Vencon3 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Vencon3 (Ventilatory control QTL 3) Rattus norvegicus

Symbol: Vencon3
Name: Ventilatory control QTL 3
RGD ID: 2303629
Trait: respiration trait   (VT:0001943)    
Measurement Type: respiration rate   (CMO:0000289)    
LOD Score: 7.25
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2741,109,692 - 56,793,354RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0747,895,099 - 63,372,754RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0747,909,781 - 63,596,644RGDRnor5.0
RGSC_v3.4744,462,790 - 60,576,660RGDRGSC3.4
Cross Type: intercross
Strains Crossed: SD/HsdCwr BN/HsdMcwiCwr 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
respiration rate  IDA 2303609 RGD 

Experimental Condition
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
controlled air oxygen content  IDA 2303609 RGD 

Measurement Method
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
air displacement plethysmography  IDA 2303609 RGD 

Rat Strain
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
BN/HsdMcwiCwr  IEA 2303609 RGD 
SD/HsdCwr  IEA 2303609 RGD 

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
respiration trait  IDA 2303609 RGD 

Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BN/HsdMcwiCwr  (IEA)
SD/HsdCwr  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Data registered by Dr. Moreno Personal communication between Dr. Carol Moreno and the RGD curators.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
69065Pawrpro-apoptotic WT1 regulator74364502843725033Rat
71094Nap1l1nucleosome assembly protein 1-like 174693327846957853Rat
619774Wif1Wnt inhibitory factor 175654806056618364Rat
61950Csrp2cysteine and glycine-rich protein 274634910946367743Rat
2866Ifnginterferon gamma75390333953907375Rat
3026Lyz2lysozyme 275290681052912154Rat
3134Myf6myogenic factor 674281300842814852Rat
3803Syt1synaptotagmin 174381320444358020Rat
3836Phlda1pleckstrin homology-like domain, family A, member 174696743346969637Rat
621667Grip1glutamate receptor interacting protein 175493485655592274Rat
631332Tph2tryptophan hydroxylase 275068569450789424Rat
620650Rab3ipRAB3A interacting protein75253146152575295Rat
628829Kcnc2potassium voltage-gated channel subfamily C member 274770003547883979Rat
620728Kcnmb4potassium calcium-activated channel subfamily M regulatory beta subunit 475206614552119098Rat
620013Ppp1r12aprotein phosphatase 1, regulatory subunit 12A74348280843593689Rat
620577Rap1bRAP1B, member of RAS oncogene family75342303953456349Rat
621256Lin7alin-7 homolog A, crumbs cell polarity complex component74258670442742609Rat
620780Ptprrprotein tyrosine phosphatase, receptor type, R75166259551929605Rat
621160Nup107nucleoporin 10775335374053398345Rat
620479Cand1cullin-associated and neddylation-dissociated 175468111454719002Rat
620779Ptprqprotein tyrosine phosphatase, receptor type, Q74283445543016807Rat
728895Trhdethyrotropin-releasing hormone degrading enzyme74994327150350613Rat
620617Hmga2high mobility group AT-hook 275587714555998813Rat
1303150Rab21RAB21, member RAS oncogene family75090405050928890Rat
1307051Acss3acyl-CoA synthetase short-chain family member 374224126142450209Rat
735173Tmbim4transmembrane BAX inhibitor motif containing 475571869055733277Rat
621783Tspan8tetraspanin 875144494651479360Rat
735209Tmem19transmembrane protein 1975095888450985601Rat
1304640Cpsf6cleavage and polyadenylation specific factor 675295658953001783Rat
1305255Tbc1d30TBC1 domain family, member 3075677957056869092Rat
1305439Best3bestrophin 375258682452656776Rat
1306474RGD1306474similar to RIKEN cDNA 9530003J2375287584252880716Rat
