGTGCAGGAATCTCAACA
GAATGACTTTTTGTAGACTTTTAAACTATAAATGCTGGCTGGAAATGTTCATGTGACTGTAAGT
CTGCCTGCTGTTTCCTTGTCCTCCAATTACTGTGATTATCCTGTATTCTAGATACACTGTGTCA
TTCTTGGTGAGTCCAAATACTCAAGGGAGAACTGAAGATGGAGAATAACAGCTTCGCCGTCTTC
TGTGTTTTTAACAGGATTAATTTAGCCAGAAAATAGGCTGCAAAAAGCATCCCCGGCTCTTATG
CTTGCTTAATCAGTGTTCAGCTGCTGCAGCTGCCGTTGGAGCTCTAGAACCTCACTGTGGAAGC
TGAACTCAGTCCCTGCGCAGCTTCCCTACAGCTGAGAAGCTTCCTCCGCTGCCACATGGGTGTC
GTTTTTTTACTGTCATATTGTTTTGTTGAATAAATACTTTGTAATAAAA

hide sequence

RefSeq Acc Id:

XM_006241265 ⟹ XP_006241327

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	27,768,582 - 27,831,087 (-)	NCBI
Rnor_6.0	7	34,088,103 - 34,149,601 (-)	NCBI
Rnor_5.0	7	34,151,376 - 34,214,764 (-)	NCBI

Sequence:

