Mdm1 (Mdm1 nuclear protein) - Rat Genome Database

Name: Mdm1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Mdm1 (Mdm1 nuclear protein) Rattus norvegicus

Analyze

Symbol:

Mdm1

Name:

Mdm1 nuclear protein

RGD ID:

1561092

Description:

Predicted to enable microtubule binding activity. Predicted to be involved in negative regulation of centriole replication and retina development in camera-type eye. Predicted to act upstream of or within photoreceptor cell maintenance. Predicted to be located in several cellular components, including cytosol; microtubule organizing center; and non-motile cilium. Orthologous to human MDM1 (Mdm1 nuclear protein); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC314859; Mdm1 nuclear protein homolog; Mdm1 nuclear protein homolog (mouse); nuclear protein MDM1; similar to transformed mouse 3T3 cell double minute 1; transformed mouse 3T3 cell double minute 1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MDM1 (Mdm1 nuclear protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Mdm1 (transformed mouse 3T3 cell double minute 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mdm1 (Mdm1 nuclear protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MDM1 (Mdm1 nuclear protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MDM1 (Mdm1 nuclear protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mdm1 (Mdm1 nuclear protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MDM1 (Mdm1 nuclear protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MDM1 (Mdm1 nuclear protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mdm1 (Mdm1 nuclear protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MDM1 (Mdm1 nuclear protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mdm1 (transformed mouse 3T3 cell double minute 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mdm1 (Mdm1 nuclear protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	53,729,603 - 53,766,034 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	53,729,610 - 53,766,034 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	55,646,237 - 55,672,740 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	57,849,342 - 57,875,845 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	57,627,185 - 57,653,689 (+)	NCBI	Rnor_WKY
Rnor_6.0	7	61,165,652 - 61,200,865 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	61,165,640 - 61,200,879 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	61,161,294 - 61,197,124 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	57,455,598 - 57,482,092 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	50,507,908 - 50,534,254 (+)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

age related macular degeneration (ISS)

Kuhnt-Junius degeneration (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP,ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

azathioprine (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

calcitriol (ISO)

chlordecone (ISO)

chloroprene (ISO)

choline (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

furan (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

L-methionine (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

pentanal (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

progesterone (ISO)

quercetin (ISO)

resveratrol (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sunitinib (ISO)

tamibarotene (ISO)

testosterone (ISO)

topotecan (EXP)

trichostatin A (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

negative regulation of centriole replication (IEA,ISO,ISS)

photoreceptor cell maintenance (ISO)

retina development in camera-type eye (IBA,ISO)

Cellular Component

cellular_component (ND)

centriolar satellite (ISO)

centriole (IEA,ISO,ISS)

centrosome (ISO,ISS)

cytoplasm (IEA)

cytosol (ISO)

microtubule (IEA)

non-motile cilium (ISO)

nucleus (IEA,ISO,ISS)

Molecular Function

microtubule binding (IEA,ISO,ISS)

molecular_function (ND)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Age-related retinal degeneration (arrd2) in a novel mouse model due to a nonsense mutation in the Mdm1 gene.	Chang B, etal., Hum Mol Genet. 2008 Dec 15;17(24):3929-41. doi: 10.1093/hmg/ddn295. Epub 2008 Sep 18.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:21052544	PMID:23300604	PMID:26337392

Genomics

Comparative Map Data

Mdm1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	53,729,603 - 53,766,034 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	53,729,610 - 53,766,034 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	55,646,237 - 55,672,740 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	57,849,342 - 57,875,845 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	57,627,185 - 57,653,689 (+)	NCBI	Rnor_WKY
Rnor_6.0	7	61,165,652 - 61,200,865 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	61,165,640 - 61,200,879 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	61,161,294 - 61,197,124 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	57,455,598 - 57,482,092 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	50,507,908 - 50,534,254 (+)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

MDM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	68,294,566 - 68,332,362 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	12	68,272,443 - 68,332,381 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	68,688,346 - 68,726,142 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	66,974,613 - 67,012,379 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	67,005,167 - 67,012,350	NCBI
Celera	12	68,352,374 - 68,390,189 (-)	NCBI		Celera
Cytogenetic Map	12	q15	NCBI
HuRef	12	65,739,499 - 65,777,306 (-)	NCBI		HuRef
CHM1_1	12	68,656,328 - 68,694,144 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	68,274,117 - 68,311,913 (-)	NCBI		T2T-CHM13v2.0

Mdm1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	117,977,446 - 118,004,904 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	117,977,716 - 118,004,902 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	118,141,540 - 118,168,999 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	118,141,811 - 118,168,997 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	117,578,843 - 117,606,055 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	117,544,825 - 117,571,990 (+)	NCBI		MGSCv36	mm8
Celera	10	120,092,487 - 120,120,063 (+)	NCBI		Celera
Cytogenetic Map	10	D2	NCBI
cM Map	10	66.65	NCBI

Mdm1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	14,780,437 - 14,822,954 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	14,789,842 - 14,823,117 (-)	NCBI	ChiLan1.0	ChiLan1.0

