Mcs6 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Mcs6 (Mammary carcinoma susceptibility QTL 6) Rattus norvegicus

Symbol: Mcs6
Name: Mammary carcinoma susceptibility QTL 6
RGD ID: 70190
Trait: mammary gland integrity trait   (VT:0010552)    
Measurement Type: mammary tumor number   (CMO:0000343)    
LOD Score: 2.29
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2726,737,401 - 63,902,784RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0733,044,449 - 71,352,127RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0733,124,095 - 71,522,360RGDRnor5.0
RGSC_v3.4729,204,226 - 68,057,251RGDRGSC3.4
RGSC_v3.1729,224,498 - 68,077,981RGD
Cross Type: Not Available
Strains Crossed: WKY/NHsd WF/NHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
WF/NHsd  (IEA)
WKY/NHsd  (IEA)

References

Related QTLs

Related QTL Description Reference
Mcs2 sub_region RGD:5133689


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3086KitlgKIT ligand73489607534977215Rat
69065Pawrpro-apoptotic WT1 regulator74364502843725033Rat
3135Myo1amyosin IA76354298863557944Rat
71094Nap1l1nucleosome assembly protein 1-like 174693327846957853Rat
619774Wif1Wnt inhibitory factor 175654805856618364Rat
62391Ddit3DNA-damage inducible transcript 376311564563121203Rat
61895Dcndecorin73228125232321291Rat
61950Csrp2cysteine and glycine-rich protein 274634910946367743Rat
70978Dusp6dual specificity phosphatase 673409284834097186Rat
70995Metap2methionyl aminopeptidase 272841277128440458Rat
2866Ifnginterferon gamma75390333953907375Rat
61903Gpr182G protein-coupled receptor 18276358599763589088Rat
3026Lyz2lysozyme 275290681052912154Rat
2185Avpr1aarginine vasopressin receptor 1A75811430658118230Rat
69192Cyp27b1cytochrome P450, family 27, subfamily b, polypeptide 176286934062876242Rat
3134Myf6myogenic factor 674281300842814852Rat
3691Slc16a7solute carrier family 16 member 776104366761211547Rat
3803Syt1synaptotagmin 174381320444358020Rat
3836Phlda1pleckstrin homology-like domain, family A, member 174696743346969637Rat
628795Usp15ubiquitin specific peptidase 1575875671458848778Rat
621667Grip1glutamate receptor interacting protein 175493485655592274Rat
620301Aviladvillin76282545962844103Rat
631332Tph2tryptophan hydroxylase 275068569450789424Rat
68363Halhistidine ammonia lyase72800744928037701Rat
620650Rab3ipRAB3A interacting protein75253146152575295Rat
620984Lumlumican73235899032365794Rat
621355Nudt4nudix hydrolase 473018810030204620Rat
628829Kcnc2potassium voltage-gated channel subfamily C member 274770003547883979Rat
621711Pip4k2cphosphatidylinositol-5-phosphate 4-kinase type 2 gamma76302000463035086Rat
628844Agap2ArfGAP with GTPase domain, ankyrin repeat and PH domain 276289728262914295Rat
628723Nxph4neurexophilin 476336775863376579Rat
620728Kcnmb4potassium calcium-activated channel subfamily M regulatory beta subunit 475206614552119098Rat
620013Ppp1r12aprotein phosphatase 1, regulatory subunit 12A74348280843593689Rat
620577Rap1bRAP1B, member of RAS oncogene family75342303953456388Rat
621612Ntsneurotensin73756494437574350Rat
621303Atp2b1ATPase plasma membrane Ca2+ transporting 173373559533845226Rat
621256Lin7alin-7 homolog A, crumbs cell polarity complex component74258670442742609Rat
620780Ptprrprotein tyrosine phosphatase, receptor type, R75166259551929605Rat
621120Cdk4cyclin-dependent kinase 476288564762889562Rat
621160Nup107nucleoporin 10775335374053398345Rat
621194Inhbcinhibin subunit beta C76318414163197630Rat
621196Inhbeinhibin subunit beta E76317755863178983Rat
620479Cand1cullin-associated and neddylation-dissociated 175468111454719002Rat
620779Ptprqprotein tyrosine phosphatase, receptor type, Q74283710943016917Rat
728895Trhdethyrotropin-releasing hormone degrading enzyme74994327150367371Rat
620617Hmga2high mobility group AT-hook 275587714555998813Rat
1303150Rab21RAB21, member RAS oncogene family75090405050928890Rat
1304915Mrpl42mitochondrial ribosomal protein L4273011797730141757Rat
3809Tac3tachykinin precursor 376356255263569170Rat
1307051Acss3acyl-CoA synthetase short-chain family member 374224126142450230Rat
735158Mterf3mitochondrial transcription termination factor 376382641863844747Rat
621096Ube2nubiquitin-conjugating enzyme E2N73015433030184373Rat
735050Rdh16retinol dehydrogenase 1676361672463624120Rat
2224Btg1BTG anti-proliferation factor 173134139131343649Rat
735173Tmbim4transmembrane BAX inhibitor motif containing 475571869055733277Rat
3200Nr2c1nuclear receptor subfamily 2, group C, member 172871534728768624Rat
621673Gli1GLI family zinc finger 176315692663169579Rat
621783Tspan8tetraspanin 875144494651479360Rat
69273Socs2suppressor of cytokine signaling 273000636030045161Rat
735209Tmem19transmembrane protein 1975095888751007974Rat
1304640Cpsf6cleavage and polyadenylation specific factor 675295658953001783Rat
621329Rassf9Ras association domain family member 973759972037631553Rat
1307420Plxnc1plexin C172939003829543985Rat
2273Alx1ALX homeobox 173815762638177220Rat
735210Arhgef25Rho guanine nucleotide exchange factor 2576300593863013325Rat
1305255Tbc1d30TBC1 domain family, member 3075677957056869092Rat
1305562Xpotexportin for tRNA75711153657151847Rat
1305439Best3bestrophin 375258682452656776Rat
1306474RGD1306474similar to RIKEN cDNA 9530003J2375287584252880716Rat
1305741Yeats4YEATS domain containing 475285831352865454Rat
1305816Kerakeratocan73239738232404837Rat
1306259Nav3neuron navigator 374505220645840471Rat
1306351Tmtc3transmembrane O-mannosyltransferase targeting cadherins 373526488635310010Rat
1306282RGD1306282similar to RIKEN cDNA 4432406C0575355337853570587Rat
1306287Zfc3h1zinc finger, C3H1-type containing75100825151064666Rat
1307241Tmcc3transmembrane and coiled-coil domain family 372889397229171935Rat
1305021Ppfia2PTPRF interacting protein alpha 274176571642240104Rat
1307358Lrrc10leucine-rich repeat-containing 1075268697252688369Rat