show sequence

GGGGCGTGCGGGCGGACGCGGGGCCCGGCGCCGGGGGTATGCGCGGGTCTGGGCGGGCAGCCCG
GGCGCACAGCCGCGGCCGGGGCGCACGGCGCGGGGCGGAAAAGCCTGTTTACACAGACTGCACA
CCGCCTGGGGAATAATGCAGTAAAGGAAGTGAGCAGGCTCGGCCTGACTGCTCCAACTTCCTGC
TCTCACACACACCAGAGGGGGGGTGGGGGGAGGGAGAAAAAAAAAAAAAAGAGGAGCGAGAGAA
AGAAAAAAAAAGAGGGGGGAAAATCAGGATCTCATTACAAGAGCAACAGACCGTCTGCAGACGC
CTGTCAGCATGGAAAGTCGGGGGCTTTCGCCCGGGTCCTCCTAGAAATCTCCCCAAGAAGACTC
CCAAACGCTCCCCCACATCTGGGTATGGAGAGTGCAATCACCCTGTGGCAGTTCCTTTTGCACT
TGCTGCTGGACCAGAAACATGAGCACCTCATCTGCTGGACGTCTAACGATGGCGAGTTCAAACT
CCTCAAGGCTGAAGAAGTGGCCAAACTGTGGGGCCTCCGCAAGAACAAGACAAACATGAACTAC
GACAAGCTGAGCAGGGCTCTGAGATACTATTACGACAAGAACATTATCAAGAAAGTGATCGGGC
AGAAGTTTGTGTACAAGTTCGTCTCTTTCCCGGATATCCTAAAAATGGATCCTCACGCGGTAGA
GATCAGCCGGGAGAGCCTCCTGCTGCAGGACAGCGACTGTAAGGTGTCCCCGGAAGGCCGAGAG
ATCCACAAGCACGGCTTGTCTTCCCTCAAAAGCGCGAGCCGCAACGAATACATCCACTCAGGCC
TGTACTCGTCCTTCACCATCAACTCCCTGCAGAACGCTCCAGAGGCCTTCAAGGCCATCAAGAC
AGAGAAGCTGGAGGAGCCATGTGATGACAGCCCCCCTGTGGAAGAAGTCAGGACTGTGATCAGG
TTTGTGACCAATAAAACCGACAAGCACATCACCAGGCCTGTGGTGTCCCTGCCTTCCACATCCG
AGGCCGCCGCGGCGGCATCCGCTTTCCTGGCCTCGTCTGTTTCAGCCAAGATCTCCTCTTTAAT
GTTGCCAAATGCTGCCAGCGTTTCGTCTGCATCACCCTCTTCATCTCGGTCCCCATCCCTGTCC
CCCAACTCTCCCCTCCCTTCCGAACATAGAAGCCTCTTCCTGGAGGCAGCCTGCCATGACGCGG
ATTCTCTGGAGCCCCTAAATCTGTCATCGGGCTCCAAAACCAAGTCTCCATCTCTTCCCCCAAA
AGGCAAAAAACCCAAAGGCTTGGAAATCTCCGCGCCCCAACTGTTGCTCTCCGGCACCGACATC
GGCTCCATCGCCCTCAACAGCCCAGCCCTCCCCTCAGGATCCCTCACTCCAGCTTTCTTCAGTG
CACAGACGCCAAGTGGACTGCTTCTGACCCCAAGTCCGCTGCTCCCCAGCATACATTTCTGGAG
CAGCCTTAGTCCGGTCGCCCCGCTGAGTCCCGCTAGGCTGCAAGGGCCAAACACACTTTTCCAG
TTCCCCACACTGCTCAATGGTCACATGCCCATGCCGCTCCCCAGTCTGGATAGAGCCCCATCTC
CAGTACTGCTGTCCTCCAGCTCTCAGAAATCATGATGACAGCCACCGCCACTGTCAGCGACTAA
GGACTCACAGAACTGATGATGCCAGTTTGTCCCTCTGGGCTAGTTTACCTGTGTCATGAGAAGG
ACGTCGTGAAACCCGGTCAATTTGGTTTGCACTTTTCATAACACGGATAATCTAGATGTATGTC
ACCATTTTAAAAGACGGTTTTATATATATATATATATATATATATATATATATATATATATATA
CATATATATATATATATATTTCAGCTCTCTATGGAAGTCTGTTTTGCATCAAGTGGATTTTAAT
GTTTGTTTTTTATCCTGTTAGCTCTGGAGTGTTGAACACTGACAGTGAGGAGCCTTTCTTAATG
TTTTCAGTGTAACTAATAAGGCTGTGAAGCTTTCTATCGCTTTAAATCTACATATGCTGAGCTC
TGCTTGTATACACGGTATAACCAGCTGTGCCTTCCTTTGCATTTAGTTTTATGTACATGAACTT
GTGTATTTCTAGTATTGAGAGGAAATGTTTGAAGGACGCATTGGCATCAAACAGCTCTCAGTAG
AGTGCTATTTTCTCACGTAGACACCATCAAAGTGTACTTCTATCACTAAGAACTGCCTTAGGAC
TTCTTTTGAACTGAAATCCAGTAAATACAATGTCCAAGTAATGTTTTTATAAGAATGAACGAAG
CCATATTTAGACAATAAACATTCTTTAAAGAACATG

hide sequence

RefSeq Acc Id:

XM_039079440 ⟹ XP_038935368

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	27,768,582 - 27,831,088 (-)	NCBI

RefSeq Acc Id:

XR_001838706

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	27,768,582 - 27,831,086 (-)	NCBI
Rnor_6.0	7	34,087,237 - 34,149,601 (-)	NCBI

Sequence:

show sequence

GGGGCGTGCGGGCGGACGCGGGGCCCGGCGCCGGGGGTATGCGCGGGTCTGGGCGGGCAGCCCG
GGCGCACAGCCGCGGCCGGGGCGCACGGCGCGGGGCGGAAAAGCCTGTTTACACAGACTGCACA
CCGCCTGGGGAATAATGCAGTAAAGGAAGTGAGCAGGCTCGGCCTGACTGCTCCAACTTCCTGC
TCTCACACACACCAGAGGGGGGGTGGGGGGAGGGAGAAAAAAAAAAAAAAGAGGAGCGAGAGAA
AGAAAAAAAAAGAGGGGGGAAAATCAGGATCTCATTACAAGAGCAACAGACCGTCTGCAGACGC
CTGTCAGCATGGAAAGTCGGGGGCTTTCGCCCGGGTCCTCCTAGAAATCTCCCCAAGAAGACTC
CCAAACGCTCCCCCACATCTGGGTATGGAGAGTGCAATCACCCTGTGGCAGTTCCTTTTGCACT
TGCTGCTGGACCAGAAACATGAGCACCTCATCTGCTGGACGTCTAACGATGGCGAGTTCAAACT
CCTCAAGGCTGAAGAAGTGGCCAAACTGTGGGGCCTCCGCAAGAACAAGACAAACATGAACTAC
GACAAGCTGAGCAGGGCTCTGAGATACTATTACGACAAGAACATTATCAAGAAAGTGATCGGGC
AGAAGTTTGTGTACAAGTTCGTCTCTTTCCCGGATATCCTAAAAATGGATCCTCACGCGGTAGA
GATCAGCCGGGAGAGCCTCCTGCTGCAGGACAGCGACTGTAAGGTGTCCCCGGAAGGCCGAGAG
ATCCACAAGCACGGCTTGTCTTCCCTCAAAAGCGCGAGCCGCAACGAATACATCCACTCAGGCC
TGTACTCGTCCTTCACCATCAACTCCCTGCAGAACGCTCCAGAGGCCTTCAAGGCCATCAAGAC
AGAGAAGCTGGAGGAGCCATGTGATGACAGCCCCCCTGTGGAAGAAGTCAGGACTGTGATCAGG
CAAAAAACCCAAAGGCTTGGAAATCTCCGCGCCCCAACTGTTGCTCTCCGGCACCGACATCGGC
TCCATCGCCCTCAACAGCCCAGCCCTCCCCTCAGGATCCCTCACTCCAGCTTTCTTCAGTGCAC
AGACGCCAAGTGGACTGCTTCTGACCCCAAGTCCGCTGCTCCCCAGCATACATTTCTGGAGCAG
CCTTAGTCCGGTCGCCCCGCTGAGTCCCGCTAGGCTGCAAGGGCCAAACACACTTTTCCAGTTC
CCCACACTGCTCAATGGTCACATGCCCATGCCGCTCCCCAGTCTGGATAGAGCCCCATCTCCAG
TACTGCTGTCCTCCAGCTCTCAGAAATCATGATGACAGCCACCGCCACTGTCAGCGACTAAGGA
CTCACAGAACTGATGATGCCAGTTTGTCCCTCTGGGCTAGTTTACCTGTGTCATGAGAAGGACG
TCGTGAAACCCGGTCAATTTGGTTTGCACTTTTCATAACACGGATAATCTAGATGTATGTCACC
ATTTTAAAAGACGGTTTTATATATATATATATATATATATATATATATATATATATATATACAT
ATATATATATATATATTTCAGCTCTCTATGGAAGTCTGTTTTGCATCAAGTGGATTTTAATGTT
TGTTTTTTATCCTGTTAGCTCTGGAGTGTTGAACACTGACAGTGAGGAGCCTTTCTTAATGTTT
