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Gene: Acss3 (acyl-CoA synthetase short-chain family member 3) Rattus norvegicus

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Symbol:

Acss3

Name:

acyl-CoA synthetase short-chain family member 3

RGD ID:

1307051

Description:

Enables acetate-CoA ligase activity; medium-chain fatty acid-CoA ligase activity; and propionate-CoA ligase activity. Predicted to be involved in lipid metabolic process. Located in mitochondrial matrix. Orthologous to human ACSS3 (acyl-CoA synthetase short chain family member 3); PARTICIPATES IN 3-hydroxyacyl-CoA dehydrogenase deficiency pathway; fatty acid beta degradation pathway; malonic aciduria pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

acetate--CoA ligase 3; acyl-CoA synthetase short-chain family member 3, mitochondrial; hypothetical protein LOC314800; LOC314800; propionate--CoA ligase; RGD1307051; similar to hypothetical protein FLJ21963

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	44,127,725 - 44,336,707 (-)	NCBI		GRCr8
mRatBN7.2	7	42,241,261 - 42,450,209 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	42,242,652 - 42,450,230 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	44,173,696 - 44,355,183 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	46,376,772 - 46,558,269 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	46,154,652 - 46,336,112 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	49,047,022 - 49,250,953 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	49,047,013 - 49,250,957 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	49,059,778 - 49,265,391 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	45,646,821 - 45,833,803 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	45,642,178 - 45,853,987 (-)	NCBI
Celera	7	39,145,557 - 39,324,519 (-)	NCBI		Celera
Cytogenetic Map	7	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

calcitriol (ISO)

cantharidin (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

DDT (EXP)

dichloroacetic acid (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

endosulfan (EXP)

flutamide (EXP)

indometacin (EXP)

lead(0) (ISO)

mercury dichloride (ISO)

Mesaconitine (EXP)

methylmercury chloride (ISO)

nickel atom (ISO)

okadaic acid (ISO)

paracetamol (ISO)

PCB138 (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phytoestrogen (ISO)

potassium chromate (ISO)

quercetin (ISO)

senecionine (ISO)

silicon dioxide (ISO)

sodium arsenite (EXP,ISO)

testosterone (ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

tremolite asbestos (ISO)

trichloroethene (EXP,ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lipid metabolic process (IEA)

Cellular Component

mitochondrial matrix (IBA,IDA,IEA,ISO)

mitochondrion (IEA,ISO)

Molecular Function

acetate-CoA ligase activity (IDA,IEA)

ATP binding (IEA)

ligase activity (IEA)

medium-chain fatty acid-CoA ligase activity (IDA)

nucleotide binding (IEA)

propionate-CoA ligase activity (IBA,IDA,IEA,ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

3-hydroxyacyl-CoA dehydrogenase deficiency pathway (ISO)

fatty acid beta degradation pathway (ISO)

malonic aciduria pathway (ISO)

methylmalonic aciduria, cobalamin-related pathway (ISO)

propanoate metabolic pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Molecular cloning of rat acss3 and characterization of mammalian propionyl-CoA synthetase in the liver mitochondrial matrix.	Yoshimura Y, etal., J Biochem. 2017 Mar 1;161(3):279-289. doi: 10.1093/jb/mvw067.

Additional References at PubMed

PMID:18614015

Genomics

Comparative Map Data

Acss3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	44,127,725 - 44,336,707 (-)	NCBI		GRCr8
mRatBN7.2	7	42,241,261 - 42,450,209 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	42,242,652 - 42,450,230 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	44,173,696 - 44,355,183 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	46,376,772 - 46,558,269 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	46,154,652 - 46,336,112 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	49,047,022 - 49,250,953 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	49,047,013 - 49,250,957 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	49,059,778 - 49,265,391 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	45,646,821 - 45,833,803 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	45,642,178 - 45,853,987 (-)	NCBI
Celera	7	39,145,557 - 39,324,519 (-)	NCBI		Celera
Cytogenetic Map	7	q21	NCBI

ACSS3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	81,077,871 - 81,261,210 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	80,936,414 - 81,261,210 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	81,471,858 - 81,654,989 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	79,995,940 - 80,173,713 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	81,138,032 - 81,316,367 (+)	NCBI		Celera
Cytogenetic Map	12	q21.31	NCBI
HuRef	12	78,528,812 - 78,706,348 (+)	NCBI		HuRef
CHM1_1	12	81,438,372 - 81,616,058 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	81,056,837 - 81,240,187 (+)	NCBI		T2T-CHM13v2.0