1305741Yeats4YEATS domain containing 475285831352865454Rat
1306259Nav3neuron navigator 374505220645840471Rat
1306282Tmem186l1transmembrane protein 186l175355337853570587Rat
1306287Zfc3h1zinc finger, C3H1-type containing75100825151064666Rat
1305021Ppfia2PTPRF interacting protein alpha 274176571642240104Rat
1307358Lrrc10leucine-rich repeat-containing 1075268697252688369Rat
1305332Mdm2MDM2 proto-oncogene75329066053315205Rat
1307733Lgr5leucine rich repeat containing G protein coupled receptor 575108705951221882Rat
1305922Ptprbprotein tyrosine phosphatase, receptor type, B75195337552034751Rat
1310205Glipr1l2GLIPR1 like 274753300947546737Rat
1312039Dyrk2dual specificity tyrosine phosphorylation regulated kinase 275434872454381363Rat
1308322Myf5myogenic factor 574280294642806177Rat
1305978Glipr1GLI pathogenesis-related 174748734247498974Rat
1308201Frs2fibroblast growth factor receptor substrate 275271125552792738Rat
1308261LlphLLP homolog, long-term synaptic facilitation factor75573531755740341Rat
1309826Caps2calcyphosine 274758063647641598Rat
1306183Krr1KRR1, small subunit processome component homolog74747555747486996Rat
1310258E2f7E2F transcription factor 774615053346192739Rat
1308846Irak3interleukin-1 receptor-associated kinase 375565394955714371Rat
1310270Mettl25methyltransferase like 2574106227641143056Rat
1310532Cpmcarboxypeptidase M75322564753286220Rat
1307920Tbc1d15TBC1 domain family, member 1575080455350860272Rat
1564883Rpl12a-ps1ribosomal protein L12, pseudogene 175236672652367448Rat
1311912Ccdc59coiled-coil domain containing 5974114276041149143Rat
1561474Osbpl8oxysterol binding protein-like 874659694446749888Rat
1563000Glipr1l1GLIPR1 like 174755063747577611Rat
1560103HelbDNA helicase B75558851055615979Rat
1561871Rps10-ps22ribosomal protein S10, pseudogene 2275677264656773237Rat
1311672Cnot2CCR4-NOT transcription complex, subunit 275213044552222338Rat
1561092Mdm1Mdm1 nuclear protein75372960353766034Rat
1560748Bbs10Bardet-Biedl syndrome 1074675102846754132Rat
1562127Myrflmyelin regulatory factor-like75240332452519907Rat
1561292Il22interleukin 2275380120653805673Rat
1564876Slc35e3solute carrier family 35, member E375333709153350152Rat
1359143Cct2chaperonin containing TCP1 subunit 275269272552705478Rat
1562607Styx-ps1serine/threonine/tyrosine interacting protein, pseudogene 175636338956364593Rat
1582946H3f3a-ps5H3.3 histone A, pseudogene 575252344852526265Rat
1593643Thap2THAP domain containing 275099291251007582Rat
1588873Pes1-ps4pescadillo ribosomal biogenesis factor 1, pseudogene 474647604946477682Rat
1585306Arf1-ps4ADP-ribosylation factor 1, pseudogene 474972842149728965Rat
1589018Otoglotogelin-like74306580043211400Rat
1595789Btf3-ps10basic transcription factor 3, pseudogene 1075054446450546990Rat
1595790Zdhhc17zinc finger DHHC-type palmitoyltransferase 1774636996346433691Rat
1594497Rps12-ps4ribosomal protein S12, pseudogene75482751854827910Rat
1597418Mrpl47-ps1mitochondrial ribosomal protein L47, pseudogene 175284067952841539Rat
1594372Hdac1-ps6Histone deacetylase 1, pseudogene 674463472444645145Rat
1596822Lemd3LEM domain containing 375641505356499047Rat
1596851Msrb3methionine sulfoxide reductase B375626098556426004Rat
1593616Lyc2lysozyme C type 275288710452894447Rat
1596694Eif5-ps8eukaryotic translation initiation factor 5, pseudogene 874672305846724664Rat
1597472Rtcb-ps1RNA 2',3'-cyclic phosphate and 5'-OH ligase, pseudogene 175266985552671671Rat
1596425Taf7l-ps1TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 175176325951764401Rat
2301984Atxn7l3bataxin 7-like 3B74832245148325975Rat
2318888Rpl27a-ps2ribosomal protein L27a, pseudogene 274764285247675130Rat