TCAGTGTAACTAATAAGGCTGTGAAGCTTTCTATCGCTTTAAATCTACATATGCTGAGCTCTGC
TTGTATACACGGTATAACCAGCTGTGCCTTCCTTTGCATTTAGTTTTATGTACATGAACTTGTG
TATTTCTAGTATTGAGAGGAAATGTTTGAAGGACGCATTGGCATCAAACAGCTCTCAGTAGAGT
GCTATTTTCTCACGTAGACACCATCAAAGTGTACTTCTATCACTAAGAACTGCCTTAGGACTTC
TTTTGAACTGAAATCCAGTAAATACAATGTCCAAGTAATGTTTTTATAAGAATGAACGAAGCCA
TATTTAGACAATAAACATTCTTTAAAGAACATGTTCCAAAGTGCATTTTTTAAAAGGAGAACTT
TGAGAGGCCAGTGGCTTAGTCATCTATAGAGGCCTTTCTAACCCCCCGGCAGAAGTCTGGGCTG
CTAAGGCTATGTTAAGTCCATGCCAGCCAAACTCTCGAGGGGACTTCCCAGGTTTGTGTTTAAT
TTAAAGACTAGCCCTGCCTTCTTCATTTCCTACAACCACAGCCATCTGGGATCTTATCACTGCT
GGGAGTTAAGGTTTCTTAAGATTCCTGGCACGGCAATTAATATTTAAAACCTAATGTTGTAGGG
CTGAGGACTTAGCTCAGTAGAATGTGTGCCCTGCATGTGCTGAGGCAGTGGGTACAAACCCCAG
GAATCTGTCTCCCTGCCTCTCCCAAAGAGGGGGCTGGGAGACAAACTAAGAATGTTTTGGAGAG
ATGCTCACAGATGGCGAATTCAAACAAAGAAACGATTATATAATACCAGCTTTCTGTAGATATA
CTTCCTGTGTATAGGTAATTTTTGGTGGATTAAAGCAAAATGCGTTACTAAGATCTGGAGGAAC
TGAAAGCCTTGCTTCTCAAGATGAGCGCCCGAGAGACACTGCTTTCTGTATTCAATTGGTGGCG
AGAAGGAAGGCAATCCGATAAAGGAAAACTCTTCAGGAATCTCACTCTGAATCCGAGGCAGCAG
CTCCTCGGATGCTCTGCAGGGAAGGCTTCATGTGCCGTGGGTCAGGGCTGTGAAGGCGGCAGGC
CCTCATCTGGTAAAACCCAGAAGGTAGCAGCACATTTGTGCTTAAGGGGAAGTCCTGATGTAAG
ACTATGGACTCAAAGTGCTTTCAATTTAAGATCAGGTGAGCTGAAACACTACTTATCCACAAGT
AGT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102213	(Get FASTA)	NCBI Sequence Viewer
	XP_006241327	(Get FASTA)	NCBI Sequence Viewer
	XP_038935368	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM16917	(Get FASTA)	NCBI Sequence Viewer
	EDM16918	(Get FASTA)	NCBI Sequence Viewer
	EDM16919	(Get FASTA)	NCBI Sequence Viewer
	EDM16920	(Get FASTA)	NCBI Sequence Viewer
	EDM16921	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001102213 ⟸ NM_001108743