Acss3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	106,769,375 - 106,959,622 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	106,769,378 - 106,959,529 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	106,933,514 - 107,123,761 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	106,933,517 - 107,123,668 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	106,373,220 - 106,560,720 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	106,369,192 - 106,527,778 (-)	NCBI		MGSCv36	mm8
Celera	10	108,877,696 - 109,072,448 (-)	NCBI		Celera
Cytogenetic Map	10	D1	NCBI
cM Map	10	55.66	NCBI

Acss3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	19,677,537 - 19,836,086 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	19,677,191 - 19,836,086 (+)	NCBI	ChiLan1.0	ChiLan1.0

ACSS3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	89,115,744 - 89,300,534 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	89,110,389 - 89,291,091 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	78,586,987 - 78,771,478 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	81,698,782 - 81,878,325 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	81,698,875 - 81,878,325 (+)	Ensembl	panpan1.1		panPan2

ACSS3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	23,337,386 - 23,480,766 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	23,338,432 - 23,478,593 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	23,761,776 - 23,904,041 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	23,699,143 - 23,842,034 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	23,699,019 - 23,841,651 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	23,276,355 - 23,427,464 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	23,336,248 - 23,478,319 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	23,576,616 - 23,719,097 (+)	NCBI		UU_Cfam_GSD_1.0

Acss3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	36,823,381 - 36,982,797 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936698	1,929,683 - 2,089,228 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936698	1,929,683 - 2,089,703 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ACSS3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	100,279,698 - 100,429,165 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	100,272,255 - 100,429,229 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	105,195,329 - 105,368,501 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ACSS3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	76,563,595 - 76,737,014 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	76,563,668 - 76,736,852 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	168,686,420 - 168,867,257 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Acss3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624837	416,028 - 625,885 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624837	416,779 - 626,097 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Acss3
1250 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	87
Count of miRNA genes:	72
Interacting mature miRNAs:	80
Transcripts:	ENSRNOT00000066975
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354644	Spl4	Serum phospholipid level QTL 4	4.9		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	7	19654317	49753746	Rat
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	21921195	66921195	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	5329019	50329019	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	9866467	60460686	Rat
1641885	Alcrsp9	Alcohol response QTL 9			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	7	24099606	69099606	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1	44822433	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	24751841	69751841	Rat
10755438	Coatc9	Coat color QTL 9		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	3529280	48529280	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	29409683	84928080	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	9462246	58265113	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	37960569	82960569	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	7573985	52573985	Rat
10755440	Coatc10	Coat color QTL 10		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	7496499	52496499	Rat
1354637	Scl30	Serum cholesterol level QTL 30	3.7		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	7	19654317	49753746	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	31112832	76112832	Rat
1354639	Spl5	Serum phospholipid level QTL 5	3.9		blood LDL phospholipid amount (VT:0010505)	blood low density lipoprotein phospholipid level (CMO:0001568)	7	19654317	52888450	Rat
10755451	Coatc11	Coat color QTL 11		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	17944357	62944357	Rat
2317059	Aia15	Adjuvant induced arthritis QTL 15	2.46		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	17004598	62004598	Rat
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	44782185	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	34293282	79293282	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	9462246	98011544	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	34293282	79293282	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	41333674	119109060	Rat
2303629	Vencon3	Ventilatory control QTL 3	7.25		respiration trait (VT:0001943)	respiration rate (CMO:0000289)	7	41109692	56793354	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	26737401	63902784	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	19654317	84928080	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	29409683	53612950	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	29409683	74409683	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	15573889	60573889	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001414941	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000066975 ⟹ ENSRNOP00000062459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	42,268,832 - 42,450,230 (-)	Ensembl
Rnor_6.0 Ensembl	7	49,074,595 - 49,250,953 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082141 ⟹ ENSRNOP00000071300

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	42,242,652 - 42,450,230 (-)	Ensembl
Rnor_6.0 Ensembl	7	49,047,013 - 49,250,957 (-)	Ensembl

RefSeq Acc Id:

NM_001108091 ⟹ NP_001101561

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	44,155,294 - 44,336,684 (-)	NCBI
mRatBN7.2	7	42,268,832 - 42,450,209 (-)	NCBI
Rnor_6.0	7	49,074,595 - 49,250,953 (-)	NCBI
Rnor_5.0	7	49,059,778 - 49,265,391 (-)	NCBI
RGSC_v3.4	7	45,646,821 - 45,833,803 (-)	RGD
Celera	7	39,145,557 - 39,324,519 (-)	RGD

Sequence:

show sequence

GCCTCCTGCAGGCTCCCCCTCAGGGGCAGTGCCACCGCTGTTGGGATAGCAAGCTGCTCCGCCT
GCAGCTAGGGACAGAAAGAAAGTATGAAGCCCTCCTGGTTGCAATGTCGCAAAGTAACAGGCGC
CGGGACGCTTGGGGCACCTCTGCCAGGATCCCCTTCAGTAAGAGGAGCTGGTGTGGCCCGAAGG
GCTTTGGTGGCCGGGTTCGGGGGCAGGGGCTGCAGGGCTCTGACCACAAGCAGCGGTGGTGGCG
AGTACAAGACCCACTTTGCAGCCTCTGTGGCTGACCCGGAGAGATTCTGGGGTAAAGCTGCTGA
GCAGATCAGTTGGTACAAGCCCTGGACCAAAACACTAGAGAACAGATACCCGCCTTCCACTAGT
TGGTTTGTGGAAGGGATGCTCAACATTTGTTACAATGCTATTGATCGGCACATCGAAAATGGCC
AAGGGGATAAGATCGCTATCATCTATGACAGTCCCGTTACAGACACCAAAGCAACTATCTCCTA
TAAGGAAGTCTTGGAGCAGGTCTCTAAGCTGGCTGGTGTCTTGGTCAAGCAAGGTGTCAAGAAA
GGTGATACTGTGGTCATCTACATGCCCATGATCCCACAAGCAATATACGCCATGTTGGCATGTG
CGAGGATAGGCGCAATTCACAGTCTCATATTCGGCGGGTTTGCATCCAAGGAATTAAGTACACG
CATTGATCATGTGAAGCCTAAGGTGGTTGTTACAGCATCATTCGGCATTGAGCCTGGGAGGAAG
GTAGAGTACATGCCCCTTCTAGAAGAAGCTCTCAGAATAGGACAACACAAACCAGACAGACTCC
TCATTTACAACCGTCCAAATATGGAGAAAGTTCCTTTGATGTCAGGTCGTGATCTTGATTGGGA
AGAAGAAATGGCAAAAGCCCAGTCACATGACTGCGTGCCTGTTCTCTCAGAGCATCCCTTGTAC
ATTCTCTACACATCTGGAACAACTGGCCTGCCTAAGGGTGTAGTTAGACCCACTGGGGGATATG
CTGTAATGTTGAACTGGACAATGTCTTCCATATATGGACTTAAACCTGGAGAGGTATGGTGGGC
AGCTTCTGACTTAGGCTGGGTTGTCGGACATTCCTATATTTGCTATGGTCCTCTTCTACATGGA
AACACAACAGTTTTATATGAGGGGAAACCTGTGGGAACACCGGATGCTGGCGCTTATTTCCGTG
TGCTCGCAGAGCATGGAGTGGCTGCCTTGTTTACAGCACCAACCGCAATTAGAGCCATCCGTCA
ACAGGACCCTGGGGCAGCCTTGGGGAAGCAGTACTCTCTGACAAGGTTCAAGACACTGTTTGTG
GCTGGGGAAAGATGTGATGTGGAGACCCTAGAGTGGTCCAAAAAAGTCTTCCGCGTTCCTGTCC
TAGACCACTGGTGGCAAACAGAGACTGGATCCCCCATCACAGCATCATGTATCGGACTAGGCAA
CTCCAAAACACCCCCACCAGGACAAGCAGGAAAATGTGTTCCAGGATACAATGGAAGCTACCTG
TCTTATAATTCTGTGATGTCTCTGACTTCTCCTGCTATGAAAAAATGAGCCCAGATCCAATGAA
CCCCCCAAATGAACAGTTGCTGCCCTCACTCTTTGATTAGAAAACCTCTCTGTGTTGAGATACT
TTTAGGGGCTGCCAACGTGGGAGATGTTAAACATATTTTCCCTTAGTATCTGTTCCGTTTTTAT
ACCCAGTTATATGAAAAAGTTAAGCTTTGACATCTTCTGGAGCTTTAATACAGAAAACTCTCAT
TGTTCAAAAACCACTGGCTTCCAGAGGACACATTAAACTACTGTAGTTGAGGCATCAGGGACTT
TGTGACTGATACATTTTTGATTTGTTCAATGATTATACAAAACTGTGAAAGCATAATATAAGAC
ACATCATTATAGTAAAGGAAAGCTACTTTGAAGAAGTAAAGGAAACTTTTCTTTGTGAAAGAAT
CCATGTGTTATGGTATTTAATTTCATACCCATTCTCTATAGACTGCTACAATTAGAAGGCATTG
CTCCTATTTTATAAACAGGAAACCAGAAGCAGATAAAATAACATGGCCCGGGGCATGTAGTTAT
TAGAAGGTTGTCTTGTGATTTGATGAAATAAAAATGAACAAGGACTGGTTTTCACTTATGATGG
ACTCATAATCAGCAGAATACAGATATTTATAATTTTAATTACTGTCATTATAATGTTTTCCAAC
AGTGCCCTCCATAAATACAAACTTGGCTCAGTGCCTTCCCACAGTTGTTTGGGAATAACCTAAG
TGAATAGAACAACATAAATGACTTCAGAATCTAGACAATTGCGATTCATTCTTAAGGCTGACAT
GGTGTTATCTGGACACAGGATACTGAACATTTTCCATATTCAATCAACACATCATGGAGTGATA
TATTTGGAAA