1306532Zbtb39zinc finger and BTB domain containing 3976357703063584527Rat
1305877Gnsglucosamine (N-acetyl)-6-sulfatase75688913956923170Rat
1305332Mdm2MDM2 proto-oncogene75329066053315205Rat
1305904Epycepiphycan73243662032474326Rat
1307733Lgr5leucine rich repeat containing G protein coupled receptor 575108705951221882Rat
1305342Arhgap9Rho GTPase activating protein 976314857363157025Rat
628664Slc6a15solute carrier family 6 member 1573855305538607239Rat
1307750Nedd1NEDD1 gamma-tubulin ring complex targeting factor72723331527274486Rat
1307764Elk3ETS transcription factor ELK372776858227831088Rat
1305922Ptprbprotein tyrosine phosphatase, receptor type, B75195337552034751Rat
1311050Mbd6methyl-CpG binding domain protein 676310756263115841Rat
1310205Glipr1l2GLIPR1 like 274753300947546737Rat
1308949Ptdss1phosphatidylserine synthase 176384501763906791Rat
1303035Kif5akinesin family member 5A76305189463089024Rat
620490B4galnt1beta-1,4-N-acetyl-galactosaminyl transferase 176298842962996190Rat
1309876Tspan31tetraspanin 3176288955262892428Rat
1311462Ndufa12NADH:ubiquinone oxidoreductase subunit A1272877133028798316Rat
1311971Uqcrbubiquinol-cytochrome c reductase binding protein76381478463820150Rat
631370Rdh7retinol dehydrogenase 776367601663689375Rat
1311333Lta4hleukotriene A4 hydrolase72796979628001600Rat
1312039Dyrk2dual specificity tyrosine phosphorylation regulated kinase 275434872454381363Rat
1308322Myf5myogenic factor 574280294642806177Rat
1311640Cep290centrosomal protein 29073531007135399392Rat
1311450Rassf3Ras association domain family member 375693589457000591Rat
1311712Nab2Ngfi-A binding protein 276349758963504105Rat
1310066R3hdm2R3H domain containing 276321251963340574Rat
1307871Mgat4cMGAT4 family, member C73670956437485810Rat
1308216Usp44ubiquitin specific peptidase 4472836416928412039Rat
1307535Lrp1LDL receptor related protein 176338032563461029Rat
1309848Tmtc2transmembrane O-mannosyltransferase targeting cadherins 274039237740806685Rat
1305978Glipr1GLI pathogenesis-related 174748734247498974Rat
1308201Frs2fibroblast growth factor receptor substrate 275271125552792758Rat
1308261LlphLLP homolog, long-term synaptic facilitation factor75573531755740341Rat
1309826Caps2calcyphosine 274758063647641598Rat
1309063Stat6signal transducer and activator of transcription 676348022963497551Rat
1310167Eea1early endosome antigen 173055468630722186Rat
1309356Rxylt1ribitol xylosyltransferase 175777084157782695Rat
1305321Mars1methionyl-tRNA synthetase 176312114263138550Rat
1306183Krr1KRR1, small subunit processome component homolog74747555747486996Rat
1310258E2f7E2F transcription factor 774615053346192739Rat
1308846Irak3interleukin-1 receptor-associated kinase 375565394955714371Rat
1310270Mettl25methyltransferase like 2574106227641143056Rat
1310532Cpmcarboxypeptidase M75322564753286220Rat
1307947RGD1307947similar to RIKEN cDNA C430008C1973539687635408633Rat
1308879Amdhd1amidohydrolase domain containing 172804392328059156Rat
1308964Stac3SH3 and cysteine rich domain 376334307863350590Rat
1307920Tbc1d15TBC1 domain family, member 1575080455350860272Rat
1308808Mon2MON2 homolog, regulator of endosome-to-Golgi trafficking75864937858728102Rat
1308582Shmt2serine hydroxymethyltransferase 276335896163364293Rat
1309528Ppm1hprotein phosphatase, Mg2+/Mn2+ dependent, 1H75833866158599547Rat
1564883RGD1564883similar to 60S ribosomal protein L1275236672652367448Rat
1565498Kics2KICSTOR subunit 275728421357299070Rat
1561812RGD1561812similar to Retinol dehydrogenase type II (RODH II) (29 k-protein)76364230563645149Rat
1564589Galnt4polypeptide N-acetylgalactosaminyltransferase 473392522933927770Rat
1564046Ccdc38coiled-coil domain containing 3872805588328129938Rat
1311912Ccdc59coiled-coil domain containing 5974114276041149143Rat
1561474Osbpl8oxysterol binding protein-like 874659694446749888Rat
1565753RGD1565753similar to citrate synthase73458393234704321Rat
1563000Glipr1l1GLIPR1 like 174755063747577611Rat
1560867LOC500846hypothetical protein LOC50084676167649261710711Rat
1311010CraddCASP2 and RIPK1 domain containing adaptor with death domain72994024029952907Rat
1560042Ccer1coiled-coil glutamate-rich protein 173248506332521296Rat
1560103HelbDNA helicase B75558851055615979Rat
1565947Ntn4netrin 472818661128300390Rat
1561871RGD1561871similar to ribosomal protein S1075677264656773237Rat
1564851Slc26a10solute carrier family 26, member 1076299516563005099Rat
1311672Cnot2CCR4-NOT transcription complex, subunit 275213044452222338Rat
1561092Mdm1Mdm1 nuclear protein75372960353766034Rat
1560748Bbs10Bardet-Biedl syndrome 1074675102846754132Rat
628716Sdr9c7short chain dehydrogenase/reductase family 9C, member 776370378863720325Rat
1562127Myrflmyelin regulatory factor-like75240332452519907Rat
1303182Dctn2dynactin subunit 276309206163107560Rat
1559995RGD1559995similar to developmental pluripotency associated 576252504462526042Rat
1564903Lrriq1leucine-rich repeats and IQ motif containing 173831725938409885Rat
1359574Os9OS9, endoplasmic reticulum lectin76291549862957591Rat
1565358Ndufa13-ps1NADH:ubiquinone oxidoreductase subunit A13, pseudogene 173037013930370634Rat
1566260Srgap1SLIT-ROBO Rho GTPase activating protein 175732953257594681Rat
1587179Nemp1nuclear envelope integral membrane protein 176351402563538791Rat
1561292Il22interleukin 2275380120653805673Rat
1563125LOC500827similar to hypothetical protein FLJ3582173540614735443324Rat
1564876Slc35e3solute carrier family 35, member E375333709153350152Rat
1359143Cct2chaperonin containing TCP1 subunit 275269272552705478Rat
1565117RGD1565117similar to 40S ribosomal protein S2676298168762982757Rat
1561255Lrig3leucine-rich repeats and immunoglobulin-like domains 376181631361866275Rat
1561648RGD1561648RGD156164875717040657220930Rat
1562536LOC500845LRRG0013175995394059969343Rat