- UniProtKB:

D4A9V6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MESAITLWQFLLHLLLDQKHEHLICWTSNDGEFKLLKAEEVAKLWGLRKNKTNMNYDKLSRALR
YYYDKNIIKKVIGQKFVYKFVSFPDILKMDPHAVEISRESLLLQDSDCKVSPEGREIHKHGLSS
LKSASRNEYIHSGLYSSFTINSLQNAPEAFKAIKTEKLEEPCDDSPPVEEVRTVIRFVTNKTDK
HITRPVVSLPSTSEAAAAASAFLASSVSAKISSLMLPNAASVSSASPSSSRSPSLSPNSPLPSE
HRSLFLEAACHDADSLEPLNLSSGSKTKSPSLPPKGKKPKGLEISAPQLLLSGTDIGSIALNSP
ALPSGSLTPAFFSAQTPSGLLLTPSPLLPSIHFWSSLSPVAPLSPARLQGPNTLFQFPTLLNGH
MPMPLPSLDRAPSPVLLSSSSQKS

hide sequence

RefSeq Acc Id:	XP_006241327 ⟸ XM_006241265
- Peptide Label:	isoform X1
- UniProtKB:	D4A9V6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESAITLWQFLLHLLLDQKHEHLICWTSNDGEFKLLKAEEVAKLWGLRKNKTNMNYDKLSRALR YYYDKNIIKKVIGQKFVYKFVSFPDILKMDPHAVEISRESLLLQDSDCKVSPEGREIHKHGLSS LKSASRNEYIHSGLYSSFTINSLQNAPEAFKAIKTEKLEEPCDDSPPVEEVRTVIRFVTNKTDK HITRPVVSLPSTSEAAAAASAFLASSVSAKISSLMLPNAASVSSASPSSSRSPSLSPNSPLPSE HRSLFLEAACHDADSLEPLNLSSGSKTKSPSLPPKGKKPKGLEISAPQLLLSGTDIGSIALNSP ALPSGSLTPAFFSAQTPSGLLLTPSPLLPSIHFWSSLSPVAPLSPARLQGPNTLFQFPTLLNGH MPMPLPSLDRAPSPVLLSSSSQKS hide sequence

RefSeq Acc Id:

ENSRNOP00000005911 ⟸ ENSRNOT00000005911

RefSeq Acc Id:	XP_038935368 ⟸ XM_039079440
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSRNOP00000087126 ⟸ ENSRNOT00000106510

RefSeq Acc Id:

ENSRNOP00000090171 ⟸ ENSRNOT00000110645

RefSeq Acc Id:

ENSRNOP00000085081 ⟸ ENSRNOT00000117853

Protein Domains

ETS

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A9V6-F1-model_v2	AlphaFold	D4A9V6	1-408	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307764	AgrOrtholog
BioCyc Gene	G2FUF-34403	BioCyc
Ensembl Genes	ENSRNOG00000004367	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000005911	ENTREZGENE
	ENSRNOP00000005911.4	UniProtKB/TrEMBL
	ENSRNOP00000085081.1	UniProtKB/TrEMBL
	ENSRNOP00000087126.1	UniProtKB/TrEMBL
	ENSRNOP00000090171.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005911	ENTREZGENE
	ENSRNOT00000005911.7	UniProtKB/TrEMBL
	ENSRNOT00000106510.1	UniProtKB/TrEMBL
	ENSRNOT00000110645	ENTREZGENE
	ENSRNOT00000110645.1	UniProtKB/TrEMBL
	ENSRNOT00000117853.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
InterPro	Ets	UniProtKB/TrEMBL
	ETS_fam	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
KEGG Report	rno:362871	UniProtKB/TrEMBL
NCBI Gene	362871	ENTREZGENE
PANTHER	ETS DOMAIN-CONTAINING PROTEIN ELK-3	UniProtKB/TrEMBL
	PTHR11849	UniProtKB/TrEMBL
Pfam	Ets	UniProtKB/TrEMBL
PhenoGen	Elk3	PhenoGen
PRINTS	ETSDOMAIN	UniProtKB/TrEMBL
PROSITE	ETS_DOMAIN_1	UniProtKB/TrEMBL
	ETS_DOMAIN_2	UniProtKB/TrEMBL
	ETS_DOMAIN_3	UniProtKB/TrEMBL
SMART	ETS	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
UniProt	A0A8I6ADA1_RAT	UniProtKB/TrEMBL
	A0A8I6AFZ2_RAT	UniProtKB/TrEMBL
	A0A8I6GBJ9_RAT	UniProtKB/TrEMBL
	D4A9V6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-10	Elk3	ETS transcription factor ELK3	Elk3	ELK3, ETS transcription factor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2017-03-07	Elk3	ELK3, ETS transcription factor	Elk3	ELK3, ETS-domain protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-02-26	Elk3	ELK3, ETS-domain protein	Elk3	ELK3, member of ETS oncogene family	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-02-22	Elk3	ELK3, member of ETS oncogene family	Elk3	ELK3, ETS-domain protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Elk3	ELK3, member of ETS oncogene family	Elk3_predicted	ELK3, member of ETS oncogene family (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Elk3_predicted	ELK3, member of ETS oncogene family (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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