hide sequence

RefSeq Acc Id:

NM_001414941 ⟹ NP_001401870

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	44,127,725 - 44,336,684 (-)	NCBI
mRatBN7.2	7	42,241,261 - 42,450,209 (-)	NCBI

RefSeq Acc Id:

XM_006241303 ⟹ XP_006241365

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	44,127,725 - 44,335,568 (-)	NCBI
mRatBN7.2	7	42,241,261 - 42,443,971 (-)	NCBI
Rnor_6.0	7	49,047,022 - 49,244,691 (-)	NCBI
Rnor_5.0	7	49,059,778 - 49,265,391 (-)	NCBI

Sequence:

show sequence

TGGATGAAACTTGTTCCAGAAAGTGTTAGGAAAGAGACAAGTGTCCTTTAATTTTGTGATGAAT
AAAGAAGGGATACATATTGTTTTTAATGGGAAAGTCTATAGTGGTCAAGAGCTCTAGGCCTGTT
TTAAGAATATCGGATTGGAAGATATTTAATCTTACCCAGAAACACTTGGTGATGTTCAGTCAGG
CAATGCCCACTGAGAGGACGGTGCTAAGGACGGAACAGTTTGTTGCAGAGTGTCCTGCTGGCAG
GCAGAAATTTCTGTGGACTTCTTTGACAGTGACAAACCCGAGAGACAGAAAAACAGCTCACTGA
GGTTCCTGTGTCAACAGAAAGTTGCTTTCTTCCTTAGCTATCTTTTCCTTTCTTCTCTCCAGCC
CGCTTTTGGAGGAATGTGTGTTTCAAGGTTGAAGTGAAGAAACCAAGAAGGAGAGGAATTTTAT
TTTGAAACCCATTGCTTCAGAACTCACTGGTTTTGCAAGCTGGACATTTTGTGCTTTGTTTTGT
TCTTTTTGGTGCTGGAAGTTCCTGGAAGAAACAGGATAGCAAAATCTAGAAGATGCGATTCACA
GCTACTTGGCCAATCTTTACTTTTTTTTGTTTTCGGTTTTTATTATACCCTGCAATGATTCTAA
TGAGCTAGATAGCTAAACATTCCATTATGATCCTGGCAGAGAAGATAAGGAAATACTTTTTGTT
GTTTTATTTTTTTAAGGAAATTGTTTTTTTCATGTACTCTCTAAGCCATGCCCTACACAAGATG
AGTTTGCATGTCTTTCGGTTAATGCTTTACTGAGTGCTACAGGGTTAGGAACGCTCATGTGCTT
TGCACACAGGAGGTAGAAGCCAATCTCCCCAAGAGGCCATACAGCCAGTTAGTGGAGGGCAGAG
ATGGTTAGTAGTAATAACTGCAGTGGTCCTGGATCAGAGCCCAGAATCTTCATCTACAAATACC
TAGGCAACTGTTTCAGAAGCCGGGTGCCAAATCTTGAATCATTTAAAGGAGGATTTGGACAGAG
AAATTGTTCTAAATTGAAGGAGAATAAAGAAACCTGAACTCCTTGCAATAGGTTTGTGGAAGGG
ATGCTCAACATTTGTTACAATGCTATTGATCGGCACATCGAAAATGGCCAAGGGGATAAGATCG
CTATCATCTATGACAGTCCCGTTACAGACACCAAAGCAACTATCTCCTATAAGGAAGTCTTGGA
GCAGGTCTCTAAGCTGGCTGGTGTCTTGGTCAAGCAAGGTGTCAAGAAAGGTGATACTGTGGTC
ATCTACATGCCCATGATCCCACAAGCAATATACGCCATGTTGGCATGTGCGAGGATAGGCGCAA
TTCACAGTCTCATATTCGGCGGGTTTGCATCCAAGGAATTAAGTACACGCATTGATCATGTGAA
GCCTAAGGTGGTTGTTACAGCATCATTCGGCATTGAGCCTGGGAGGAAGGTAGAGTACATGCCC
CTTCTAGAAGAAGCTCTCAGAATAGGACAACACAAACCAGACAGACTCCTCATTTACAACCGTC