2318367Pdia4-ps1protein disulfide isomerase family A, member 4, pseudogene 175224120052242264Rat
2319089Spdl1-ps1spindle apparatus coiled-coil protein 1, pseudogene 174658565446590216Rat
2324060Uqcr11l1ubiquinol-cytochrome c reductase, complex III subunit XI like 175487514454875314Rat
6493321Rpl31-ps2ribosomal protein L31, pseudogene 274430012344300616Rat
6486766Tuba1b-ps5tubulin, alpha 1B, pseudogene 574856449248565895Rat
7514887LOC102549403uncharacterized LOC10254940375040092250423295Rat
7542471LOC102547506uncharacterized LOC10254750675612579456140736Rat
7638646LOC102551482uncharacterized LOC10255148275150810351519060Rat
7658882LOC102547595uncharacterized LOC10254759574397609244001594Rat
7677619LOC102551386uncharacterized LOC10255138675149007851494499Rat
7677968LOC102549309uncharacterized LOC10254930975596419955977306Rat
7678454LOC102547249uncharacterized LOC10254724975599824456005560Rat
7725676LOC102550659uncharacterized LOC10255065975351829153525492Rat
7733495Ndufa13-ps3NADH:ubiquinone oxidoreductase subunit A13, pseudogene 375344091753441370Rat
7718419LOC102551023uncharacterized LOC10255102375371786953729789Rat
7721657LOC102548498uncharacterized LOC10254849874688330346907932Rat
7709076LOC102546573uncharacterized LOC10254657374841026548417520Rat
7710554LOC102550217uncharacterized LOC10255021775316179253172907Rat
7728983LOC102548561uncharacterized LOC10254856174720865647220235Rat
9117410LOC103692876small ubiquitin-related modifier 2 pseudogene75387473853875151Rat
9406127LOC103692856nuclear cap-binding protein subunit 2 pseudogene75073889650747463Rat
9447173Brcc3dcBRCA1/BRCA2-containing complex, subunit 3, domain containing74401488944016646Rat
9417884LOC103692846sulfotransferase 1C2 pseudogene74225480842256182Rat
11428166LOC108351461uncharacterized LOC10835146175333234453341706Rat
11429701LOC108351463uncharacterized LOC10835146375367989253695346Rat
11431842LOC108351450uncharacterized LOC10835145074744578247461331Rat
11414169LOC108351454uncharacterized LOC10835145474941918049434582Rat
11427685LOC108351449uncharacterized LOC10835144974732740847337493Rat
11410267Hnrnpa1-ps42heterogeneous nuclear ribonucleoprotein A1, pseudogene 4275104580151047650Rat
11389551LOC108351462uncharacterized LOC10835146275361951753629569Rat
11502995LOC108351467uncharacterized LOC10835146775608042056091186Rat
41354498LOC120093599uncharacterized LOC12009359975267695752685404Rat
41136792LOC120093582uncharacterized LOC12009358274374690243769702Rat
41235016LOC120093617uncharacterized LOC12009361775651237956527620Rat
41355956LOC120093594uncharacterized LOC12009359475186252251881220Rat
41089710LOC120093959small nucleolar RNA SNORA4475101910851019230Rat
41113964LOC120093938U7 small nuclear RNA75147428051474337Rat
41116110Sfr1-ps1SWI5-dependent homologous recombination repair protein 1, pseudogene 175345838153461341Rat
41207487LOC120093800uncharacterized LOC12009380074435876544363310Rat
41286435LOC120093600uncharacterized LOC12009360075279287152805208Rat
41208259LOC120093590uncharacterized LOC12009359075043309750440570Rat
41210402LOC120093928U6 spliceosomal RNA74633498146335086Rat
41211178LOC120093965small nucleolar RNA SNORA4874694066446940806Rat
41260607LOC120093614uncharacterized LOC12009361475597827655988331Rat
41120201LOC120093592uncharacterized LOC12009359275152912251541332Rat
41120395LOC120093598uncharacterized LOC12009359875263629252640179Rat
41120670Trnat-agu25transfer RNA threonine (anticodon AGU) 2575036331750363395Rat
41121043LOC120093583uncharacterized LOC12009358374642615046433558Rat
41150806LOC120093616uncharacterized LOC12009361675617856356194792Rat
41366535LOC120093586uncharacterized LOC12009358674667307546678086Rat
