Plxnc1 (plexin C1) - Rat Genome Database

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Gene: Plxnc1 (plexin C1) Rattus norvegicus
Analyze
Symbol: Plxnc1
Name: plexin C1
RGD ID: 1307420
Description: Predicted to enable semaphorin receptor activity. Predicted to be involved in several processes, including positive regulation of axonogenesis; regulation of cell shape; and regulation of synapse pruning. Predicted to be located in membrane. Predicted to be part of semaphorin receptor complex. Predicted to be active in cerebellar climbing fiber to Purkinje cell synapse. Orthologous to human PLXNC1 (plexin C1); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362873; plexin-C1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8731,276,978 - 31,430,823 (-)NCBIGRCr8
mRatBN7.2729,390,038 - 29,543,985 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl729,390,048 - 29,543,779 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0735,848,083 - 36,000,969 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl735,850,398 - 36,000,906 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0735,912,101 - 36,063,768 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4731,984,866 - 32,137,758 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1732,007,444 - 32,157,845 (-)NCBI
Celera726,469,439 - 26,621,620 (-)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
3,3',5-triiodo-L-thyronine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
clobetasol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
diethyl malate  (ISO)
dimethylarsinic acid  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
leflunomide  (ISO)
maneb  (ISO)
mercury dibromide  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylarsonic acid  (ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
PCB138  (ISO)
pentanal  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17727705   PMID:19946888   PMID:28765893  


Genomics

Comparative Map Data
Plxnc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8731,276,978 - 31,430,823 (-)NCBIGRCr8
mRatBN7.2729,390,038 - 29,543,985 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl729,390,048 - 29,543,779 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0735,848,083 - 36,000,969 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl735,850,398 - 36,000,906 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0735,912,101 - 36,063,768 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4731,984,866 - 32,137,758 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1732,007,444 - 32,157,845 (-)NCBI
Celera726,469,439 - 26,621,620 (-)NCBICelera
Cytogenetic Map7q13NCBI
PLXNC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381294,148,577 - 94,307,675 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1294,148,577 - 94,307,675 (+)EnsemblGRCh38hg38GRCh38
GRCh371294,542,353 - 94,701,451 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361293,066,630 - 93,223,356 (+)NCBINCBI36Build 36hg18NCBI36
Build 341293,044,966 - 93,201,693NCBI
Celera1294,213,729 - 94,370,485 (+)NCBICelera
Cytogenetic Map12q22NCBI
HuRef1291,610,270 - 91,768,612 (+)NCBIHuRef
CHM1_11294,507,552 - 94,666,454 (+)NCBICHM1_1
T2T-CHM13v2.01294,129,732 - 94,288,500 (+)NCBIT2T-CHM13v2.0
Plxnc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391094,626,728 - 94,780,875 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1094,626,728 - 94,780,697 (-)EnsemblGRCm39 Ensembl
GRCm381094,790,866 - 94,945,015 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1094,790,866 - 94,944,835 (-)EnsemblGRCm38mm10GRCm38
MGSCv371094,253,611 - 94,407,212 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361094,222,985 - 94,374,266 (-)NCBIMGSCv36mm8
Celera1096,763,537 - 96,917,770 (-)NCBICelera
Cytogenetic Map10C2NCBI
cM Map1049.09NCBI
Plxnc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540530,885,278 - 31,021,544 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540530,885,277 - 31,023,947 (+)NCBIChiLan1.0ChiLan1.0
PLXNC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210102,194,435 - 102,352,972 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112102,190,829 - 102,349,366 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01291,694,449 - 91,852,950 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11295,092,467 - 95,251,251 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1295,093,332 - 95,251,249 (+)Ensemblpanpan1.1panPan2
PLXNC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11534,279,880 - 34,417,134 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1534,279,932 - 34,417,720 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1534,730,384 - 34,867,603 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01534,943,288 - 35,080,504 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1534,942,721 - 35,079,123 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11534,216,942 - 34,354,115 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01534,306,467 - 34,443,602 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01534,575,260 - 34,712,431 (+)NCBIUU_Cfam_GSD_1.0
Plxnc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494525,564,925 - 25,709,461 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650710,525,975 - 10,670,514 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650710,525,975 - 10,670,511 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLXNC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl588,900,234 - 89,055,924 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1588,900,238 - 89,055,837 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2593,325,725 - 93,459,846 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLXNC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11189,549,312 - 89,701,890 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037155,455,641 - 155,614,944 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plxnc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475012,641,674 - 12,777,702 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475012,639,292 - 12,777,237 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Plxnc1
1115 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:37
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000011178
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)72940968353612950Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat

Markers in Region
D7Rat27  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2729,409,683 - 29,409,863 (+)MAPPERmRatBN7.2
Rnor_6.0735,867,729 - 35,867,908NCBIRnor6.0
Rnor_5.0735,931,747 - 35,931,926UniSTSRnor5.0
RGSC_v3.4732,004,505 - 32,004,684UniSTSRGSC3.4
RGSC_v3.4732,004,504 - 32,004,684RGDRGSC3.4
RGSC_v3.1732,024,776 - 32,024,955RGD
Celera726,489,080 - 26,489,243UniSTS
RH 3.4 Map7230.5RGD
RH 3.4 Map7230.5UniSTS
RH 2.0 Map7203.7RGD
SHRSP x BN Map722.05RGD
FHH x ACI Map712.22RGD
Cytogenetic Map7q13UniSTS
WI-14237  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2729,390,069 - 29,390,198 (+)MAPPERmRatBN7.2
Rnor_6.0735,848,114 - 35,848,242NCBIRnor6.0
Rnor_5.0735,912,132 - 35,912,260UniSTSRnor5.0
RGSC_v3.4731,984,890 - 31,985,018UniSTSRGSC3.4
Celera726,469,470 - 26,469,598UniSTS
Cytogenetic Map7q13UniSTS
RH132911  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2729,391,694 - 29,391,887 (+)MAPPERmRatBN7.2
Rnor_6.0735,849,739 - 35,849,931NCBIRnor6.0
Rnor_5.0735,913,757 - 35,913,949UniSTSRnor5.0
RGSC_v3.4731,986,515 - 31,986,707UniSTSRGSC3.4
Celera726,471,095 - 26,471,287UniSTS
RH 3.4 Map7232.5UniSTS
Cytogenetic Map7q13UniSTS
BE102511  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2729,532,910 - 29,533,060 (+)MAPPERmRatBN7.2
Rnor_6.0735,990,413 - 35,990,562NCBIRnor6.0
Rnor_5.0736,053,234 - 36,053,383UniSTSRnor5.0
RGSC_v3.4732,127,081 - 32,127,230UniSTSRGSC3.4
Celera726,611,104 - 26,611,253UniSTS
RH 3.4 Map7232.5UniSTS
Cytogenetic Map7q13UniSTS
BE117374  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2729,390,089 - 29,390,302 (+)MAPPERmRatBN7.2
Rnor_6.0735,848,134 - 35,848,346NCBIRnor6.0
Rnor_5.0735,912,152 - 35,912,364UniSTSRnor5.0
RGSC_v3.4731,984,910 - 31,985,122UniSTSRGSC3.4
Celera726,469,490 - 26,469,702UniSTS
RH 3.4 Map7232.2UniSTS
Cytogenetic Map7q13UniSTS
BF390429  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2729,520,860 - 29,521,012 (+)MAPPERmRatBN7.2
Rnor_6.0735,978,348 - 35,978,499NCBIRnor6.0
Rnor_5.0736,041,582 - 36,041,733UniSTSRnor5.0
RGSC_v3.4732,115,748 - 32,115,899UniSTSRGSC3.4
Celera726,599,244 - 26,599,395UniSTS
RH 3.4 Map7232.5UniSTS
Cytogenetic Map7q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 10 11 4 18 4 74 24 1
Low 2 31 44 35 1 35 8 8 31 17 10 8
Below cutoff 2 2 2 2 3 4

Sequence


RefSeq Acc Id: ENSRNOT00000011178   ⟹   ENSRNOP00000011178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl729,390,048 - 29,543,779 (-)Ensembl
Rnor_6.0 Ensembl735,850,398 - 36,000,906 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000102613   ⟹   ENSRNOP00000081399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl729,390,048 - 29,543,779 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106534   ⟹   ENSRNOP00000078419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl729,390,048 - 29,543,779 (-)Ensembl
RefSeq Acc Id: NM_001426988   ⟹   NP_001413917
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,276,978 - 31,430,605 (-)NCBI
RefSeq Acc Id: XM_039080100   ⟹   XP_038936028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,276,981 - 31,430,761 (-)NCBI
mRatBN7.2729,390,039 - 29,543,985 (-)NCBI
RefSeq Acc Id: XM_039080101   ⟹   XP_038936029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,279,859 - 31,430,761 (-)NCBI
mRatBN7.2729,392,489 - 29,543,985 (-)NCBI
RefSeq Acc Id: XM_039080102   ⟹   XP_038936030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,276,981 - 31,391,871 (-)NCBI
mRatBN7.2729,390,038 - 29,504,946 (-)NCBI
RefSeq Acc Id: XM_039080103   ⟹   XP_038936031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,276,981 - 31,390,137 (-)NCBI
mRatBN7.2729,390,038 - 29,503,186 (-)NCBI
RefSeq Acc Id: XM_063263772   ⟹   XP_063119842
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,296,224 - 31,430,823 (-)NCBI
RefSeq Acc Id: XR_005486861
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,285,556 - 31,430,820 (-)NCBI
mRatBN7.2729,398,472 - 29,543,985 (-)NCBI
RefSeq Acc Id: ENSRNOP00000011178   ⟸   ENSRNOT00000011178
RefSeq Acc Id: XP_038936030   ⟸   XM_039080102
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038936031   ⟸   XM_039080103
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038936028   ⟸   XM_039080100
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038936029   ⟸   XM_039080101
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000081399   ⟸   ENSRNOT00000102613
RefSeq Acc Id: ENSRNOP00000078419   ⟸   ENSRNOT00000106534
RefSeq Acc Id: NP_001413917   ⟸   NM_001426988
- Peptide Label: precursor
- UniProtKB: A0A8I5ZKT8 (UniProtKB/TrEMBL),   D4A7M0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119842   ⟸   XM_063263772
- Peptide Label: isoform X3
Protein Domains
Sema

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A7M0-F1-model_v2 AlphaFold D4A7M0 1-1574 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307420 AgrOrtholog
BioCyc Gene G2FUF-34354 BioCyc
Ensembl Genes ENSRNOG00000007970 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011178.7 UniProtKB/TrEMBL
  ENSRNOT00000102613.1 UniProtKB/TrEMBL
  ENSRNOT00000106534.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  ligand-binding face of the semaphorins, domain 2 UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/TrEMBL
  IPT_TIG_rcpt UniProtKB/TrEMBL
  Plexin UniProtKB/TrEMBL
  Plexin-C1_Sema UniProtKB/TrEMBL
  Plexin-like_fold UniProtKB/TrEMBL
  Plexin_cytoplasmic_RasGAP_dom UniProtKB/TrEMBL
  Plexin_RBD UniProtKB/TrEMBL
  Plexin_repeat UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/TrEMBL
  Semaphorin/CD100_Ag UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
NCBI Gene 362873 ENTREZGENE
PANTHER PLEXIN-C1 UniProtKB/TrEMBL
  PTHR22625 UniProtKB/TrEMBL
Pfam Plexin_cytopl UniProtKB/TrEMBL
  Plexin_RBD UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  TIG UniProtKB/TrEMBL
PhenoGen Plxnc1 PhenoGen
PROSITE SEMA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007970 RatGTEx
SMART IPT UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
Superfamily-SCOP Plexin repeat UniProtKB/TrEMBL
  Rho_GAP UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
UniProt A0A8I5ZKT8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZS48_RAT UniProtKB/TrEMBL
  D4A7M0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Plxnc1  plexin C1   Plxnc1_predicted  plexin C1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Plxnc1_predicted  plexin C1 (predicted)      Symbol and Name status set to approved 70820 APPROVED