CAAATATGGAGAAAGTTCCTTTGATGTCAGGTCGTGATCTTGATTGGGAAGAAGAAATGGCAAA
AGCCCAGTCACATGACTGCGTGCCTGTTCTCTCAGAGCATCCCTTGTACATTCTCTACACATCT
GGAACAACTGGCCTGCCTAAGGGTGTAGTTAGACCCACTGGGGGATATGCTGTAATGTTGAACT
GGACAATGTCTTCCATATATGGACTTAAACCTGGAGAGGTATGGTGGGCAGCTTCTGACTTAGG
CTGGGTTGTCGGACATTCCTATATTTGCTATGGTCCTCTTCTACATGGAAACACAACAGTTTTA
TATGAGGGGAAACCTGTGGGAACACCGGATGCTGGCGCTTATTTCCGTGTGCTCGCAGAGCATG
GAGTGGCTGCCTTGTTTACAGCACCAACCGCAATTAGAGCCATCCGTCAACAGGACCCTGGGGC
AGCCTTGGGGAAGCAGTACTCTCTGACAAGGTTCAAGACACTGTTTGTGGCTGGGGAAAGATGT
GATGTGGAGACCCTAGAGTGGTCCAAAAAAGTCTTCCGCGTTCCTGTCCTAGACCACTGGTGGC
AAACAGAGACTGGATCCCCCATCACAGCATCATGTATCGGACTAGGCAACTCCAAAACACCCCC
ACCAGGACAAGCAGGAAAATGTGTTCCAGGATACAATGTTATGATTTTGGATGACAACATGCAA
AAACTGAAGGCTAGAAGCTTAGGAAATATCGTGGTAAAGTTGCCTTTACCACCTGGGGCTTTCT
CAGGACTCTGGAAGAATCAGGAAGCGTTCAAGCATTTATACTTTGAGAAATTTCCTGGATACTA
TGACACTATGGATGCTGGCTACATGGATGAGGAAGGCTATCTCTATGTTATGTCCCGAGTGGAT
GATGTAATAAACGTTGCAGGCCACAGGATTTCTGCAGGGGCTATTGAGGAGTCAGTCCTTTCAC
ACGGCACTGTGACTGACTGCGCTGTGGTTGGCAAGGAAGACCCCTTGAAAGGTCATGTCCCATT
AGCACTCTGCGTGTTGAAGAAAGACGTAAATGCAACAGAAGAACAAGTTTTGGAAGAGATTGTG
AAACATGTTAGGCAGAGCATTGGCCCGGTGGCTGCTTTTCGAAATGCAGTTTTCGTCAAACAGT
TACCCAAAACCAGGTCTGGCAAAATTCCACGGTCTACCCTGTCTGCCCTGGTCAATGGCAAGCC
TTATAAGGTAACCCCTACAATTGAGGACCCCAGCATTTTTGGTCACATCGAAGAAGTACTGAAG
CAGGCTTTGTGATGTTTACTCTTTTGAATCCCTTCGTCTTAACTTTCTAGCTGGATCTAGGTCT
TCTATTTTCTACAAGTAAATACTTGAAGAAAACATTTCTCATCAACTGAGCTATGAGCTGTAGT
GTGTAGTTAGTCTGGTGGCCCCTGAAAGGCTGTACATTGTGTTTCGCGGAAACCTGTTTGCCCC
CTTACCTCTTTTCTGTAACATGGATCATTCTACACTATCGCGTGTGTTAAGGAGCATGTTAAGG
AGTATGGCTTTGCTAACTCGTGTGCTTCCCAAACACATTTTAGTGGAGAATATCTGTACTACAA
ATGCACTTTCTGGAGATAAAAATCAGCCACACGTTGATCAAAATCTAAACTGAAATCTAAGTCA
GAATATAATTTACAATGCTATCGTAGAGACTCCAATGTTGTTTACTGTTCTAAAGATGACTGCC
ATGCTTCCAGGTAATTAGCAAGACAGGATAGGCTGCCTAGCAACACAGGACCCAGGGTCAAGCA
CCACTGCCTGGTTGCTTGTTACGGGGTAAGGGGAGGCATATATCTGGCAGAGAACCTAGCTATC
CTTCCACCAAATATTTTGAGGAGATAAAGACTTCTGCAATCCCCTGTCATGGTTCACTCTGTGT
ATCTGGATGCTTTCATCTTTCTATGGAATCGAGGGATGCCCTTCACCTAGAAAGGAGTAACAAG