41098017LOC120093919U6 spliceosomal RNA74817766848177762Rat
41214652Trnap-agg57transfer RNA proline (anticodon AGG) 5775110298851103061Rat
41368650LOC120093977small nucleolar RNA SNORA4874371172743711871Rat
41394217LOC120093612uncharacterized LOC12009361275488826954901551Rat
41180745LOC120093589uncharacterized LOC12009358975035015950370342Rat
41181996LOC120093613uncharacterized LOC12009361375591315555941962Rat
41268730LOC120093851uncharacterized LOC12009385175420826754212875Rat
41346314LOC120093850MICOS complex subunit Mic10-like75107619551079347Rat
41397689LOC120093603uncharacterized LOC12009360375322943553235643Rat
41103456LOC120093607uncharacterized LOC12009360775349040553495755Rat
41127999LOC120093601uncharacterized LOC12009360175303123153044412Rat
41374847LOC120093989small nucleolar RNA SNORA1775611925456119374Rat
41163580LOC120093602uncharacterized LOC12009360275315392053159148Rat
41375281LOC120093587uncharacterized LOC12009358774734474247363207Rat
41084931LOC12009359139S ribosomal protein L50, mitochondrial-like75119307151213603Rat
41166350LOC120093606uncharacterized LOC12009360675346869753474503Rat
40972102LOC120093596uncharacterized LOC12009359675231948552323305Rat
40962771LOC120093799uncharacterized LOC12009379974380844543814458Rat
40969194LOC120094001small nucleolar RNA SNORA1774245986042459990Rat
41050361LOC120093580uncharacterized LOC12009358074281525443016555Rat
41052312LOC120093802uncharacterized LOC12009380275535615855359497Rat
41319368LOC120093615uncharacterized LOC12009361575617003956172387Rat
41135449LOC120093865basic proline-rich protein-like75354472253546293Rat
41054798LOC120093925U6 spliceosomal RNA74655878746558886Rat
41152665LOC120094046U5 spliceosomal RNA74265756642657674Rat
41061317LOC120093899U6 spliceosomal RNA75312126853121371Rat
41016237LOC120093975small nucleolar RNA SNORA4875293013352930274Rat
41236746LOC120093801uncharacterized LOC12009380174505690445073781Rat
41017733LOC120093585uncharacterized LOC12009358574655092746568690Rat
41067918LOC120093595uncharacterized LOC12009359575189986351919776Rat
41023123Rpl26-ps10ribosomal protein L26, pseudogene 1074370389943716963Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10880D7Mgh2212475288832652888450Ratregion
36099D7Rat2515775679321056793354Ratregion
37236D7Rat5112674725178347251899Ratregion
37256D7Rat10614974391053643910683Ratregion
37258D7Rat10721474442107944421311Ratregion
34789D7Rat4613174875897948759110Ratregion
39614D7Rat16723775310609653106333Ratregion
39884D7Rat16921174771946647719673Ratregion
40058D7Rat14615075361691753617069Ratregion
38794D7Rat7323375361271453612950Ratregion
39012D7Rat9824674975349649753746Ratregion
39016D7Rat10320074110969241109925Ratregion
42215D7Arb168774374701243747099Ratregion
42826D7Rat21014974643188446432023Ratregion
42830D7Rat20724175664188756642142Ratregion
41106D7Rat14714674659953146599681Ratregion
44249D7Got3416774133691041337077Ratregion
44251D7Got15725174410810444108355Ratregion
44252D7Got3321474530844145308655Ratregion
44253D7Got8328574796220047962485Ratregion
44255D7Got3912874913859049138718Ratregion
44256D7Got919974887586048875959Ratregion
44257D7Got8017175003291450033085Ratregion
44258D7Got14816675141562751415793Ratregion
44259D7Got4016775410309154103255Ratregion
44265D7Got4126475485817054858434Ratregion
44266D7Got4924775476962754769874Ratregion
60575D7Got4717275677175456771926Ratregion
60571D7Got3519274552504745525239Ratregion
60574D7Got4318475665361656653800Ratregion
67815D7Uwm1114074659587446596030Ratregion
629585D7Got4514875661217156612319Ratregion
62504D7Uia313074133367441333804Ratregion
1632072D7Wox3312674994751949947647Ratregion
1579067D10Chm25021875014650150146536Ratregion
