Gene: Lrriq1 (leucine-rich repeats and IQ motif containing 1) Rattus norvegicus |
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Analyze |
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Symbol: |
Lrriq1 |
Name: |
leucine-rich repeats and IQ motif containing 1 |
RGD ID: |
1564903 |
Description: |
Orthologous to human LRRIQ1 (leucine rich repeats and IQ motif containing 1); INTERACTS WITH bisphenol A; Cuprizon; endosulfan. |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
leucine-rich repeat and IQ domain-containing protein 1; LOC299759; RGD1564903; similar to leucine-rich repeats and IQ motif containing 1 |
RGD Orthologs |
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Alliance Orthologs |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 7 | 40,211,036 - 40,296,374 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 7 | 38,317,259 - 38,409,885 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 7 | 38,192,759 - 38,409,901 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 | 7 | 45,084,697 - 45,187,614 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 7 | 45,056,399 - 45,185,690 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 7 | 45,175,173 - 45,207,553 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 7 | 41,318,759 - 41,350,194 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 7 | 35,143,752 - 35,358,905 (-) | NCBI | | Celera | | | Cytogenetic Map | 7 | q21 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
Lrriq1 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 7 | 40,211,036 - 40,296,374 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 7 | 38,317,259 - 38,409,885 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 7 | 38,192,759 - 38,409,901 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 | 7 | 45,084,697 - 45,187,614 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 7 | 45,056,399 - 45,185,690 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 7 | 45,175,173 - 45,207,553 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 7 | 41,318,759 - 41,350,194 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 7 | 35,143,752 - 35,358,905 (-) | NCBI | | Celera | | | Cytogenetic Map | 7 | q21 | NCBI | | | | |
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LRRIQ1 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 12 | 85,036,351 - 85,272,805 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 12 | 85,036,314 - 85,264,457 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 12 | 85,430,129 - 85,638,883 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 12 | 83,954,230 - 84,163,014 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 12 | 83,932,566 - 84,021,104 | NCBI | | | | | Celera | 12 | 85,093,691 - 85,302,430 (+) | NCBI | | Celera | | | Cytogenetic Map | 12 | q21.31 | NCBI | | | | | HuRef | 12 | 82,487,346 - 82,696,101 (+) | NCBI | | HuRef | | | CHM1_1 | 12 | 85,395,055 - 85,603,840 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 12 | 85,015,741 - 85,253,151 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Lrriq1 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 10 | 102,880,238 - 103,072,236 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 10 | 102,881,892 - 103,072,183 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 10 | 103,044,377 - 103,236,375 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 10 | 103,046,031 - 103,236,322 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 10 | 102,525,832 - 102,698,956 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 10 | 102,574,485 - 102,663,841 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 10 | 105,008,554 - 105,182,213 (-) | NCBI | | Celera | | | Cytogenetic Map | 10 | D1 | NCBI | | | | | cM Map | 10 | 53.65 | NCBI | | | | |
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Lrriq1 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955405 | 23,004,726 - 23,215,249 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955405 | 23,004,726 - 23,245,774 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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LRRIQ1 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 10 | 93,085,333 - 93,315,243 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 12 | 93,081,731 - 93,311,641 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 12 | 82,555,266 - 82,784,679 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 12 | 85,658,124 - 85,867,199 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 12 | 85,657,812 - 85,901,943 (+) | Ensembl | panpan1.1 | | panPan2 | |
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LRRIQ1 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 15 | 26,616,783 - 26,829,357 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 15 | 26,616,853 - 26,824,249 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 15 | 27,056,389 - 27,271,168 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 15 | 27,226,697 - 27,442,047 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 15 | 27,226,743 - 27,435,389 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 15 | 26,577,826 - 26,792,539 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 15 | 26,618,110 - 26,833,093 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 15 | 26,867,009 - 27,081,833 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Lrriq1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024404945 | 33,477,168 - 33,657,990 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936507 | 2,582,197 - 2,740,155 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936507 | 2,577,493 - 2,740,266 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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LRRIQ1 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 5 | 96,801,327 - 96,993,094 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 5 | 96,801,180 - 97,093,718 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 5 | 101,859,890 - 101,956,006 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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LRRIQ1 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 11 | 80,450,758 - 80,679,685 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 11 | 80,452,888 - 80,660,167 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666037 | 164,655,068 - 164,883,643 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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miRNA Target Status
Predicted Target Of
Count of predictions: | 80 | Count of miRNA genes: | 59 | Interacting mature miRNAs: | 60 | Transcripts: | ENSRNOT00000031320, ENSRNOT00000071306 | Prediction methods: | Microtar, Miranda, Rnahybrid | Result types: | miRGate_prediction | |