1562607Styx-ps1serine/threonine/tyrosine interacting protein, pseudogene 175636338956364593Rat
1565593Cdk17cyclin-dependent kinase 1772768389027765814Rat
1582946LOC688961similar to H3 histone, family 3B75252344852526265Rat
1565609Fgd6FYVE, RhoGEF and PH domain containing 672859760928712908Rat
1566181Dtx3deltex E3 ubiquitin ligase 376301376963018431Rat
1588587Atp23ATP23 metallopeptidase and ATP synthase assembly factor homolog76271475262729893Rat
1588588Tbk1TANK-binding kinase 175707783057110868Rat
1359593Cep83centrosomal protein 8372928035829389574Rat
1359117Veztvezatin, adherens junctions transmembrane protein72851221428597429Rat
1565866RGD1565866similar to FLJ44112 protein72731649827601630Rat
1588873LOC688415similar to pescadillo homolog 1, containing BRCT domain74647604946477682Rat
1590688Marchf9membrane associated ring-CH-type finger 976287901762882495Rat
1590711Eef1akmt3EEF1A lysine methyltransferase 376285330462864558Rat
1585306LOC688700similar to ADP-ribosylation factor 174972842149728965Rat
1589018Otoglotogelin-like74306580043211400Rat
1588229Snrpfsmall nuclear ribonucleoprotein polypeptide F72813042728137129Rat
1595789LOC366895similar to basic transcription factor 375054446450546990Rat
1595790Zdhhc17zinc finger DHHC-type palmitoyltransferase 1774636996346433691Rat
1595791LOC366884similar to 60S ribosomal protein L7a (Surfeit locus protein 3)74335243243353403Rat
1594496Vps54-ps1vacuolar protein sorting 54 homolog (S. cerevisiae), pseudogene 175783223557834588Rat
1594497LOC366901similar to ribosomal protein S1275482751854827910Rat
1598068LOC681203similar to peptidylprolyl isomerase D76327886463280213Rat
1597418LOC689068similar to mitochondrial ribosomal protein L4775284067952841539Rat
1595794LOC366878similar to eukaryotic translation elongation factor 1 alpha 273419847934205120Rat
1594372LOC500831similar to histone deacetylase 174463472444645145Rat
1596822Lemd3LEM domain containing 375641505356499047Rat
1589429Tafa2TAFA chemokine like family member 275894259859418640Rat
1597146LOC314776similar to Peptidyl-prolyl cis-trans isomerase A (PPIase) (Rotamase) (Cyclophilin A) (Cyclosporin A-binding protein) (P31) (p1B15)73355950233559989Rat
1596851Msrb3methionine sulfoxide reductase B375626098556426004Rat
1593616Lyc2lysozyme C type 275288688352894447Rat
1593036Mettl1methyltransferase like 176286481662869202Rat
1593058TsfmTs translation elongation factor, mitochondrial76282899762864784Rat
1596694LOC681396similar to Eukaryotic translation initiation factor 5 (eIF-5)74672305846724664Rat
1597472LOC689014similar to CG9987-PA75266985552671671Rat
1597486LOC689000similar to DJ-1 protein76270611562706995Rat
1595795LOC366877similar to tubulin, alpha 173417559134176932Rat
1596425Taf7l-ps1TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 175176325951764401Rat
2301984Atxn7l3bataxin 7-like 3B74832245148325975Rat
2319209Ctdsp2CTD small phosphatase 276280540062825306Rat
2318153LOC100362435coenzyme Q4 homolog (yeast)-like76295901462959701Rat
2318888LOC100362094ribosomal protein L27a-like74764285247675130Rat
2318367LOC100362318protein disulfide-isomerase A4-like75224120052242264Rat
2319089LOC100361991Protein Spindly-like74658565446590216Rat
2322070LOC100360486hypothetical LOC10036048672679781826798782Rat
2322266LOC100360387hypothetical LOC10036038775715622057157537Rat
2320737LOC100361123CWC15 homolog73199612932000031Rat
2323562LOC100363033hypothetical LOC10036303373548047435480916Rat
2324495LOC10036256040S ribosomal protein S21-like72826513528265549Rat
2323942Poc1bPOC1 centriolar protein B73392403534025908Rat
2324060LOC100362798ubiquinol-cytochrome c reductase subunit75487514454875314Rat
2325604Mirlet7imicroRNA let-7i75864248558642569Rat
2325619Mir331microRNA 33172852739028527485Rat
2324558Ndufa4l2NDUFA4, mitochondrial complex associated like 276335102163359010Rat
6488367LOC100912201ATP synthase subunit f, mitochondrial-like72925148529251828Rat
6488764LOC100912143uncharacterized LOC10091214373042696230453658Rat
6493321LOC10091142460S ribosomal protein L31-like74430012344300616Rat
6486766LOC100912511tubulin alpha-1C chain-like74856449248565895Rat
6498798LOC100910453voltage-dependent anion-selective channel protein 1-like73484100034841375Rat
6498316LOC100910482glyceraldehyde-3-phosphate dehydrogenase-like73752081437542239Rat
7514887LOC102549403uncharacterized LOC10254940375040092250423295Rat
7525893LOC102557532uncharacterized LOC10255753276270896262710729Rat
7542471LOC102547506uncharacterized LOC10254750675612579456140736Rat
7507440LOC102556473uncharacterized LOC10255647372969502029709955Rat
7520545LOC102553930elongation factor 1-alpha 1-like76322731663228116Rat
7665469LOC10254714360S ribosomal protein L6-like73067408830677692Rat
7638646LOC102551482uncharacterized LOC10255148275150810351519060Rat
7576392Plekhg7pleckstrin homology and RhoGEF domain containing G773072795230805866Rat
7654942LOC102552637uncharacterized LOC10255263776144449561496656Rat
7658882LOC102547595uncharacterized LOC10254759574397609244001594Rat
7628604LOC102552423uncharacterized LOC10255242376149810261533554Rat
7588949LOC102546610uncharacterized LOC10254661073020661730209678Rat
7570063LOC102549197uncharacterized LOC10254919776382025363826069Rat
7570684LOC102554269uncharacterized LOC10255426972901693629030555Rat
7617285LOC102555532uncharacterized LOC10255553273818259538191405Rat
7620450LOC102553539uncharacterized LOC10255353972799774428006748Rat
7544233LOC102547832uncharacterized LOC10254783276318123263182934Rat
7548711LOC102556382transmembrane emp24 domain-containing protein 2-like75776767257769695Rat
7552031LOC102550725uncharacterized LOC10255072573133887031341029Rat
7585987LOC102549372proteasome subunit alpha type-4-like73011518130117547Rat
7751615LOC102546992uncharacterized LOC10254699273042347630432798Rat
7693286LOC102556774uncharacterized LOC10255677473014966130153451Rat