1639140D7Wox3923675291295652913192Ratregion
1632848D7Got23715675168505351685209Ratregion
1632961D7Got23018374654194146542119Ratregion
1633564D7Got20723775518545355185690Ratregion
1635672D7Got23617574265634842656521Ratregion
1635752D7Got20617575539314155393316Ratregion
1636849D7Got22819474706939147069582Ratregion
1636907D7Got23122875479095254791180Ratregion
1638267D7Got24210974657039846570507Ratregion
2315416D16Nkg10415174454157144541728Ratregion
7205956Dyrk249775435474354355240Ratregion
7191287Myf591374280466842805581Ratregion
7193117Myf6074281358642814006Ratregion
7206422stm546acag-7A075586498355866413Ratregion
5035759WI-1975125475269275052693004Ratregion
7206518UniSTS:54684293475108878451089718Ratregion
5036223RH12564827475121044851210722Ratregion
5036470Ptprq63374284348242844115Ratregion
5037161RH7854916374381338243813545Ratregion
5031522AU04805112775240113752401264Ratregion
5034127RH14146418475565403655654220Ratregion
5026138RH13105822075036817250368392Ratregion
5026154RH13112218274348123443482285Ratregion
5026234RH13142921175253242052532631Ratregion
5026256RH13151318075192939551929575Ratregion
5029043RH14329921575100725751007472Ratregion
5026460RH13229815775068569550685852Ratregion
5034554BE11945316574994115849941323Ratregion
5034708BI28201220675328450353284709Ratregion
5034744BI27661817575642136956421544Ratregion
5029859AW53070017674408976744089943Ratregion
5032579WI-1678512674359283343592959Ratregion
5032919RH13696616075376580353765963Ratregion
5027621AI19500512375468135754681480Ratregion
5030269BF39633116075559469455594854Ratregion
5030413BE10623419575671509856715293Ratregion
5030513BE10693316075527404555274205Ratregion
5027987D3779216074381573143815891Ratregion
5033413RH13874412074695404646954639Ratregion
5025540RH12871919375342312353423316Ratregion
5031189AA99806021875090322550903443Ratregion
5052109RH9484519075390486853905058Ratregion
5054991RH14354211575297093352971048Ratregion
5055891RH14406210775035259250352699Ratregion
5056243RH14426611475211407352114195Ratregion
5056993Myf571674280401142804727Ratregion
5052107RH9484418275390485853905040Ratregion
5057410AA99651818975271130752711496Ratregion
5059446AW53085119675555148955551685Ratregion
5054781RH14342114875269856052699325Ratregion
5055835RH14403016475213826152138425Ratregion
5056085RH14417411375650236356502476Ratregion
5058790BE10243920674566598545666191Ratregion
5058080BF38658218775342577053425957Ratregion
5055385RH14377114375573988255740025Ratregion
5055753RH14398212175280520452805325Ratregion
5059872BI27905218175068668550686866Ratregion
5059148BF38756317374267295142673124Ratregion
5059168BE10294218774675389246754079Ratregion
5057666BI28341721174359231043592521Ratregion
5052703RH14221815874283725642837414Ratregion
5054221RH14310010875295203352952141Ratregion
5051765RH9464518274381327643813458Ratregion
5050918RH13433318075573228755733121Ratregion
5050940RH13434618075140085851401038Ratregion
5044766RH13079118075080470450804884Ratregion
5043986RH13034418074637021646370396Ratregion
5044122RH13042221474674937846749592Ratregion
5044164RH13044615875622924056229398Ratregion
5045724RH13134219174684075446840945Ratregion
5045900RH13144320175335384653354047Ratregion
5045530RH13123019575333711953337314Ratregion
5046494RH13178518975467347054673659Ratregion
5046006RH13150418174748831847488499Ratregion
5046050RH13152921575254529352545508Ratregion
5048846RH13314018175266268052662861Ratregion
5046944RH13204419175644819856448389Ratregion
5049704RH13363321875574006955740287Ratregion
5049788RH13368220675644927056449478Ratregion
5039348RH12765420275120987451210093Ratregion
5039668RH12783821975289405052894271Ratregion