AAAGATCTTATAAGAAATTGAAATTTTTTCATCCTCTGCTAGATCTCAATACATTTTCAGAACT
TTGCCAATATCAATGAGCCTTCTCTCTTCTCTGTGTCTGTCTCTGTCTCTCTCTGTCTCTCTGT
CTCTCTCTCTGTCTTCCCTCACCTCTGACAAGGATGTGTTTCCTAGGTTGTCCTCACAAATCCT
TGTCCCCCTGCCTCTTATTCATAGTTGCTGGGGTTAGTTCCAAAGTAGTACTTTTTCCTCCTAT
AAGGGTTGAACCCAGAGCCTTGTGCGTGATAGGAAAGCATCTTCCACTGAGCTGGATCACTGGT
GCTCAATGAATTCATGTTGGTTCTTGAGGTGCATATCCCAACAAGTGATTTTTAAGAACAATGC
ACAGCCTTAAATACTAGAAAACCATGCACTCCATCAAGAGTGCAGTTCTATCAGATCCCAGAGA
AATGGCTCAGGAGAGAGGCTGTACCAATACTGCAAGAGCCTCTGGTTTTCAAGAGAACCCCAAA
CATTTACTCTTAGTGCAAATTTTAATTTGAATTTGAATAAATTTCAAATCATCTAAAATCATGG
TCTAACATACATTTCTTCTATAAAACGATGGAGCCTTTTAAAAACTGGAATTAAGCCTTTAATA
AATTTATAGAAATTCACCCATTTAATAGAGCAGAAAGAAATTGTTGATTAACCAGCTTAGAGCT
CTACACTTGTTATTATTGTTAGAATGTATATTTAAATTACAAAAAGTTTACTGTGTTCATTGAA
TCTCTGAGAGGACTTGGAATAATTTCTCAATTCTTCGGATTCTTTTGGAAACATGATGAAGAGC
ACAATGTCCTCACAGAATAGCCCAAAAATGAAATATAAATAAGCAACAACAGATAGGCATTTAC
TGGCCATAAAAGCTATGCGTATCTTATATAGAGCTCTTGTTTTAGGCCTCTTTGGTCTGTGTTC
TAACTGATAAGTCCAAATACAAGAAATATAGGTGAGAATTAACAGATTGCAATTTATTTGTTAA
AAGTTATATATGTATAAAGGCCCCTTTATATTTAAAGGCTCTTAGATAAAGGCTCCATTTTAGG
CAACTTTGGGGGCAAAAATGGATAATAAATGGCTTCTCAAAAGGAAGTCTTATTCATTAAACTA
CCTTCTTTATTGGTAACATTGAAAACAATATCTTATCATCTTTAATTATTTTGGTATTCTGAGT
TAAACTAACATTTTGTAACTTGTAGCTGTTGAGTTTCTTGAATTATTCATTGTACATGTACATT
TTACCCATTATCACAACTGTTGGGATTACAAATCAATGATTTTTAATATGTTAGCATCAAAATA
CAGTTCATTACTTTCTCCACATGAATCAGGTGCTTTAACTAAATTTTTCATTTTGATATTTGCA
AGTTAGAAGAAACTCAAGCAGATCTAAGACTTGAGTAAAGTTTTCATCTTTGGACCATTTGTAG
ATTTTCTTCTTTCTCAGACCTGAACGGACACATCAGCAAGTAAGCATAGTTATTTTCCAGTAGA
AAGAATCTTAAAAAGTAAGTAAACAAAATGGACAAAACAAACAAACAGAAAACAGTTTTTCACA
CATGGAAAGGAGCTGTTTTTCTTGTTTCAATGAGGAAATCCATCTCCCCTGCAGACTAGAGGCA
GTGATCACGTTGTGGTCCTAAAATGAAGTCATCAGACTGCTTAGTAACTTGGGAGGAAATTAAA
GAATGTTCTGTTTTAAAATCTCACCATAAGGTTTTTGGCATTGCTTGTTTTGTTTGTCAAATTG
CATCTAAAATATTTTGAATTCAATGTGTCTCTGATAGCAATGACATAATCCAAGAAATGTGACC
ATACTTAAATTGACCTTGATGACTTCTCTGTGATCTTTCATTTTATGAAATTTTTAAATTTGTA
AGACACATGCGGAATGAAAATAAAAAGTACCTTTAACGTTTAAA

hide sequence

RefSeq Acc Id:

XM_039079107 ⟹ XP_038935035

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	44,127,725 - 44,336,238 (-)	NCBI
mRatBN7.2	7	42,241,261 - 42,449,761 (-)	NCBI

RefSeq Acc Id:

XM_039079108 ⟹ XP_038935036

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	44,180,740 - 44,336,707 (-)	NCBI
mRatBN7.2	7	42,294,264 - 42,450,209 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101561	(Get FASTA)	NCBI Sequence Viewer
	NP_001401870	(Get FASTA)	NCBI Sequence Viewer
	XP_006241365	(Get FASTA)	NCBI Sequence Viewer
	XP_038935035	(Get FASTA)	NCBI Sequence Viewer
	XP_038935036	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	A0A0G2K047	(Get FASTA)	NCBI Sequence Viewer
	EDM16776	(Get FASTA)	NCBI Sequence Viewer
	EDM16777	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000062459
	ENSRNOP00000071300
	ENSRNOP00000071300.1

RefSeq Acc Id:	NP_001101561 ⟸ NM_001108091
- Peptide Label:	isoform 2
- UniProtKB:	D3ZGU2 (UniProtKB/TrEMBL), A6IGC2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKPSWLQCRKVTGAGTLGAPLPGSPSVRGAGVARRALVAGFGGRGCRALTTSSGGGEYKTHFAA SVADPERFWGKAAEQISWYKPWTKTLENRYPPSTSWFVEGMLNICYNAIDRHIENGQGDKIAII YDSPVTDTKATISYKEVLEQVSKLAGVLVKQGVKKGDTVVIYMPMIPQAIYAMLACARIGAIHS LIFGGFASKELSTRIDHVKPKVVVTASFGIEPGRKVEYMPLLEEALRIGQHKPDRLLIYNRPNM EKVPLMSGRDLDWEEEMAKAQSHDCVPVLSEHPLYILYTSGTTGLPKGVVRPTGGYAVMLNWTM SSIYGLKPGEVWWAASDLGWVVGHSYICYGPLLHGNTTVLYEGKPVGTPDAGAYFRVLAEHGVA ALFTAPTAIRAIRQQDPGAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTE TGSPITASCIGLGNSKTPPPGQAGKCVPGYNGSYLSYNSVMSLTSPAMKK hide sequence

RefSeq Acc Id:

XP_006241365 ⟸ XM_006241303

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLNICYNAIDRHIENGQGDKIAIIYDSPVTDTKATISYKEVLEQVSKLAGVLVKQGVKKGDTVV
IYMPMIPQAIYAMLACARIGAIHSLIFGGFASKELSTRIDHVKPKVVVTASFGIEPGRKVEYMP
LLEEALRIGQHKPDRLLIYNRPNMEKVPLMSGRDLDWEEEMAKAQSHDCVPVLSEHPLYILYTS
GTTGLPKGVVRPTGGYAVMLNWTMSSIYGLKPGEVWWAASDLGWVVGHSYICYGPLLHGNTTVL
YEGKPVGTPDAGAYFRVLAEHGVAALFTAPTAIRAIRQQDPGAALGKQYSLTRFKTLFVAGERC
DVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPPPGQAGKCVPGYNVMILDDNMQ
KLKARSLGNIVVKLPLPPGAFSGLWKNQEAFKHLYFEKFPGYYDTMDAGYMDEEGYLYVMSRVD
DVINVAGHRISAGAIEESVLSHGTVTDCAVVGKEDPLKGHVPLALCVLKKDVNATEEQVLEEIV
KHVRQSIGPVAAFRNAVFVKQLPKTRSGKIPRSTLSALVNGKPYKVTPTIEDPSIFGHIEEVLK
QAL

hide sequence

Ensembl Acc Id:

ENSRNOP00000071300 ⟸ ENSRNOT00000082141

Ensembl Acc Id:

ENSRNOP00000062459 ⟸ ENSRNOT00000066975

RefSeq Acc Id:	XP_038935035 ⟸ XM_039079107
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038935036 ⟸ XM_039079108
- Peptide Label:	isoform X2

RefSeq Acc Id:	NP_001401870 ⟸ NM_001414941
- Peptide Label:	isoform 1
- UniProtKB:	A0A0G2K047 (UniProtKB/Swiss-Prot)

Protein Domains

Acetyl-coenzyme A synthetase N-terminal AMP-dependent synthetase/ligase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K047-F1-model_v2	AlphaFold	A0A0G2K047	1-683	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695179

Promoter ID:

EPDNEW_R5704

Type:

initiation region

Name:

Acss3_1

Description:

acyl-CoA synthetase short-chain family member 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	49,250,877 - 49,250,937	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307051	AgrOrtholog
BioCyc Gene	G2FUF-34184	BioCyc
Ensembl Genes	ENSRNOG00000004448	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000066975	ENTREZGENE
	ENSRNOT00000082141	ENTREZGENE
	ENSRNOT00000082141.2	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.300.30	UniProtKB/Swiss-Prot
	3.40.50.12780	UniProtKB/Swiss-Prot
InterPro	ACAS_N	UniProtKB/Swiss-Prot
	AMP-bd_C	UniProtKB/Swiss-Prot
	AMP-bd_C_sf	UniProtKB/Swiss-Prot
	AMP-binding_CS	UniProtKB/Swiss-Prot
	AMP-dep_Synth/Lig	UniProtKB/Swiss-Prot
	AMP-dep_Synthh-like_sf	UniProtKB/Swiss-Prot
NCBI Gene	314800	ENTREZGENE
PANTHER	ACYL-COA SYNTHETASE	UniProtKB/Swiss-Prot
	ACYL-COA SYNTHETASE SHORT-CHAIN FAMILY MEMBER 3, MITOCHONDRIAL	UniProtKB/Swiss-Prot
Pfam	ACAS_N	UniProtKB/Swiss-Prot
	AMP-binding	UniProtKB/Swiss-Prot
	AMP-binding_C	UniProtKB/Swiss-Prot
PhenoGen	Acss3	PhenoGen
PROSITE	AMP_BINDING	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000004448	RatGTEx
Superfamily-SCOP	Acetyl-CoA synthetase-like	UniProtKB/Swiss-Prot
UniProt	A0A0G2K047	ENTREZGENE
	A6IGC2	ENTREZGENE, UniProtKB/TrEMBL
	ACSS3_RAT	UniProtKB/Swiss-Prot
	D3ZGU2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-05-26	Acss3	acyl-CoA synthetase short-chain family member 3	RGD1307051	similar to hypothetical protein FLJ21963	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1307051	similar to hypothetical protein FLJ21963	RGD1307051_predicted	similar to hypothetical protein FLJ21963 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1307051_predicted	similar to hypothetical protein FLJ21963 (predicted)	LOC314800_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC314800_predicted	similar to hypothetical protein FLJ21963 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - SMPDB