7695057LOC102552186uncharacterized LOC10255218676097594361088913Rat
7677619LOC102551386uncharacterized LOC10255138675149007851494499Rat
7677968LOC102549309uncharacterized LOC10254930975596419955977306Rat
7678454LOC102547249uncharacterized LOC10254724975599824456005560Rat
7725676LOC102550659uncharacterized LOC10255065975351829153525492Rat
7733495LOC102550469NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-like75344091753441370Rat
7718419LOC102551023uncharacterized LOC10255102375371786953729789Rat
7721657LOC102548498uncharacterized LOC10254849874688330346907932Rat
7709076LOC102546573uncharacterized LOC10254657374841026548417520Rat
7727462LOC102548950uncharacterized LOC10254895072783371927839466Rat
7680912LOC102551387uncharacterized LOC10255138775462867154668020Rat
7710554LOC102550217uncharacterized LOC10255021775316179253172907Rat
7728983LOC102548561uncharacterized LOC10254856174720865647220235Rat
7729702LOC102548848uncharacterized LOC10254884872765018027669365Rat
9159198LOC103692824NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial pseudogene72835176828352101Rat
9117410LOC103692876small ubiquitin-related modifier 2 pseudogene75387473853875151Rat
9391515LOC10369283160S ribosomal protein L3972983493329835295Rat
9406127LOC103692856nuclear cap-binding protein subunit 2 pseudogene75073889650747463Rat
9445936LOC103690238uncharacterized LOC10369023873782986337834663Rat
9447173LOC103692848lys-63-specific deubiquitinase BRCC36-like74401488944017678Rat
9417884LOC103692846sulfotransferase 1C2 pseudogene74225480842256182Rat
9685075Snora19small nucleolar RNA, H/ACA box 1975878050358780571Rat
10395318Cep83oscentrosomal protein 83, opposite strand72926076729280248Rat
11462120LOC10835161960S ribosomal protein L13 pseudogene73205808732058762Rat
11463103LOC108351469uncharacterized LOC10835146975847271758482369Rat
11465430LOC108351474glyceraldehyde-3-phosphate dehydrogenase-like76313856463142507Rat
11466148LOC108351468SNRPN upstream reading frame protein pseudogene75871471358716587Rat
11428166LOC108351461uncharacterized LOC10835146175333234453341706Rat
11366819LOC108351599uncharacterized LOC10835159974411558144131166Rat
11429701LOC108351463uncharacterized LOC10835146375367989253695346Rat
11452399Trnad-guc2transfer RNA aspartic acid (anticodon GUC) 272796938427969455Rat
11431842LOC108351450uncharacterized LOC10835145074744578247461331Rat
11383424LOC10835161760S ribosomal protein L15-like73095126730951881Rat
11414169LOC108351454uncharacterized LOC10835145474941918049434582Rat
11427685LOC108351449uncharacterized LOC10835144974732740847337493Rat
11386103LOC108351618glyceraldehyde-3-phosphate dehydrogenase pseudogene73139002831391014Rat
11409121LOC108351437glyceraldehyde-3-phosphate dehydrogenase pseudogene73164368331650688Rat
11410267LOC108351455heterogeneous nuclear ribonucleoprotein A3-like75104580151047650Rat
11399049LOC108351471uncharacterized LOC10835147176268101762702138Rat
11399716LOC108351472uncharacterized LOC10835147276280038462804985Rat
11389551LOC108351462uncharacterized LOC10835146275361951753629569Rat
11378564LOC108351620glyceraldehyde-3-phosphate dehydrogenase pseudogene73503085535032582Rat
11501359LOC108351432uncharacterized LOC10835143272959175729593257Rat
11502995LOC108351467uncharacterized LOC10835146775608042056091186Rat
11512900LOC108351445uncharacterized LOC10835144573473581934739819Rat
41354498LOC120093599uncharacterized LOC12009359975267695752685404Rat
41136792LOC120093582uncharacterized LOC12009358274374690243769702Rat
41235005LOC120093574glyceraldehyde-3-phosphate dehydrogenase-like73753865637541646Rat
41235016LOC120093617uncharacterized LOC12009361775651237956527620Rat
41275865LOC120093950small nucleolar RNA SNORD5674872207948722132Rat
41355956LOC120093594uncharacterized LOC12009359475186252251881220Rat
41087577LOC120093807protein NYNRIN-like76368255763684405Rat
41324281LOC120093609uncharacterized LOC12009360975440855354439053Rat
41089710LOC120093959small nucleolar RNA SNORA4475101910851019230Rat
41113964LOC120093938U7 small nuclear RNA75147428051474337Rat
41251481LOC120093573uncharacterized LOC12009357373655304036571045Rat
41325648NEWGENE_40933693transfer RNA proline (anticodon GGG)73534918335349263Rat
41359680LOC120093628uncharacterized LOC12009362876275332662760239Rat
41090800LOC120093075retinol dehydrogenase 16-like76360472863613424Rat
41115284LOC120093579uncharacterized LOC12009357974057015840572279Rat
41116110LOC120093604swi5-dependent recombination DNA repair protein 1 homolog75345838153461341Rat
41207487LOC120093800uncharacterized LOC12009380074435876544363310Rat
41286435LOC120093600uncharacterized LOC12009360075279287152805208Rat
41286759LOC120093990small nucleolar RNA SNORA1773055782230557964Rat
41286787LOC120093871protein crumbs homolog 1-like75958331659598561Rat
41386114LOC120094015small nucleolar RNA SNORA7972723688927237031Rat
41092649LOC120093560uncharacterized LOC12009356072937862429382893Rat
41208259LOC120093590uncharacterized LOC12009359075043309750440570Rat
41254183LOC120093847uncharacterized LOC12009384772693764326943644Rat
41327720LOC120093901U6 spliceosomal RNA73865725238657356Rat
41388923LOC120093610uncharacterized LOC12009361075473125654749431Rat
41119690LOC120093566uncharacterized LOC12009356673223801332280947Rat
41175614LOC120093848glyceraldehyde-3-phosphate dehydrogenase-like73118736731188483Rat
41175762LOC120093572uncharacterized LOC12009357273498256934988018Rat
41210402LOC120093928U6 spliceosomal RNA74633498146335086Rat
41211178LOC120093965small nucleolar RNA SNORA4874694066446940806Rat
41260607LOC120093614uncharacterized LOC12009361475597827655988331Rat
41364186LOC120093552uncharacterized LOC12009355272734776827351084Rat
41120201LOC120093592uncharacterized LOC12009359275152912251541332Rat
41120395LOC120093598uncharacterized LOC12009359875263629252640179Rat
41120670NEWGENE_6576114transfer RNA threonine (anticodon AGU)75036331750363395Rat
41212204LOC120093130citrate synthase, mitochondrial-like73459897834601654Rat
41365425LOC120093575uncharacterized LOC12009357573811435138131730Rat
41097296LOC120093861RNA-binding protein EWS-like73081892130820102Rat
41121043LOC120093583uncharacterized LOC12009358374642615046433558Rat
41150806LOC120093616uncharacterized LOC12009361675617856356194792Rat
41153677LOC120093553uncharacterized LOC12009355372782041927823060Rat
41343062LOC120093584uncharacterized LOC12009358474637888546381750Rat
41366535LOC120093586uncharacterized LOC12009358674667307546678086Rat
41098017LOC120093919U6 spliceosomal RNA74817766848177762Rat
41098039LOC120093624uncharacterized LOC12009362475952784359540971Rat
41179485LOC120093869sentrin-specific protease 2-like75770148357703091Rat
41214652NEWGENE_40926764transfer RNA proline (anticodon AGG)75110298851103061Rat
41265557LOC120093558uncharacterized LOC12009355872924232229247760Rat
41368650LOC120093977small nucleolar RNA SNORA4874371172743711871Rat
41394217LOC120093612uncharacterized LOC12009361275488826954901551Rat
41180745LOC120093589uncharacterized LOC12009358975035015950370342Rat
41181410LOC120093605uncharacterized LOC12009360575347407453477118Rat
41181996LOC120093613uncharacterized LOC12009361375591315555941962Rat
41395832LOC120093971small nucleolar RNA SNORA4873510229035102431Rat
41268730LOC120093851uncharacterized LOC12009385175420826754212875Rat
41289757LOC120093564uncharacterized LOC12009356473163413431640133Rat
41291036LOC120093570uncharacterized LOC12009357073430133934326597Rat
41346314LOC120093850MICOS complex subunit Mic10-like75107619551079347Rat
41370833LOC120093563uncharacterized LOC12009356373004575430047394Rat
41371502LOC120093806retinol dehydrogenase 7-like76359739663600224Rat
41397689LOC120093603uncharacterized LOC12009360375322943553235643Rat
41103456LOC120093607uncharacterized LOC12009360775349040553495755Rat
41127317LOC120093863glyceraldehyde-3-phosphate dehydrogenase-like73785455637877833Rat
41127999LOC120093601uncharacterized LOC12009360175303123153044412Rat
41270314LOC120093565uncharacterized LOC12009356573208380432101743Rat
41348715LOC120093805uncharacterized LOC12009380576344527163453892Rat
41373641LOC120093849uncharacterized LOC12009384973211987632128347Rat
41128408LOC120094005small nucleolar RNA SNORA1773828218338282302Rat
41197857LOC120093568guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5-like73390583133906268Rat
41271448LOC120093571uncharacterized LOC12009357173464404534660640Rat
41349511LOC120093868sentrin-specific protease 2-like75767292357674377Rat
41374847LOC120093989small nucleolar RNA SNORA1775611925456119374Rat
41375035LOC120093987small nucleolar RNA SNORA1775967884959678980Rat
41072814LOC120093559uncharacterized LOC12009355972954374029548701Rat
41081941LOC120093569uncharacterized LOC12009356973410728734116573Rat
41106785LOC120094036U2 spliceosomal RNA73119009831190164Rat
41130914LOC120093622translation initiation factor IF-2-like75864181658646386Rat
41163580LOC120093602uncharacterized LOC12009360275315392053159148Rat
41273020LOC120093145leucine-rich repeat and IQ domain-containing protein 1-like73819159538317201Rat
41351791LOC120093803uncharacterized LOC12009380375509261455101337Rat
41375281LOC120093587uncharacterized LOC12009358774734474247363207Rat
41082719LOC120094000small nucleolar RNA SNORA1774034457540344707Rat
41320150LOC120093593uncharacterized LOC12009359375192974651943054Rat
41084931LOC12009359139S ribosomal protein L50, mitochondrial-like75119307151213603Rat
41109545LOC120093873retinol dehydrogenase 16-like76362868663638448Rat
41165622LOC120093862transaldolase-like73150690531508727Rat
41166350LOC120093606uncharacterized LOC12009360675346869753474503Rat
40972102LOC120093596uncharacterized LOC12009359675231948552323305Rat
40973776LOC120093620uncharacterized LOC12009362075733351357348361Rat
40974068LOC120093619uncharacterized LOC12009361975686911656871824Rat
40952871LOC120093870basic proline-rich protein-like75944207559443292Rat
40976615LOC120093993small nucleolar RNA SNORA1773252924032529384Rat
40927711LOC120093588uncharacterized LOC12009358874749910847512987Rat
40928360LOC1200938965S ribosomal RNA76384051063840625Rat
40957379LOC120093578uncharacterized LOC12009357874076494240789988Rat
41002557LOC120093555proteasome subunit beta type-3-like72795525027957768Rat
40933449LOC120094035U2 spliceosomal RNA73147611531476221Rat
40960293LOC120093898U6 spliceosomal RNA74056870340568801Rat
41006911LOC120093866glyceraldehyde-3-phosphate dehydrogenase-like75438234054384816Rat
40962455LOC120093798serine/Arginine-related protein 53-like73706576737071635Rat
40962771LOC120093799uncharacterized LOC12009379974380844543814458Rat
40988719LOC120093981small nucleolar RNA SNORA1776268242462682554Rat
40938680LOC120093567uncharacterized LOC12009356773254061432737507Rat
40939206LOC120093872ferritin light chain 1-like76082544560837640Rat
40991469LOC120093554uncharacterized LOC12009355472792595927936004Rat
40991943LOC120093626uncharacterized LOC12009362676193670861940112Rat
40969194LOC120094001small nucleolar RNA SNORA1774245986042459990Rat
40943516LOC120093867sentrin-specific protease 2-like75760698957608641Rat
41075389LOC120093627uncharacterized LOC12009362776262278762636248Rat
41024473LOC120094007U1 spliceosomal RNA73969504839695208Rat
41049173LOC120094025U2 spliceosomal RNA73194920631949396Rat
41075487LOC120093623small nuclear ribonucleoprotein-associated protein N-like75871471358725898Rat
41050361LOC120093580uncharacterized LOC12009358074281525443016555Rat
41078854LOC120093967small nucleolar RNA SNORA4873856412838564271Rat
41246595LOC120093611uncharacterized LOC12009361175476188254772641Rat
41028082LOC120093907U6 spliceosomal RNA73909235839092466Rat
41052312LOC120093802uncharacterized LOC12009380275535615855359497Rat
41319368LOC120093615uncharacterized LOC12009361575617003956172387Rat
41135449LOC120093865basic proline-rich protein-like75354472253546293Rat
41254759LOC120093576uncharacterized LOC12009357673856646538568470Rat
41054798LOC120093925U6 spliceosomal RNA74655878746558886Rat
41152665LOC120094046U5 spliceosomal RNA74265756642657674Rat
41267854LOC120093562uncharacterized LOC12009356272977912729793246Rat
41032554LOC120093864barrier-to-autointegration factor-like74027746640277911Rat
41222853LOC120093625uncharacterized LOC12009362576107541061098225Rat
41223171LOC120093629uncharacterized LOC12009362976298519462988962Rat
41034435NEWGENE_6576114transfer RNA threonine (anticodon AGU)76256550262565574Rat
41225140LOC120093621sentrin-specific protease 2-like75774299757743814Rat
41337737LOC120093577uncharacterized LOC12009357773951493539526972Rat
41061317LOC120093899U6 spliceosomal RNA75312126853121371Rat
41062939LOC120093597forkhead box protein D1-like75257457452580147Rat
41225766LOC120093808retinol dehydrogenase 7-like76365723663657675Rat
41302345LOC120093556uncharacterized LOC12009355672854394228546950Rat
41062969LOC120093618uncharacterized LOC12009361875664721756648890Rat
41303428LOC120093804uncharacterized LOC12009380476319268763199370Rat
41016237LOC120093975small nucleolar RNA SNORA4875293013352930274Rat
41236746LOC120093801uncharacterized LOC12009380174505690445073781Rat
41304359LOC120093608uncharacterized LOC12009360875370698953713032Rat
41017733LOC120093585uncharacterized LOC12009358574655092746568690Rat
41067915LOC120093917U6 spliceosomal RNA76323651363236622Rat
41067918LOC120093595uncharacterized LOC12009359575189986351919776Rat
41240014LOC12009355760S ribosomal protein L31-like72917831129180418Rat
41309000LOC120093561dnaJ homolog subfamily C member 30, mitochondrial-like72996842929972525Rat
41045788LOC120093996U1 spliceosomal RNA74832846248328620Rat
41023123LOC12009358160S ribosomal protein L26-like74370389943716963Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10221D7Arb1775811322458113450Ratregion
10880D7Mgh2212475288832652888450Ratregion
34051D7Mit2824872673740126737633Ratregion
34055D7Mit2214473320007033200212Ratregion
34634D4Mgh538375811434658114729Ratregion
33664D7Mit725973131025731310525Ratregion
36099D7Rat2515775679321056793354Ratregion
36263D7Rat2915673085810830858274Ratregion
36317D7Rat16617475922594759226115Ratregion
37236D7Rat5112674725178347251899Ratregion
37256D7Rat10614974391053643910683Ratregion
37258D7Rat10721474442107944421311Ratregion
37270D7Rat7622873106006631060306Ratregion
37370D13Rat7920472882132728821522Ratregion
35180D7Rat4317076173665261736830Ratregion
37004D7Rat18118173807380838073970Ratregion
37772DXRat5327973910017639100207Ratregion
37838D7Rat7513376377335763773500Ratregion
37838D7Rat7513376376898163769114Ratregion
36691D7Rat2716072940968329409863Ratregion
36715D7Rat3013672782894927829089Ratregion
34789D7Rat4613174875897948759110Ratregion
34920D7Rat2813073146824031468378Ratregion
34999D7Rat4416276200445262004598Ratregion
35749D7Rat4517476390260863902784Ratregion
39614D7Rat16723775310609653106333Ratregion
39884D7Rat16921174771946647719673Ratregion
38002D4Rat9121873577173435771942Ratregion
38198D7Rat6923076046045260460686Ratregion
38376D7Rat10924872687820826878468Ratregion
40552D7Rat15115772765456927654716Ratregion
38630D7Rat10424972741134427411573Ratregion
38754D7Rat5721775920106959201286Ratregion
38766D7Rat8923373133391731334150Ratregion
40058D7Rat14615075361691753617069Ratregion
38794D7Rat7323375361271453612950Ratregion
39008D7Rat9213073023913030239258Ratregion
39012D7Rat9824674975349649753746Ratregion
39016D7Rat10320074110969241109925Ratregion
39094D7Rat5824575826487858265113Ratregion
42215D7Arb168774374701243747099Ratregion
42821D7Rat18224873052789030528146Ratregion
42822D7Rat21414772782892127829070Ratregion
42823D7Rat21324973274870732748961Ratregion
42824D7Rat18013773390791133908054Ratregion
42826D7Rat21014974643188446432023Ratregion
42828D7Rat20920375762948357629662Ratregion
42830D7Rat20724175664188756642142Ratregion
42831D7Rat22814975797580457975951Ratregion
41252D7Rat14915872989088329891047Ratregion
42336D7Rat22223972975750429757737Ratregion
42337D7Rat22124373878749838787728Ratregion
42339D7Rat22024775853205558532298Ratregion
42340D7Rat23014676329436763294498Ratregion
40812D7Rat8322273480105234801270Ratregion
40862D7Rat14511876129036361290481Ratregion
41106D7Rat14714674659953146599681Ratregion
41542D7Rat15017073007389030074080Ratregion
44233D7Got1827772742017327420450Ratregion
44234D7Got1918672865252928652715Ratregion
44235D7Got2212172906271929062840Ratregion
44237D7Got2310572999644729996552Ratregion
44238D7Got2114973087138230871533Ratregion
44239D7Got2015873131031531310473Ratregion
44240D7Got2629273210482332105115Ratregion
44241D7Got2815773250339032503549Ratregion
44242D7Got2716973320005833200227Ratregion
44243D7Got2424672972937029729615Ratregion
44244D7Got2514373356985933570002Ratregion
44245D7Got3025873465726534657523Ratregion
44246D7Got2924973465726534657514Ratregion
44247D7Got3213073665550336655633Ratregion
44248D7Got3114973665549736655643Ratregion
44249D7Got3416774133691041337077Ratregion
44250D7Got3715474049899340499147Ratregion
44251D7Got15725174410810444108355Ratregion
44252D7Got3321474530844145308655Ratregion
44253D7Got8328574796220047962485Ratregion
44255D7Got3912874913859049138718Ratregion
44256D7Got919974887586048875959Ratregion
44257D7Got8017175003291450033085Ratregion
44258D7Got14816675141562751415793Ratregion
44259D7Got4016775410309154103255Ratregion
44262D7Got4426075852809758528354Ratregion
44265D7Got4126475485817054858434Ratregion
44266D7Got4924775476962754769874Ratregion
44267D7Got4814275814366558143807Ratregion
60575D7Got4717275677175456771926Ratregion
60571D7Got3519274552504745525239Ratregion
60572D7Got3618674044426440444450Ratregion
60574D7Got4318475665361656653800Ratregion
67815D7Uwm1114074659587446596030Ratregion
629585D7Got4514875661217156612319Ratregion
61292D7Uwm914373552616135526300Ratregion
62504D7Uia313074133367441333804Ratregion
66379D7Uia539176137158761371978Ratregion
67753D7Uwm2033375863234358632680Ratregion
67791D7Uwm817972882470428824885Ratregion
1631140D7Got21014476247463062474774Ratregion
1632072D7Wox3312674994751949947647Ratregion
1632357D7Got22918376161027161610449Ratregion
1579067D10Chm25021875014650150146536Ratregion
1628011D7Got20910776081152960811636Ratregion
1628211D7Wox3536673489495934895325Ratregion
1629834D7Got23927176356929563569566Ratregion
1639140D7Wox3923675291295652913192Ratregion
1641372D7Got2089776015611560156212Ratregion
1632848D7Got23715675168505351685209Ratregion
1632961D7Got23018374654194146542119Ratregion
1633105D7Got22620475762954557629747Ratregion
1633564D7Got20723775518545355185690Ratregion
1639913D7Wox5273004096630041111Ratregion
1640450D7Got25611473871028438710398Ratregion
1640598D7Got25225676090697860907234Ratregion
1635672D7Got23617574265634842656521Ratregion
1635752D7Got20617575539314155393316Ratregion
1636569D7Got21916473570343235703591Ratregion
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1636907D7Got23122875479095254791180Ratregion
1637355D7Got22521773124290831243116Ratregion
1637384D7Wox3675811321258113629Ratregion
1637797D7Got23223176257861262578840Ratregion
1638267D7Got24210974657039846570507Ratregion
2315416D16Nkg10415174454157144541728Ratregion
7205956Dyrk249775435474354355240Ratregion
7205998Avil11376282963662831041Ratregion
7206048Tmed239275776912957769525Ratregion
7206060Tmed237875776918257769564Ratregion
7191287Myf591374280466842805581Ratregion
7193117Myf6074281358642814006Ratregion
7206422stm546acag-7A075586498355866413Ratregion
5035759WI-1975125475269275052693004Ratregion
5036141D10Wsu93e25176310766163107912Ratregion
5038946RH12742319472938916729389361Ratregion
7206518UniSTS:54684293475108878451089718Ratregion
5036223RH12564827475121044851210722Ratregion
5039172RH12755320876291735262917560Ratregion
5036470Ptprq63374284348242844115Ratregion
5036609AU04858517676172405261724228Ratregion
5037101A008W0510275729563457295736Ratregion
5037161RH7854916374381338243813545Ratregion
5031306PMC133987P134976336376763364116Ratregion
5028647RH12578112076335916063359280Ratregion
5031522AU04805112775240113752401264Ratregion
5034127RH14146418475565403655654220Ratregion
5034137RH14150416275711394357114105Ratregion
5026138RH13105822075036817250368392Ratregion
5026154RH13112218274348123443482285Ratregion
5026230RH131414075875832358758425Ratregion
5026234RH13142921175253242052532631Ratregion
5026256RH13151318075192939551929575Ratregion
5029039RH14328120972917157129171780Ratregion
5029043RH14329921575100725751007472Ratregion
5031734AU04732825174075109240751340Ratregion
5031824AU04703216673123641431236581Ratregion
5026460RH13229815775068569550685852Ratregion
5026496RH13243520175691730756918843Ratregion
5029211RH14393910873042195930422067Ratregion
5034554BE11945316574994115849941323Ratregion
5029331RH14439112376381427263814395Ratregion
5032030AU04630527173136546431365735Ratregion
5032074AU02888617773539407635394253Ratregion
5032189RH12636420376300245163002654Ratregion
5034708BI28201220675328450353284709Ratregion
5034744BI27661817575642136956421544Ratregion
5026854RH13378519172852518928525380Ratregion
5029488AI50193721575941814159418356Ratregion
5027052RH13454921472853440228534616Ratregion
5029687BF41951525075860198058602230Ratregion
5027101WI-1423712972939006929390198Ratregion
5029807BF38743116672759671827596884Ratregion
5029857AW53062219975734813357348332Ratregion
5029859AW53070017674408976744089943Ratregion
5032579WI-1678512674359283343592959Ratregion
5032785RH13529220376358539963585602Ratregion
5035296BM38471415573213548532135640Ratregion
5035320AW52979215972841251228412671Ratregion
5032919RH13696616075376580353765963Ratregion
5032965RH13713118576336777863367963Ratregion
5027621AI19500512375468135754681480Ratregion
5030269BF39633116075559469455594854Ratregion
5030371BE11200215673526577035265926Ratregion
5030413BE10623419575671509856715293Ratregion
5030513BE10693316075527404555274205Ratregion
5033219RH13802223872741642927416667Ratregion
5033305RH13834512472812649728126621Ratregion
502796144.MMHAP10FRG11.seq18573979455139794736Ratregion
5027987D3779216074381573143815891Ratregion
5030707BI30184419775852908558529282Ratregion
5033413RH13874412074695404646954639Ratregion
5033489RH13901915476104380961043963Ratregion
5025540RH12871919375342312353423316Ratregion
5028121D10Mit9614373439808734398230Ratregion
5028121D10Mit9614373439778534398230Ratregion
5033587RH13937221976282906862829287Ratregion
5028253D4Mit3536875900140359001471Ratregion
5028513AU04228512975692298256923111Ratregion
5028515AU04348811276315660463156716Ratregion
5031189AA99806021875090322550903443Ratregion
5052109RH9484519075390486853905058Ratregion
5054927RH14350510176282901962829120Ratregion
5054991RH14354211575297093352971048Ratregion
5053465RH14266411975753369657533816Ratregion
5055891RH14406210775035259250352699Ratregion
5056243RH14426611475211407352114195Ratregion
5056293RH14429525573392106333921318Ratregion
5051497AI45190711476349875563498869Ratregion
5051739RH9463017673489527734895453Ratregion
5056929RH14466220673383572133835927Ratregion
5056993Myf571674280401142804727Ratregion
5052107RH9484418275390485853905040Ratregion
5054391RH14319714673372957133729717Ratregion
5057352AI54885518876362466363624851Ratregion
5057352AI54885518876361303763613225Ratregion
5057410AA99651818975271130752711496Ratregion
5057464AA85873915073497684434976994Ratregion
5055425RH14379415872776973827769896Ratregion
5059446AW53085119675555148955551685Ratregion
5054781RH14342114875269856052699325Ratregion
5055067RH14358712472774797227748096Ratregion
5055835RH14403016475213826152138425Ratregion
5056085RH14417411375650236356502476Ratregion
5058710BE10235916172999224229992403Ratregion
5058790BE10243920674566598545666191Ratregion
5058080BF38658218775342577053425957Ratregion
5058166BF38673015072959184729591997Ratregion
5058170BF38673818976271482662715015Ratregion
5056803RH14458915972735992127360080Ratregion
5058860BE10251115072953291029533060Ratregion
5055257RH14369711872723470927234827Ratregion
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5052939RH14236116773018409530184262Ratregion
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5039668RH12783821975289405052894271Ratregion
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5040160RH12812420775108721851087425Ratregion
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5039328RH12764318775290704252907229Ratregion
5039328RH12764318775289402552894214Ratregion
5039328RH12764318775289402552894214Ratregion
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5089043AU04892114674504495645045097Ratregion
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5081557BE11737421372939008929390302Ratregion
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5085367BQ21008916575650133556501500Ratregion
5090385AU04971927175462774454629303Ratregion
5088675AU04871021174186102741861238Ratregion
5081240RH14204621373437462534374838Ratregion
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5085495BQ19905018172979404529794226Ratregion
5090099AU04954921575757526157575476Ratregion
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5085790BF38811118772865648828656675Ratregion
5080940RH14187120075290621752906417Ratregion
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5083109BI28174821375865120358651416Ratregion
5083241BI27573117975468136954681548Ratregion
5083343AI70362822772776874727768974Ratregion
5085246AI59847022075108784051088060Ratregion
5085687AI23151316972861395128614120Ratregion
5085892BE09964618075090130950901489Ratregion
5085918BM38443917873782042537820603Ratregion
5084036AI01167717775340686353407040Ratregion
5134356D7Uwm2425675168502951685285Ratregion
5507563WI-1439515173409467234095830Ratregion
5504196UniSTS:25969387876315882863159707Ratregion
5503664UniSTS:46547840376315709963157502Ratregion
5503788UniSTS:471082136475268698852688352Ratregion
5504466PMC212738P37176288692062887122Ratregion
5504272D19S653E8374505228745052370Ratregion
5504318D14S655E074695508146956484Ratregion
5504813ha2151129475730565957306635Ratregion
5505239Shmt27076336127963361349Ratregion
5505294Lgr5131375108968251090995Ratregion
5505514DXS1232076070644760707416Ratregion
5506805G4577730373052785130528154Ratregion
5507027fk81g07.x197474973636649736538Ratregion
5507091UniSTS:224451076349766363497833Ratregion
5500055UniSTS:23647313475571921355719347Ratregion
5500270D12S1376E9174513945545139546Ratregion
5502557RH12532322473018301930183813Ratregion
5503019B4galnt121776299009162990920Ratregion
5500575RH13603120775267111652671323Ratregion
5500837D3S416114174636606946366850Ratregion
5503700MARC_36444-36445:1067884409:185875269638652697244Ratregion
5501147PMC150726P430476312076363121067Ratregion
5501400Myf6074281358342814392Ratregion
5501436Snrpn35875871475758715094Ratregion
5501472D7S22468475331391853314002Ratregion
5501962MARC_21230-21231:1032890530:1074281355142813957Ratregion
5501700MGF073495763834958490Ratregion
5502895Kif5a170076305662163058321Ratregion
Position Markers

Flank 1: (D7Mit28)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2726,737,401 - 26,737,633 (+)MAPPER
Rnor_6.0733,044,449 - 33,044,680NCBI
Rnor_5.0733,124,095 - 33,124,326UniSTS
RGSC_v3.4729,204,227 - 29,204,458UniSTS
RGSC_v3.4729,204,226 - 29,204,458RGD
RGSC_v3.1729,224,498 - 29,224,729RGD
Celera723,855,014 - 23,855,245UniSTS
RH 3.4 Map7170.6UniSTS
RH 3.4 Map7170.6RGD
RH 2.0 Map7160.3RGD
FHH x ACI Map77.4699RGD
Peak: (D7Mit28)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2726,737,401 - 26,737,633 (+)MAPPER
Rnor_6.0733,044,449 - 33,044,680NCBI
Rnor_5.0733,124,095 - 33,124,326UniSTS
RGSC_v3.4729,204,227 - 29,204,458UniSTS
RGSC_v3.4729,204,226 - 29,204,458RGD
RGSC_v3.1729,224,498 - 29,224,729RGD
Celera723,855,014 - 23,855,245UniSTS
RH 3.4 Map7170.6UniSTS
RH 3.4 Map7170.6RGD
RH 2.0 Map7160.3RGD
FHH x ACI Map77.4699RGD
Flank 2: (D7Rat45)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2763,902,608 - 63,902,784 (+)MAPPER
Rnor_6.0771,351,952 - 71,352,127NCBI
Rnor_5.0771,522,185 - 71,522,360UniSTS
RGSC_v3.4768,056,925 - 68,057,251RGD
RGSC_v3.4768,056,997 - 68,057,172UniSTS
RGSC_v3.1768,077,655 - 68,077,981RGD
Celera761,034,295 - 61,034,470UniSTS
FHH x ACI Map733.46RGD
FHH x ACI Map733.46UniSTS
Cytogenetic Map7q22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
634319Bw119Body weight QTL 1195.44abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)72782894927829089Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)72940968353612950Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
2303629Vencon3Ventilatory control QTL 37.25respiration trait (VT:0001943)respiration rate (CMO:0000289)74110969256793354Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
61435Cia4Collagen induced arthritis QTL 45.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)75811322462004598Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Mcs6

RGD Curation Notes
Note Type Note Reference
qtl_gene contains 111 annotated genes and 2 microRNA (Mir135 and Mir331) 5133689
qtl_general development of congenic strains delimited this to a 33 Mb region on rat chr 7 between D7Rat171 and D7Uwm24 5133689
qtl_general susceptibility phenotype of the WF strain is reduced by 70% and 50% by Mcs2 and Mcs6 regions respectively 5133689
qtl_general alligns to 34.2 Mb region on human chr 12 which is inverted as compared to rat 5133689