5039668RH12783821975289405052894271Ratregion
5039668RH12783821975290698552907204Ratregion
5048560RH13297420475558866255588865Ratregion
5049514RH13352518075565787655658056Ratregion
5040152RH12811915374695763946957792Ratregion
5040160RH12812420775108721851087425Ratregion
5042622RH12954518375267155552671876Ratregion
5039328RH12764318775289402552894214Ratregion
5039328RH12764318775289402552894214Ratregion
5039328RH12764318775290704252907229Ratregion
5041954RH12915418674372479043724976Ratregion
5043320RH12995821975329078553291004Ratregion
5042818RH12966319074636751746367707Ratregion
5043848RH13026219375203438552034578Ratregion
5041512RH12889918075193951151939691Ratregion
5075822RH13881714074635801446358154Ratregion
5074258RH13791312174348790443488025Ratregion
5074354RH13796820274420675444206956Ratregion
5076528RH13922822475573228755733165Ratregion
5072610RH13694920875258029052581024Ratregion
5076882RH13943312575468093154681056Ratregion
5080634RH14169321175677981656780029Ratregion
5080670RH14171418374359359343593776Ratregion
5080704RH14173321974636789746368115Ratregion
5077426RH13974919075090280450902994Ratregion
5076092RH13897415575147558051475735Ratregion
5075638RH13871015874214314942143307Ratregion
5079524RH14104719575145776151457956Ratregion
5077916RH14003418774381587143816058Ratregion
5078028RH14010021575435081354351028Ratregion
5077634RH13986921974113614841136367Ratregion
5078430RH14033815175214961152149762Ratregion
5079862RH14124616075222239552222555Ratregion
5078904RH14061918075328599353286173Ratregion
5080062RH14136121974832122548321444Ratregion
5080170RH14142518074994607849946258Ratregion
5070612RH13460221775268791852688135Ratregion
5070808RH13471720075285845152858651Ratregion
5073320RH13736821975391665453916873Ratregion
5073320RH13736821975391665453916873Ratregion
5078744RH1405279075295996752960057Ratregion
5071390RH13505419775295930052959497Ratregion
5070674RH13463920775467764454677851Ratregion
5070802RH13471418575271199452712179Ratregion
5072946RH13714520875121057051210778Ratregion
5073944RH13772914875512186555122013Ratregion
5072070RH13544722374648224646482469Ratregion
5074400RH13799522175206384052064061Ratregion
5074824RH13823917174432377944323950Ratregion
5074826RH13824113675471933654719472Ratregion
5071630RH13519319674634975046349946Ratregion
5066628AU04824517475178135751781526Ratregion
5066708AU04819815175207689252077044Ratregion
5067362AU04780023174364657143646802Ratregion
5067404AU04776925574364654843646803Ratregion
5067548AU04767819175107534451075530Ratregion
5067946AU04744121174349852743498738Ratregion
5068374AU04718517775393671153936881Ratregion
5070241RH9455316375288746852887631Ratregion
5070241RH9455316375288746852887631Ratregion
5070241RH9455316375291157852911741Ratregion
5070241RH9455316375291157852911741Ratregion
5070251RH9455916674281318742813353Ratregion
5070352AI8431919775391690553917002Ratregion
5070352AI8431919775391690553917002Ratregion
5069350AU04655514974772116747721291Ratregion
5069350AU04655514974772116747721315Ratregion
5063716BF40463610774788122347881330Ratregion
5062262BE10641916074222438842224548Ratregion
5063992BE12038821774194309741943314Ratregion
5063996BE12039519475222578452225978Ratregion
5063700BE10799915074394762443947774Ratregion
5065416BE11541518975295857552958764Ratregion
5062312BI28868918675337195953372145Ratregion
5060874BF39588918674831834248318528Ratregion
5062806AW53456918475649777356497957Ratregion
5064388BF39919119474692624546926439Ratregion
5061054BF4018929175345689253456983Ratregion
5064514BI30221320975006860450068813Ratregion
5061204BE09927115175253151452531665Ratregion
5063208BI30141920575232182852322033Ratregion
5084074AA94417119475331196053312154Ratregion
