Poc1b (POC1 centriolar protein B) - Rat Genome Database

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Gene: Poc1b (POC1 centriolar protein B) Rattus norvegicus
Analyze
Symbol: Poc1b
Name: POC1 centriolar protein B
RGD ID: 2323942
Description: Predicted to be involved in cell population proliferation; organelle assembly; and retina homeostasis. Predicted to act upstream of or within several processes, including homeostasis of number of cells; single fertilization; and spermatid development. Predicted to be located in centrosome and spindle pole. Predicted to be active in centriole and ciliary basal body. Human ortholog(s) of this gene implicated in cone-rod dystrophy 20. Orthologous to human POC1B (POC1 centriolar protein B); INTERACTS WITH atrazine; bisphenol A; cobalt dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100362836; POC1 centriolar protein homolog B; POC1 centriolar protein homolog B (Chlamydomonas); rCG49027-like; WD repeat-containing protein 51B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8735,810,761 - 35,912,571 (+)NCBIGRCr8
mRatBN7.2733,924,112 - 34,025,908 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl733,924,189 - 34,025,903 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx735,913,381 - 36,013,202 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0738,095,146 - 38,194,965 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0737,828,228 - 37,928,379 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0741,304,119 - 41,404,360 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl741,304,440 - 41,404,370 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0741,340,879 - 41,439,784 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4736,683,546 - 36,811,968 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera730,939,983 - 31,040,928 (+)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centriole  (IBA,IEA,ISO,ISS)
centrosome  (IEA,ISO)
ciliary basal body  (IBA,IEA,ISO)
cytoplasm  (IEA)
spindle pole  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20008567   PMID:21399614   PMID:23015594   PMID:25044745  


Genomics

Comparative Map Data
Poc1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8735,810,761 - 35,912,571 (+)NCBIGRCr8
mRatBN7.2733,924,112 - 34,025,908 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl733,924,189 - 34,025,903 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx735,913,381 - 36,013,202 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0738,095,146 - 38,194,965 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0737,828,228 - 37,928,379 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0741,304,119 - 41,404,360 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl741,304,440 - 41,404,370 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0741,340,879 - 41,439,784 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4736,683,546 - 36,811,968 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera730,939,983 - 31,040,928 (+)NCBICelera
Cytogenetic Map7q13NCBI
POC1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381289,401,467 - 89,526,047 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1289,419,718 - 89,526,047 (-)EnsemblGRCh38hg38GRCh38
GRCh371289,795,244 - 89,919,824 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361288,337,632 - 88,443,908 (-)NCBINCBI36Build 36hg18NCBI36
Build 341288,315,972 - 88,422,245NCBI
Celera1289,485,188 - 89,591,448 (-)NCBICelera
Cytogenetic Map12q21.33NCBI
HuRef1286,879,390 - 86,985,916 (-)NCBIHuRef
CHM1_11289,778,437 - 89,885,064 (-)NCBICHM1_1
T2T-CHM13v2.01289,383,412 - 89,507,903 (-)NCBIT2T-CHM13v2.0
Poc1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391098,942,918 - 99,033,936 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1098,942,898 - 99,033,936 (+)EnsemblGRCm39 Ensembl
GRCm381099,107,082 - 99,198,074 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1099,107,036 - 99,198,074 (+)EnsemblGRCm38mm10GRCm38
MGSCv371098,569,805 - 98,660,622 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361098,536,859 - 98,627,676 (+)NCBIMGSCv36mm8
Celera10101,079,100 - 101,169,966 (+)NCBICelera
Cytogenetic Map10C3- D1NCBI
cM Map1051.06NCBI
Poc1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540526,718,055 - 26,786,385 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540526,720,279 - 26,786,385 (-)NCBIChiLan1.0ChiLan1.0
POC1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21097,427,820 - 97,552,835 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11297,442,718 - 97,555,068 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01286,946,987 - 87,053,789 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11290,267,207 - 90,373,735 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1290,267,217 - 90,373,682 (-)Ensemblpanpan1.1panPan2
POC1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11530,388,351 - 30,481,294 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1530,382,033 - 30,483,135 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1530,842,949 - 30,937,805 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01531,033,070 - 31,127,957 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1531,032,627 - 31,127,981 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11530,337,042 - 30,431,900 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01530,398,924 - 30,494,019 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01530,693,146 - 30,788,005 (-)NCBIUU_Cfam_GSD_1.0
Poc1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494529,778,216 - 29,860,064 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365076,376,350 - 6,456,932 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365076,375,009 - 6,457,034 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POC1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl593,132,018 - 93,222,522 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1593,132,018 - 93,222,523 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2597,794,739 - 97,890,444 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POC1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11184,816,486 - 84,932,237 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1184,814,509 - 84,917,953 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037160,283,419 - 160,385,961 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Poc1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475017,203,391 - 17,300,129 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475017,202,655 - 17,296,525 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Poc1b
465 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:209
Count of miRNA genes:82
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000031905, ENSRNOT00000058937, ENSRNOT00000075253
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)72940968353612950Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat

Markers in Region
RH135128  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2734,024,744 - 34,024,941 (+)MAPPERmRatBN7.2
Rnor_6.0741,403,197 - 41,403,393NCBIRnor6.0
Rnor_5.0741,439,498 - 41,439,694UniSTSRnor5.0
RGSC_v3.4736,811,857 - 36,812,053UniSTSRGSC3.4
Celera731,039,765 - 31,039,961UniSTS
RH 3.4 Map7279.4UniSTS
RH139921  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2733,928,760 - 33,928,964 (+)MAPPERmRatBN7.2
Rnor_6.0741,309,339 - 41,309,542NCBIRnor6.0
Rnor_5.0741,345,800 - 41,346,003UniSTSRnor5.0
RGSC_v3.4736,688,048 - 36,688,251UniSTSRGSC3.4
Celera730,944,844 - 30,945,047UniSTS
RH 3.4 Map7279.6UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001398583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002726882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000031905   ⟹   ENSRNOP00000032069
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl733,924,189 - 34,025,903 (+)Ensembl
Rnor_6.0 Ensembl741,304,440 - 41,404,370 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097058   ⟹   ENSRNOP00000093061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl733,924,189 - 34,025,903 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107890   ⟹   ENSRNOP00000082770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl733,924,405 - 34,020,764 (+)Ensembl
RefSeq Acc Id: NM_001398583   ⟹   NP_001385512
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8735,810,820 - 35,912,571 (+)NCBI
mRatBN7.2733,924,145 - 34,025,908 (+)NCBI
RefSeq Acc Id: XM_008765341   ⟹   XP_008763563
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8735,811,000 - 35,911,363 (+)NCBI
mRatBN7.2733,924,320 - 34,025,908 (+)NCBI
Rnor_6.0741,304,513 - 41,404,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039080110   ⟹   XP_038936038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8735,810,761 - 35,911,363 (+)NCBI
mRatBN7.2733,924,112 - 34,025,908 (+)NCBI
RefSeq Acc Id: XM_063262849   ⟹   XP_063118919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8735,810,761 - 35,911,363 (+)NCBI
RefSeq Acc Id: XM_063262850   ⟹   XP_063118920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8735,810,761 - 35,911,363 (+)NCBI
RefSeq Acc Id: XP_008763563   ⟸   XM_008765341
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZUQ9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000032069   ⟸   ENSRNOT00000031905
RefSeq Acc Id: XP_038936038   ⟸   XM_039080110
- Peptide Label: isoform X3
- UniProtKB: D3ZW91 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000082770   ⟸   ENSRNOT00000107890
Ensembl Acc Id: ENSRNOP00000093061   ⟸   ENSRNOT00000097058
RefSeq Acc Id: NP_001385512   ⟸   NM_001398583
- UniProtKB: D3ZW91 (UniProtKB/Swiss-Prot),   A0A0A0MY03 (UniProtKB/TrEMBL),   A6IG79 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118920   ⟸   XM_063262850
- Peptide Label: isoform X4
- UniProtKB: D3ZW91 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063118919   ⟸   XM_063262849
- Peptide Label: isoform X1
- UniProtKB: D3ZW91 (UniProtKB/Swiss-Prot),   A0A8I6GK37 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZW91-F1-model_v2 AlphaFold D3ZW91 1-477 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695192
Promoter ID:EPDNEW_R5698
Type:initiation region
Name:Poc1b_1
Description:POC1 centriolar protein B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0741,304,388 - 41,304,448EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2323942 AgrOrtholog
BioCyc Gene G2FUF-34273 BioCyc
Ensembl Genes ENSRNOG00000024450 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031905.8 UniProtKB/TrEMBL
  ENSRNOT00000097058.1 UniProtKB/TrEMBL
  ENSRNOT00000107890.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WDR55_POC1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 100362836 ENTREZGENE
PANTHER POC1 CENTRIOLAR PROTEIN HOMOLOG B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 55 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Poc1b PhenoGen
PRINTS GPROTEINBRPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000024450 RatGTEx
SMART WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A0MY03 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZUQ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GK37 ENTREZGENE, UniProtKB/TrEMBL
  A6IG79 ENTREZGENE, UniProtKB/TrEMBL
  D3ZW91 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-22 Poc1b  POC1 centriolar protein B  Poc1b  POC1 centriolar protein homolog B (Chlamydomonas)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-08-30 Poc1b  POC1 centriolar protein homolog B (Chlamydomonas)  LOC100362836  rCG49027-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100362836  rCG49027-like      Symbol and Name status set to provisional 70820 PROVISIONAL