D7Got80 Marker Search Result - Rat Genome Database

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Marker: D7Got80

Symbol: D7Got80
Previously known as: oxsts2477; OT79.44; 
RGD ID: 44257
Expected Size: 171 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2750,032,914 - 50,033,085 (+)MAPPERmRatBN7.2
Rnor_6.0757,340,069 - 57,340,239NCBIRnor6.0
Rnor_5.0757,352,464 - 57,352,634UniSTSRnor5.0
RGSC_v3.4753,679,915 - 53,680,086RGDRGSC3.4
RGSC_v3.4753,679,916 - 53,680,086UniSTSRGSC3.4
RGSC_v3.1753,700,549 - 53,700,719RGD
Celera746,827,288 - 46,827,458UniSTS
RH 3.4 Map7440.1UniSTS
RH 3.4 Map7440.1RGD
RH 2.0 Map7403.5RGD
Cytogenetic Map7q22UniSTS
Is Marker For: Genes:   Trhde  




#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. UniSTS Pipeline RGD automated pipelines
4. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
5. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer TGGGTATTCAACAACCCCAC
Reverse Primer AATGATGAGATTGCATGCAGG
 


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
728895Trhdethyrotropin-releasing hormone degrading enzyme74994327150350613Rat
GenBank Nucleotide AU026880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH616004.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 41 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat

1 to 10 of 41 rows


Database
Acc Id
Source(s)
NCBI Gene 366894 UniSTS