5084310AI17650519475106414251064336Ratregion
5086183BM38473817975236933052369509Ratregion
5086220AI10328018475253084952531033Ratregion
5087026BQ20825218775434776654347953Ratregion
5087044BM38911821975333695053337169Ratregion
5087118AA80079918974832260048322789Ratregion
5089043AU04892114674504495645045097Ratregion
5089211AU04902116775541462955414796Ratregion
5089929AU04944820575464231754642522Ratregion
5083251BF41703121475147700051477214Ratregion
5089557AU04922617274190853341908705Ratregion
5088583AU04865627174760635047606621Ratregion
5088885AU04882726474642916046429424Ratregion
5089653AU04928315875293056352930721Ratregion
5082265BE11908216275561308455613246Ratregion
5088359AU04852220974909550049095709Ratregion
5085367BQ21008916575650133556501500Ratregion
5090385AU04971927175462774454629303Ratregion
5088675AU04871021174186102741861238Ratregion
5081368AI02972821275284076952840981Ratregion
5090155AU04958329474729238447292678Ratregion
5089125AU04896817475504268155042855Ratregion
5080940RH14187120075290621752906417Ratregion
5081086RH14195718274574439145744573Ratregion
5083241BI27573117975468136954681548Ratregion
5085246AI59847022075108784051088060Ratregion
5085892BE09964618075090130950901489Ratregion
5084036AI01167717775340686353407040Ratregion
5134356D7Uwm2425675168502951685285Ratregion
5503788UniSTS:471082136475268698852688352Ratregion
5504272D19S653E8374505228745052370Ratregion
5504318D14S655E074695508146956484Ratregion
5505294Lgr5131375108968251090995Ratregion
5507027fk81g07.x197474973636649736538Ratregion
5500055UniSTS:23647313475571921355719347Ratregion
5500270D12S1376E9174513945545139546Ratregion
5500575RH13603120775267111652671323Ratregion
5500837D3S416114174636606946366850Ratregion
5503700MARC_36444-36445:1067884409:185875269638652697244Ratregion
5501400Myf6074281358342814392Ratregion
5501472D7S22468475331391853314002Ratregion
5501962MARC_21230-21231:1032890530:1074281355142813957Ratregion
Position Markers

Flank 1: (D7Rat103)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2741,109,692 - 41,109,925 (+)MAPPER
Rnor_6.0747,895,099 - 47,895,329NCBI
Rnor_5.0747,909,781 - 47,910,011UniSTS
RGSC_v3.4744,462,830 - 44,463,060UniSTS
RGSC_v3.4744,462,790 - 44,463,229RGD
RGSC_v3.1744,483,101 - 44,483,331RGD
Celera737,985,977 - 37,986,207UniSTS
RH 3.4 Map7361.0UniSTS
RH 3.4 Map7361.0RGD
RH 2.0 Map7310.9RGD
SHRSP x BN Map725.4RGD
FHH x ACI Map724.58RGD
Cytogenetic Map7q21UniSTS
Peak: (D7Rat147)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2746,599,531 - 46,599,681 (+)MAPPER
Rnor_6.0753,881,455 - 53,881,604NCBI
Rnor_5.0753,890,984 - 53,891,133UniSTS
RGSC_v3.4750,164,660 - 50,164,809UniSTS
RGSC_v3.4750,163,959 - 50,164,849RGD
RGSC_v3.4750,164,126 - 50,164,809UniSTS
RGSC_v3.1750,185,102 - 50,185,251RGD
RH 3.4 Map7394.4UniSTS
RH 3.4 Map7394.4RGD
RH 2.0 Map7361.8RGD
SHRSP x BN Map729.74RGD
Cytogenetic Map7q21UniSTS
Flank 2: (D7Rat25)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2756,793,210 - 56,793,354 (+)MAPPER
Rnor_6.0763,372,611 - 63,372,754NCBI
Rnor_5.0763,596,501 - 63,596,644UniSTS
RGSC_v3.4760,576,516 - 60,576,660RGD
RGSC_v3.4760,576,517 - 60,576,660UniSTS
RGSC_v3.1760,597,247 - 60,597,390RGD
Celera753,538,981 - 53,539,124UniSTS
RH 3.4 Map7494.5RGD
RH 3.4 Map7494.5UniSTS
RH 2.0 Map7423.6RGD
SHRSP x BN Map736.71RGD
FHH x ACI Map733.46RGD
Cytogenetic Map7q22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)72940968353612950Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
2303629Vencon3Ventilatory control QTL 37.25respiration trait (VT:0001943)respiration rate (CMO:0000289)74110969256793354Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross