LRRIQ1 (leucine rich repeats and IQ motif containing 1)

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Gene: LRRIQ1 (leucine rich repeats and IQ motif containing 1) Pan paniscus

Analyze

Symbol:

LRRIQ1

Name:

leucine rich repeats and IQ motif containing 1

RGD ID:

12030870

Description:

INVOLVED IN regulation of signal transduction (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

leucine-rich repeat and IQ domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	93,085,333 - 93,315,243 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	93,081,731 - 93,311,641 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	82,555,266 - 82,784,679 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	85,658,124 - 85,867,199 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	85,657,812 - 85,901,943 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of signal transduction (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LRRIQ1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	93,085,333 - 93,315,243 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	93,081,731 - 93,311,641 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	82,555,266 - 82,784,679 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	85,658,124 - 85,867,199 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	85,657,812 - 85,901,943 (+)	Ensembl	panpan1.1		panPan2

LRRIQ1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	85,036,351 - 85,272,805 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	85,036,314 - 85,264,457 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	85,430,129 - 85,638,883 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	83,954,230 - 84,163,014 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	83,932,566 - 84,021,104	NCBI
Celera	12	85,093,691 - 85,302,430 (+)	NCBI		Celera
Cytogenetic Map	12	q21.31	NCBI
HuRef	12	82,487,346 - 82,696,101 (+)	NCBI		HuRef
CHM1_1	12	85,395,055 - 85,603,840 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	85,015,741 - 85,253,151 (+)	NCBI		T2T-CHM13v2.0

Lrriq1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	102,880,238 - 103,072,236 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	102,881,892 - 103,072,183 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	103,044,377 - 103,236,375 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	103,046,031 - 103,236,322 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	102,525,832 - 102,698,956 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	102,574,485 - 102,663,841 (-)	NCBI		MGSCv36	mm8
Celera	10	105,008,554 - 105,182,213 (-)	NCBI		Celera
Cytogenetic Map	10	D1	NCBI
cM Map	10	53.65	NCBI

Lrriq1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	40,211,036 - 40,296,374 (-)	NCBI		GRCr8
mRatBN7.2	7	38,317,259 - 38,409,885 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	38,192,759 - 38,409,901 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	7	45,084,697 - 45,187,614 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	45,056,399 - 45,185,690 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	45,175,173 - 45,207,553 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	41,318,759 - 41,350,194 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	35,143,752 - 35,358,905 (-)	NCBI		Celera
Cytogenetic Map	7	q21	NCBI

Lrriq1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	23,004,726 - 23,215,249 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	23,004,726 - 23,245,774 (+)	NCBI	ChiLan1.0	ChiLan1.0

LRRIQ1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	26,616,783 - 26,829,357 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	26,616,853 - 26,824,249 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	27,056,389 - 27,271,168 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	27,226,697 - 27,442,047 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	27,226,743 - 27,435,389 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	26,577,826 - 26,792,539 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	26,618,110 - 26,833,093 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	26,867,009 - 27,081,833 (+)	NCBI		UU_Cfam_GSD_1.0

Lrriq1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	33,477,168 - 33,657,990 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936507	2,582,197 - 2,740,155 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936507	2,577,493 - 2,740,266 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRIQ1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	96,801,327 - 96,993,094 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	96,801,180 - 97,093,718 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	101,859,890 - 101,956,006 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LRRIQ1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	80,450,758 - 80,679,685 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	80,452,888 - 80,660,167 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	164,655,068 - 164,883,643 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_034936300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034936301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034936302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055095956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055095957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055095958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055095959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055095960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000035424 ⟹ ENSPPAP00000012758

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	12	85,657,812 - 85,901,943 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000035426 ⟹ ENSPPAP00000012760

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	12	85,657,812 - 85,901,943 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000035445 ⟹ ENSPPAP00000012779

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	12	85,659,991 - 85,867,199 (+)	Ensembl

RefSeq Acc Id:

XM_034936300 ⟹ XP_034792191

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	93,085,342 - 93,315,243 (+)	NCBI
NHGRI_mPanPan1	12	93,081,740 - 93,311,641 (+)	NCBI
Mhudiblu_PPA_v0	12	82,555,266 - 82,784,679 (+)	NCBI

RefSeq Acc Id:

XM_055095956 ⟹ XP_054951931

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	93,085,333 - 93,315,243 (+)	NCBI
NHGRI_mPanPan1	12	93,081,731 - 93,311,641 (+)	NCBI

RefSeq Acc Id:

XM_055095957 ⟹ XP_054951932

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	93,085,341 - 93,315,243 (+)	NCBI
NHGRI_mPanPan1	12	93,081,739 - 93,311,641 (+)	NCBI

RefSeq Acc Id:

XM_055095958 ⟹ XP_054951933

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	93,085,342 - 93,315,243 (+)	NCBI
NHGRI_mPanPan1	12	93,081,740 - 93,311,641 (+)	NCBI

RefSeq Acc Id:

XM_055095959 ⟹ XP_054951934

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	93,085,342 - 93,315,243 (+)	NCBI
NHGRI_mPanPan1	12	93,081,756 - 93,311,641 (+)	NCBI

RefSeq Acc Id:

XM_055095960 ⟹ XP_054951935

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	93,085,342 - 93,315,243 (+)	NCBI
NHGRI_mPanPan1	12	93,081,740 - 93,311,641 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_034792191	(Get FASTA)	NCBI Sequence Viewer
	XP_054951931	(Get FASTA)	NCBI Sequence Viewer
	XP_054951932	(Get FASTA)	NCBI Sequence Viewer
	XP_054951933	(Get FASTA)	NCBI Sequence Viewer
	XP_054951934	(Get FASTA)	NCBI Sequence Viewer
	XP_054951935	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000012758.1
	ENSPPAP00000012760.1
	ENSPPAP00000012779.1

RefSeq Acc Id:	XP_034792191 ⟸ XM_034936300
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9A648 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSPPAP00000012779 ⟸ ENSPPAT00000035445

Ensembl Acc Id:

ENSPPAP00000012760 ⟸ ENSPPAT00000035426

Ensembl Acc Id:

ENSPPAP00000012758 ⟸ ENSPPAT00000035424

RefSeq Acc Id:	XP_054951931 ⟸ XM_055095956
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9A640 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054951932 ⟸ XM_055095957
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9A640 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054951935 ⟸ XM_055095960
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9A7A9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054951933 ⟸ XM_055095958
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9A640 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054951934 ⟸ XM_055095959
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9A7A9 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000029539	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000035424.1	UniProtKB/TrEMBL
	ENSPPAT00000035426.1	UniProtKB/TrEMBL
	ENSPPAT00000035445.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.190	UniProtKB/TrEMBL
	3.80.10.10	UniProtKB/TrEMBL
InterPro	IQ_motif_EF-hand-BS	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	SDS22/Internalin_LRR	UniProtKB/TrEMBL
NCBI Gene	LRRIQ1	ENTREZGENE
PANTHER	LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED	UniProtKB/TrEMBL
Pfam	LRR_8	UniProtKB/TrEMBL
	PF00612	UniProtKB/TrEMBL
PROSITE	LRR	UniProtKB/TrEMBL
	PS50096	UniProtKB/TrEMBL
SMART	LRR_TYP	UniProtKB/TrEMBL
	SM00015	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
UniProt	A0A2R9A640	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9A648	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9A7A9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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