MDM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	12	68,588,541 - 68,626,359 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	68,588,541 - 68,626,326 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	12	65,803,548 - 65,841,404 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

MDM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	10,523,656 - 10,552,824 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	10,524,328 - 10,696,181 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	10,456,983 - 10,486,143 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	10,647,765 - 10,676,917 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	10,647,770 - 10,676,899 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	10,515,759 - 10,544,917 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	10,762,218 - 10,791,382 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	10,884,769 - 10,913,942 (-)	NCBI		UU_Cfam_GSD_1.0

Mdm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	47,815,517 - 47,848,237 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936545	6,261,875 - 6,294,621 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936545	6,261,887 - 6,294,487 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MDM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	32,640,945 - 32,673,638 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	32,640,939 - 32,673,624 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	35,453,845 - 35,486,488 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MDM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	63,926,950 - 64,082,149 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	63,927,640 - 63,965,097 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	181,740,938 - 181,779,219 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mdm1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624802	2,648 - 9,999 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Mdm1
122 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	159
Count of miRNA genes:	110
Interacting mature miRNAs:	140
Transcripts:	ENSRNOT00000048765
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	9462246	58265113	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	9462246	98011544	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	9866467	60460686	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	15573889	60573889	Rat
2317059	Aia15	Adjuvant induced arthritis QTL 15	2.46		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	17004598	62004598	Rat
10755451	Coatc11	Coat color QTL 11		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	17944357	62944357	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	19654317	84928080	Rat
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	21921195	66921195	Rat
1641885	Alcrsp9	Alcohol response QTL 9			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	7	24099606	69099606	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	24751841	69751841	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	26737401	63902784	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	29409683	74409683	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	29409683	84928080	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	31112832	76112832	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	34293282	79293282	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	34293282	79293282	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	37960569	82960569	Rat
2303629	Vencon3	Ventilatory control QTL 3	7.25		respiration trait (VT:0001943)	respiration rate (CMO:0000289)	7	41109692	56793354	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	41333674	119109060	Rat
634326	Hc3	Hypercalciuria QTL 3	2.1		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	7	42787314	87787314	Rat
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	43228750	88228750	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	43747012	108555253	Rat
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	43747099	102228765	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	44421311	118198041	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	44867533	89867533	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	46590070	91590070	Rat
10059605	Kidm47	Kidney mass QTL 47	2.91	0.05	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	47251783	65728867	Rat
2293696	Bmd32	Bone mineral density QTL 32	5.1	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	7	47651439	92651439	Rat
2293707	Bss32	Bone structure and strength QTL 32	7.64	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	47651439	92651439	Rat
2300178	Bmd54	Bone mineral density QTL 54	5.3	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	7	47651439	92651439	Rat
2293644	Bmd29	Bone mineral density QTL 29	5.4	0.0001	femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	7	47651439	92651439	Rat
2293667	Bss42	Bone structure and strength QTL 42	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	7	47651439	92651439	Rat
2293678	Bss24	Bone structure and strength QTL 24	6.71	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	7	47651439	92651439	Rat
2293685	Bmd21	Bone mineral density QTL 21	4.2	0.0003	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	7	47651439	92651439	Rat
1300151	Bp181	Blood pressure QTL 181	3.36		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	7	53612714	103945643	Rat

Markers in Region

RH136966

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	53,765,803 - 53,765,963 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	61,200,635 - 61,200,794	NCBI	Rnor6.0
Rnor_5.0	7	61,196,894 - 61,197,053	UniSTS	Rnor5.0
RGSC_v3.4	7	57,481,862 - 57,482,021	UniSTS	RGSC3.4
Celera	7	50,534,024 - 50,534,183	UniSTS
RH 3.4 Map	7	482.2	UniSTS
Cytogenetic Map	7	q22	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	1	24	27	18	15	18			63	21	41	11
Low	2	19	30	23	4	23	8	11	11	14			8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001017459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC087101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB544747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV126474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000048765 ⟹ ENSRNOP00000041359

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	53,739,532 - 53,766,032 (+)	Ensembl
Rnor_6.0 Ensembl	7	61,174,369 - 61,200,863 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087955 ⟹ ENSRNOP00000075623

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	53,729,610 - 53,766,034 (+)	Ensembl
Rnor_6.0 Ensembl	7	61,165,640 - 61,200,879 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000091885 ⟹ ENSRNOP00000071496

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	53,739,532 - 53,766,032 (+)	Ensembl
Rnor_6.0 Ensembl	7	61,174,401 - 61,200,863 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000108196 ⟹ ENSRNOP00000091573

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	53,739,532 - 53,765,210 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000114732 ⟹ ENSRNOP00000077918

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	53,739,532 - 53,745,080 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000118906 ⟹ ENSRNOP00000081317

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	53,739,265 - 53,766,034 (+)	Ensembl

RefSeq Acc Id:

NM_001017459 ⟹ NP_001017459

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	53,739,532 - 53,766,034 (+)	NCBI
Rnor_6.0	7	61,174,369 - 61,200,865 (+)	NCBI
Rnor_5.0	7	61,161,294 - 61,197,124 (+)	NCBI
RGSC_v3.4	7	57,455,598 - 57,482,092 (+)	RGD
Celera	7	50,507,908 - 50,534,254 (+)	NCBI

Sequence:

show sequence

CGGTGCGTCGTCGGGGACGCCCGGTCCAGTATCTTGCTAGGGAACCAGTGTTGTCGCCCCGCCC
CCTCGGGGCTTTTAGTCCCGTTAACTGTCGGCCGGGCTGGTTCCGCAGGGCAGGGCGACATGCC
GGTGCGCTTCAAGGGGCTGAGTGAATACCAGAGAAACTTCCTGTGGAAAAAGTCCTATTTGTCA
GAGTCCTATAATCCCTCAGTGGGGCAAAAGTACACATGGGCAGGACTTAGATCGGACCAGTTGG
GGATCACGAAAGAACCGAGTTTTATTTCAAAAAGAAGAGTCCCTTACTATGACCCTCAGATTTC
AAAATACCTGGAGTGGAATGGAACTGTCCGAGAGAATGATGCTCTTGCCCCACCAGAACCCCAG
ATTATCCGAACCCCAAAACCACAAGAAGCAGAGCAAAGAGAAGATGCTAACCACGAAACAGTTC
TCCCACAAGAGGCTTCCAGGGTCCCCAAGAGAACTCGATCTCATTCTGCAGACTCCAGAGCTGA
AGGGGCTTCAGACGGTGTGGAAAAGCACCAGGATGTCACAAAAAACCATTCACTAGTTAATGCA
GACGTGGAGCTGAGACCTTCCACCAAACCTCTTCCTGAGAGTATAGAACCCAGGTTGGACAGGC
ATCTTCGCAAGAAAGCTGGATTGGCCGTTGTCCCCTTGAATAATGCCTTGAGAAATTCTGAATA
CCAGAGGCAGTTTGTTTGGAAGACCTGTAAAGAAACTGCTCCAGTGTGTGCAGCCAATCAGGTT
TTCCGTAATAAAAGCCAAGTTATTCCACAGTTCCAAGGCAATACATTCATCCACGAAAGTGAAT
ATAAGCGAAATTTCAAGGGTTTAACTCCAGTGAAGGAACCGAAGTTGAGAGAGTATTTGAAAGG
AAACAGCAGTTTTGAGATATTGTCTCCAGAGAAGAAGGCAGACGAGCCTTTAGACTTAGAAGTA
GACATGGCGTCGGAAGACTCAGACCAGCCTATAAAGAAGCCTGCTCCTTGGAGACATCAAAGGC
TTGGAAAGGTGAATTCTGAATATAGAGCAAAATTTCTGAGCCCAGCCCAGTATTTATATAAGGC
TGGAGCTTGGACGCGTGTGAAGGAGAGCTTGTCGCACCAGGGTTCTCTAAATGCCATGTGGTAT
GCAGAGGTTAAGGAGCTCCGGGAAAAGGCTGAGTCCTATCGGAAGCGAGTTCAGGGGACGCATT
TTTCTCGGGACCATCTGAATCAGATTATGTCTGACAGCAACTGCTGTTGGGATGTCTCCTCAGT
CGCAAGCTCGGAAGGCACCATTAGTAGCAACATCCAAGCCCTGGATCTTGCTGGAGATCTTACA
AGCCACAGGACCCTCCAGAAACACCCTCCTACCAAACTGGAAGAGAAAAAAGTTGCATTGGCAG
AACAGCCCCTGGAAAATACCATCAGGAGCCTGGAGCTGCCAGAGGCTCCCACCATGGCCAGGAG
GAAGTTGGCTTGGGATGCTGCGGAGGGCACACAGAAGGAAGATACCCAGGAGGAGCCCAGTGGG
GAGGAGGACGGGAGAGAGGCCAGAGGAAAGGACAAGCAGGTCTGTGCAGGAGAGCTACAGAAAG
TGGACATGCAGACATCTAAGGCAGACGGACCGACAGAAGGGTCAGAAACGTCTTCCGTTTCCTC
AGGGAAGGGAGGCAGACTTCCGACACCAAGACTGAGAGAGCTCGGTATCCAGCGGACTCACCAT
GATCTCACAACTCCAGCTGTTGGTGGAGCGGTCTTAGTGTCTCCAGCTAAAGCGAAGCCGTCAG
CCCTGGAGCAAAGGAGGAGACCATCCTCCCAAGATGGCTTGGAGACTCTGAAGAAAGGCATTAC
TAAGAAAGGAAAACACCGTCCTCTCTCTCTCCTGACTTCTCCTACTGCCGGCATGAAAACAGTT
GATCCCCTGCCTTTGCGACAAGATTGTGACGCCAATGTGCTCAGAGTTGCTGAGGGTACTCTTC
CTGTTTTGAAAAATTTGGACCATCAGACCAACACTCCTGGACAGCCTTCTCCATGTACCCTGCC
TTACTGTCATCCTTCCAGCAGGATCCAGGGGCGTCTTCGAGACCCTGAATTTCAGCATAACATA
GGAAAACCAAGGATGAACAACACGCAGTTACTTCCACATGGCGCCTTTAATGACGAAGATGCAG
ACAGACTGTCTGAGATCTCCGCTCGCTCTGCGGTTTCCAGCCTCCAGGCTTTCCAGACTTTAGC
CCGAGCTCAGAAAAGAAAGGAGAATTTCTGGGGCAAACCGTAAACCTGCTCATCTGACCTAGAG
AAAAGTGGGCCTCATCTTTCCTTGCTTGTTGTGTAAAGATCTCTGGAGGGTGTGGATTTTCTTC
CAACGCTTCTGACTCAGATAATTTGAGTTCTCAGTGGCTCGTCTTACCCAGAAAACTGTAATGT
AGCGGTGTCCAAGTTTAAGTCTTTGAGAAGTCCTTTGCACTTGTCTGAGGACAAAGGCGTAGAT
TGTGTAGTTCTTCATACTCTGTCTTCTGCAGCAGGTGTCGGGGTTGCTGTGAGACGTGTGAAGG
TCATCTGTCTGGAGAATATTCTAAAGGGATAAATGAACTCAAAATTAAGGTCTTCCAACTTAAT
CCCCTCTCAGATTGGTTTTAGGCATTTTAATAGCTGTAGGTGTCATGAAAGGAATCTGCCACTT
TTTATTAGCACCTTCTGTATACACAGGTGCAGTGTTAAGATGATTGGACTTTGAAAATCTGGCT
GTACATATTTTCTTATTTATGTAACAAAATTTGCTGAGAGAATATGTATATTTTTGATCTTTTT
ATGCATTTTATTTGTATAATTGGCATACATTTGAATAATGTCTAGATTTTGAGAAATTATTTGT
GTAATGGAGAATTGAAACTTTGTAGACTGAAAAGTAAATGCACTTGGCTTCCTCAGAGTTATCA
TGTGGAGTAAATACCTTGTAGAAGCGTTCTGTTAGGACTGGTTAATCAGAAATCATTCTACCAT
TGCAGCTGCTAAATGCAGTGAAACCGAGTCTACAGTATTTGGGGTTTTTTTGCACAAATACAAG
GTTTTAAAAAGATTCATTAAAAAATTTAACACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006241385 ⟹ XP_006241447

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	53,739,500 - 53,766,034 (+)	NCBI
Rnor_6.0	7	61,174,340 - 61,200,865 (+)	NCBI
Rnor_5.0	7	61,161,294 - 61,197,124 (+)	NCBI

Sequence:

show sequence

GCAGAGAGGCGGGGCGGCGCGGAGTGCGCCGGTGCGTCGTCGGGGACGCCCGGTCCAGTATCTT
GCTAGGGAACCAGTGTTGTCGCCCCGCCCCCTCGGGGCTTTTAGTCCCGTTAACTGTCGGCCGG
GCTGGTTCCGCAGGGCAGGGCGACATGCCGGTGCGCTTCAAGGGGCTGAGTGAATACCAGAGAA
ACTTCCTGTGGAAAAAGTCCTATTTGTCAGAGTCCTATAATCCCTCAGTGGGGCAAAAGTACAC
ATGGGCAGGACTTAGATCGGACCAGTTGGGGATCACGAAAGAACCGAGTTTTATTTCAAAAAGA
AGAGTCCCTTACTATGACCCTCAGATTTCAAAATACCTGGAGTGGAATGGAACTGTCCGAGAGA
ATGATGCTCTTGCCCCACCAGAACCCCAGATTATCCGAACCCCAAAACCACAAGAAGCAGAGCA
AAGAGAAGATGCTAACCACGAAACAGTTCTCCCACAAGAGGCTTCCAGGGTCCCCAAGAGAACT
CGATCTCATTCTGCAGACTCCAGAGCTGAAGGGGCTTCAGACGGTGTGGAAAAGCACCAGGATG
TCACAAAAAACCATTCACTAGTTAATGCAGACGTGGAGCTGAGACCTTCCACCAAACCTCTTCC
TGAGAGTATAGAACCCAGGTTGGACAGGCATCTTCGCAAGAAAGCTGGATTGGCCGTTGTCCCC
TTGAATAATGCCTTGAGAAATTCTGAATACCAGAGGCAGTTTGTTTGGAAGACCTGTAAAGAAA
CTGCTCCAGTGTGTGCAGCCAATCAGGTTTTCCGTAATAAAAGCCAAGTTATTCCACAGTTCCA
AGGCAATACATTCATCCACGAAAGTGAATATAAGCGAAATTTCAAGGGTTTAACTCCAGTGAAG
GAACCGAAGTTGAGAGAGTATTTGAAAGGAAACAGCAGTTTTGAGATATTGTCTCCAGAGAAGA
AGGCAGACGAGCCTTTAGACTTAGAAGTAGACATGGCGTCGGAAGACTCAGACCAGCCTATAAA
GAAGCCTGCTCCTTGGAGACATCAAAGGCTTGGAAAGGTGAATTCTGAATATAGAGCAAAATTT
CTGAGCCCAGCCCAGTATTTATATAAGGCTGGAGCTTGGACGCGTGTGAAGGAGAGCTTGTCGC
ACCAGGGTTCTCTAAATGCCATGTGGTATGCAGAGGTTAAGGAGCTCCGGGAAAAGGCTGAGTC
CTATCGGAAGCGAGTTCAGGGGACGCATTTTTCTCGGGACCATCTGAATCAGATTATGTCTGAC
AGCAACTGCTGTTGGGATGTCTCCTCAGTCGCAAGCTCGGAAGGCACCATTAGTAGCAACATCC
AAGCCCTGGATCTTGCTGGAGATCTTACAAGCCACAGGACCCTCCAGAAACACCCTCCTACCAA
ACTGGAAGAGAAAAAAGTTGCATTGGCAGAACAGCCCCTGGAAAATACCATCAGGAGCCTGGAG
CTGCCAGAGGCTCCCACCATGGCCAGGAGGAAGTTGGCTTGGGATGCTGCGGAGGGCACACAGA
AGGAAGATACCCAGGAGGAGCCCAGTGGGGAGGAGGACGGGAGAGAGGCCAGAGGAAAGGACAA
GCAGGTCTGTGCAGGAGAGCTACAGAAAGTGGACATGCAGACATCTAAGGCAGACGGACCGACA
GAAGGGTCAGAAACGTCTTCCGTTTCCTCAGGGAAGGGAGGCAGACTTCCGACACCAAGACTGA
GAGAGCTCGGTATCCAGCGGACTCACCATGATCTCACAACTCCAGCTGTTGGTGGAGCGGTCTT
AGTGTCTCCAGCTAAAGCGAAGCCGTCAGCCCTGGAGCAAAGGAGGAGACCATCCTCCCAAGAT
GGCTTGGAGACTCTGAAGAAAGGCATTACTAAGAAAGGAAAACACCGTCCTCTCTCTCTCCTGA
CTTCTCCTACTGCCGGCATGAAAACAGTTGATCCCCTGCCTTTGCGACAAGATTGTGACGCCAA
TGTGCTCAGAGTTGCTGAGGGTACTCTTCCTGTTTTGAAAAATTTGGACCATCAGACCAACACT
CCTGGACAGCCTTCTCCATGTACCCTGCCTTACTGTCATCCTTCCAGCAGGATCCAGGGGCGTC
TTCGAGACCCTGAATTTCAGCATAACAGAAAACCAAGGATGAACAACACGCAGTTACTTCCACA
TGGCGCCTTTAATGACGAAGATGCAGACAGACTGTCTGAGATCTCCGCTCGCTCTGCGGTTTCC
AGCCTCCAGGCTTTCCAGACTTTAGCCCGAGCTCAGAAAAGAAAGGAGAATTTCTGGGGCAAAC
CGTAAACCTGCTCATCTGACCTAGAGAAAAGTGGGCCTCATCTTTCCTTGCTTGTTGTGTAAAG
ATCTCTGGAGGGTGTGGATTTTCTTCCAACGCTTCTGACTCAGATAATTTGAGTTCTCAGTGGC
TCGTCTTACCCAGAAAACTGTAATGTAGCGGTGTCCAAGTTTAAGTCTTTGAGAAGTCCTTTGC
ACTTGTCTGAGGACAAAGGCGTAGATTGTGTAGTTCTTCATACTCTGTCTTCTGCAGCAGGTGT
CGGGGTTGCTGTGAGACGTGTGAAGGTCATCTGTCTGGAGAATATTCTAAAGGGATAAATGAAC
TCAAAATTAAGGTCTTCCAACTTAATCCCCTCTCAGATTGGTTTTAGGCATTTTAATAGCTGTA
GGTGTCATGAAAGGAATCTGCCACTTTTTATTAGCACCTTCTGTATACACAGGTGCAGTGTTAA
GATGATTGGACTTTGAAAATCTGGCTGTACATATTTTCTTATTTATGTAACAAAATTTGCTGAG
AGAATATGTATATTTTTGATCTTTTTATGCATTTTATTTGTATAATTGGCATACATTTGAATAA
TGTCTAGATTTTGAGAAATTATTTGTGTAATGGAGAATTGAAACTTTGTAGACTGAAAAGTAAA
TGCACTTGGCTTCCTCAGAGTTATCATGTGGAGTAAATACCTTGTAGAAGCGTTCTGTTAGGAC
TGGTTAATCAGAAATCATTCTACCATTGCAGCTGCTAAATGCAGTGAAACCGAGTCTACAGTAT
TTGGGGTTTTTTTGCACAAATACAAGGTTTTAAAAAGATTCATTAAAAAATTTAACACCAA

hide sequence

RefSeq Acc Id:

XM_006241387 ⟹ XP_006241449

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	53,739,280 - 53,766,034 (+)	NCBI
Rnor_6.0	7	61,174,158 - 61,200,865 (+)	NCBI
Rnor_5.0	7	61,161,294 - 61,197,124 (+)	NCBI

Sequence:

show sequence

CCCGCAGCCTCCTGGACAAAGCTCCCGCGGGCCCCGCCCAACGCAGCTCCCGTGTCCTCATTGG
CTAGCTCTCTGCCCGCCATTAGGGAGCGGGGCGGTGCCCTTCCGAGTGCTGGTTGGTCTAATCG
TAATGACGGGGCTGAGTGAATACCAGAGAAACTTCCTGTGGAAAAAGTCCTATTTGTCAGAGTC
CTATAATCCCTCAGTGGGGCAAAAGTACACATGGGCAGGACTTAGATCGGACCAGTTGGGGATC
ACGAAAGAACCGAGTTTTATTTCAAAAAGAAGAGTCCCTTACTATGACCCTCAGATTTCAAAAT
ACCTGGAGTGGAATGGAACTGTCCGAGAGAATGATGCTCTTGCCCCACCAGAACCCCAGATTAT
CCGAACCCCAAAACCACAAGAAGCAGAGCAAAGAGAAGATGCTAACCACGAAACAGTTCTCCCA
CAAGAGGCTTCCAGGGTCCCCAAGAGAACTCGATCTCATTCTGCAGACTCCAGAGCTGAAGGGG
CTTCAGACGGTGTGGAAAAGCACCAGGATGTCACAAAAAACCATTCACTAGTTAATGCAGACGT
GGAGCTGAGACCTTCCACCAAACCTCTTCCTGAGAGTATAGAACCCAGGTTGGACAGGCATCTT
CGCAAGAAAGCTGGATTGGCCGTTGTCCCCTTGAATAATGCCTTGAGAAATTCTGAATACCAGA
GGCAGTTTGTTTGGAAGACCTGTAAAGAAACTGCTCCAGTGTGTGCAGCCAATCAGGTTTTCCG
TAATAAAAGCCAAGTTATTCCACAGTTCCAAGGCAATACATTCATCCACGAAAGTGAATATAAG
CGAAATTTCAAGGGTTTAACTCCAGTGAAGGAACCGAAGTTGAGAGAGTATTTGAAAGGAAACA
GCAGTTTTGAGATATTGTCTCCAGAGAAGAAGGCAGACGAGCCTTTAGACTTAGAAGTAGACAT
GGCGTCGGAAGACTCAGACCAGCCTATAAAGAAGCCTGCTCCTTGGAGACATCAAAGGCTTGGA
AAGGTGAATTCTGAATATAGAGCAAAATTTCTGAGCCCAGCCCAGTATTTATATAAGGCTGGAG
CTTGGACGCGTGTGAAGGAGAGCTTGTCGCACCAGGGTTCTCTAAATGCCATGTGGTATGCAGA
GGTTAAGGAGCTCCGGGAAAAGGCTGAGTCCTATCGGAAGCGAGTTCAGGGGACGCATTTTTCT
CGGGACCATCTGAATCAGATTATGTCTGACAGCAACTGCTGTTGGGATGTCTCCTCAGTCGCAA
GCTCGGAAGGCACCATTAGTAGCAACATCCAAGCCCTGGATCTTGCTGGAGATCTTACAAGCCA
CAGGACCCTCCAGAAACACCCTCCTACCAAACTGGAAGAGAAAAAAGTTGCATTGGCAGAACAG
CCCCTGGAAAATACCATCAGGAGCCTGGAGCTGCCAGAGGCTCCCACCATGGCCAGGAGGAAGT
TGGCTTGGGATGCTGCGGAGGGCACACAGAAGGAAGATACCCAGGAGGAGCCCAGTGGGGAGGA
GGACGGGAGAGAGGCCAGAGGAAAGGACAAGCAGGTCTGTGCAGGAGAGCTACAGAAAGTGGAC
ATGCAGACATCTAAGGCAGACGGACCGACAGAAGGGTCAGAAACGTCTTCCGTTTCCTCAGGGA
AGGGAGGCAGACTTCCGACACCAAGACTGAGAGAGCTCGGTATCCAGCGGACTCACCATGATCT
CACAACTCCAGCTGTTGGTGGAGCGGTCTTAGTGTCTCCAGCTAAAGCGAAGCCGTCAGCCCTG
GAGCAAAGGAGGAGACCATCCTCCCAAGATGGCTTGGAGACTCTGAAGAAAGGCATTACTAAGA
AAGGAAAACACCGTCCTCTCTCTCTCCTGACTTCTCCTACTGCCGGCATGAAAACAGTTGATCC
CCTGCCTTTGCGACAAGATTGTGACGCCAATGTGCTCAGAGTTGCTGAGGGTACTCTTCCTGTT
TTGAAAAATTTGGACCATCAGACCAACACTCCTGGACAGCCTTCTCCATGTACCCTGCCTTACT
GTCATCCTTCCAGCAGGATCCAGGGGCGTCTTCGAGACCCTGAATTTCAGCATAACATAGGAAA
ACCAAGGATGAACAACACGCAGTTACTTCCACATGGCGCCTTTAATGACGAAGATGCAGACAGA
CTGTCTGAGATCTCCGCTCGCTCTGCGGTTTCCAGCCTCCAGGCTTTCCAGACTTTAGCCCGAG
CTCAGAAAAGAAAGGAGAATTTCTGGGGCAAACCGTAAACCTGCTCATCTGACCTAGAGAAAAG
TGGGCCTCATCTTTCCTTGCTTGTTGTGTAAAGATCTCTGGAGGGTGTGGATTTTCTTCCAACG
CTTCTGACTCAGATAATTTGAGTTCTCAGTGGCTCGTCTTACCCAGAAAACTGTAATGTAGCGG
TGTCCAAGTTTAAGTCTTTGAGAAGTCCTTTGCACTTGTCTGAGGACAAAGGCGTAGATTGTGT
AGTTCTTCATACTCTGTCTTCTGCAGCAGGTGTCGGGGTTGCTGTGAGACGTGTGAAGGTCATC
TGTCTGGAGAATATTCTAAAGGGATAAATGAACTCAAAATTAAGGTCTTCCAACTTAATCCCCT
CTCAGATTGGTTTTAGGCATTTTAATAGCTGTAGGTGTCATGAAAGGAATCTGCCACTTTTTAT
TAGCACCTTCTGTATACACAGGTGCAGTGTTAAGATGATTGGACTTTGAAAATCTGGCTGTACA
TATTTTCTTATTTATGTAACAAAATTTGCTGAGAGAATATGTATATTTTTGATCTTTTTATGCA
TTTTATTTGTATAATTGGCATACATTTGAATAATGTCTAGATTTTGAGAAATTATTTGTGTAAT
GGAGAATTGAAACTTTGTAGACTGAAAAGTAAATGCACTTGGCTTCCTCAGAGTTATCATGTGG
AGTAAATACCTTGTAGAAGCGTTCTGTTAGGACTGGTTAATCAGAAATCATTCTACCATTGCAG
CTGCTAAATGCAGTGAAACCGAGTCTACAGTATTTGGGGTTTTTTTGCACAAATACAAGGTTTT
AAAAAGATTCATTAAAAAATTTAACACCAA

hide sequence

RefSeq Acc Id:

XM_006241388 ⟹ XP_006241450

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	53,739,502 - 53,766,034 (+)	NCBI
Rnor_6.0	7	61,174,340 - 61,200,865 (+)	NCBI
Rnor_5.0	7	61,161,294 - 61,197,124 (+)	NCBI

Sequence:

show sequence

GCAGAGAGGCGGGGCGGCGCGGAGTGCGCCGGTGCGTCGTCGGGGACGCCCGGTCCAGTATCTT
GCTAGGGAACCAGTGTTGTCGCCCCGCCCCCTCGGGGCTTTTAGTCCCGTTAACTGTCGGCCGG
GCTGGTTCCGCAGGGCAGGGCGACATGCCGGTGCGCTTCAAGGGGCTGAGTGAATACCAGAGAA
ACTTCCTGTGGAAAAAGTCCTATTTGTCAGAGTCCTATAATCCCTCAGTGGGGCAAAAGTACAC
ATGGGCAGGACTTAGATCGGACCAGTTGGGGATCACGAAAGAACCGAGTTTTATTTCAAAAAGA
AGAGTCCCTTACTATGACCCTCAGATTTCAAAATACCTGGAGTGGAATGGAACTGTCCGAGAGA
ATGATGCTCTTGCCCCACCAGAACCCCAGATTATCCGAACCCCAAAACCACAAGAAGCAGAGCA
AAGAGAAGATGCTAACCACGAAACAGTTCTCCCACAAGAGGCTTCCAGGGTCCCCAAGAGAACT
CGATCTCATTCTGCAGACTCCAGAGCTGAAGGGGCTTCAGACGGTGTGGAAAAGCACCAGGATG
TCACAAAAAACCATTCACTAGTTAATGCAGACGTGGAGCTGAGACCTTCCACCAAACCTCTTCC
TGAGAGTATAGAACCCAGGTTGGACAGGCATCTTCGCAAGAAAGCTGGATTGGCCGTTGTCCCC
TTGAATAATGCCTTGAGAAATTCTGAATACCAGAGGCAGTTTGTTTGGAAGACCTGTAAAGAAA
CTGCTCCAGTGTGTGCAGCCAATCAGGTTTTCCGTAATAAAAGCCAAGTTATTCCACAGTTCCA
AGGCAATACATTCATCCACGAAAGTGAATATAAGCGAAATTTCAAGGGTTTAACTCCAGTGAAG
GAACCGAAGTTGAGAGAGTATTTGAAAGGAAACAGCAGTTTTGAGATATTGTCTCCAGAGAAGA
AGGCAGACGAGCCTTTAGACTTAGAAGTAGACATGGCGTCGGAAGACTCAGACCAGCCTATAAA
GAAGCCTGCTCCTTGGAGACATCAAAGGCTTGGAAAGGTGAATTCTGAATATAGAGCAAAATTT
CTGAGCCCAGCCCAGTATTTATATAAGGCTGGAGCTTGGACGCGTGTGAAGGAGAGCTTGTCGC
ACCAGGTTAAGGAGCTCCGGGAAAAGGCTGAGTCCTATCGGAAGCGAGTTCAGGGGACGCATTT
TTCTCGGGACCATCTGAATCAGATTATGTCTGACAGCAACTGCTGTTGGGATGTCTCCTCAGTC
GCAAGCTCGGAAGGCACCATTAGTAGCAACATCCAAGCCCTGGATCTTGCTGGAGATCTTACAA
GCCACAGGACCCTCCAGAAACACCCTCCTACCAAACTGGAAGAGAAAAAAGTTGCATTGGCAGA
ACAGCCCCTGGAAAATACCATCAGGAGCCTGGAGCTGCCAGAGGCTCCCACCATGGCCAGGAGG
AAGTTGGCTTGGGATGCTGCGGAGGGCACACAGAAGGAAGATACCCAGGAGGAGCCCAGTGGGG
AGGAGGACGGGAGAGAGGCCAGAGGAAAGGACAAGCAGGTCTGTGCAGGAGAGCTACAGAAAGT
GGACATGCAGACATCTAAGGCAGACGGACCGACAGAAGGGTCAGAAACGTCTTCCGTTTCCTCA
GGGAAGGGAGGCAGACTTCCGACACCAAGACTGAGAGAGCTCGGTATCCAGCGGACTCACCATG
ATCTCACAACTCCAGCTGTTGGTGGAGCGGTCTTAGTGTCTCCAGCTAAAGCGAAGCCGTCAGC
CCTGGAGCAAAGGAGGAGACCATCCTCCCAAGATGGCTTGGAGACTCTGAAGAAAGGCATTACT
AAGAAAGGAAAACACCGTCCTCTCTCTCTCCTGACTTCTCCTACTGCCGGCATGAAAACAGTTG
ATCCCCTGCCTTTGCGACAAGATTGTGACGCCAATGTGCTCAGAGTTGCTGAGGGTACTCTTCC
TGTTTTGAAAAATTTGGACCATCAGACCAACACTCCTGGACAGCCTTCTCCATGTACCCTGCCT
TACTGTCATCCTTCCAGCAGGATCCAGGGGCGTCTTCGAGACCCTGAATTTCAGCATAACATAG
GAAAACCAAGGATGAACAACACGCAGTTACTTCCACATGGCGCCTTTAATGACGAAGATGCAGA
CAGACTGTCTGAGATCTCCGCTCGCTCTGCGGTTTCCAGCCTCCAGGCTTTCCAGACTTTAGCC
CGAGCTCAGAAAAGAAAGGAGAATTTCTGGGGCAAACCGTAAACCTGCTCATCTGACCTAGAGA
AAAGTGGGCCTCATCTTTCCTTGCTTGTTGTGTAAAGATCTCTGGAGGGTGTGGATTTTCTTCC
AACGCTTCTGACTCAGATAATTTGAGTTCTCAGTGGCTCGTCTTACCCAGAAAACTGTAATGTA
GCGGTGTCCAAGTTTAAGTCTTTGAGAAGTCCTTTGCACTTGTCTGAGGACAAAGGCGTAGATT
GTGTAGTTCTTCATACTCTGTCTTCTGCAGCAGGTGTCGGGGTTGCTGTGAGACGTGTGAAGGT
CATCTGTCTGGAGAATATTCTAAAGGGATAAATGAACTCAAAATTAAGGTCTTCCAACTTAATC
CCCTCTCAGATTGGTTTTAGGCATTTTAATAGCTGTAGGTGTCATGAAAGGAATCTGCCACTTT
TTATTAGCACCTTCTGTATACACAGGTGCAGTGTTAAGATGATTGGACTTTGAAAATCTGGCTG
TACATATTTTCTTATTTATGTAACAAAATTTGCTGAGAGAATATGTATATTTTTGATCTTTTTA
TGCATTTTATTTGTATAATTGGCATACATTTGAATAATGTCTAGATTTTGAGAAATTATTTGTG
TAATGGAGAATTGAAACTTTGTAGACTGAAAAGTAAATGCACTTGGCTTCCTCAGAGTTATCAT
GTGGAGTAAATACCTTGTAGAAGCGTTCTGTTAGGACTGGTTAATCAGAAATCATTCTACCATT
GCAGCTGCTAAATGCAGTGAAACCGAGTCTACAGTATTTGGGGTTTTTTTGCACAAATACAAGG
TTTTAAAAAGATTCATTAAAAAATTTAACACCAA

hide sequence

RefSeq Acc Id:

XM_008765400 ⟹ XP_008763622

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	53,729,603 - 53,766,034 (+)	NCBI
Rnor_6.0	7	61,165,652 - 61,200,865 (+)	NCBI

Sequence:

show sequence

ATTCTCAGCGATTTGTTAACCGGATCGTCATCTTGTGGAGTTTCAAGAGGGAACGGAGAGAAGT
GCATACATCTGGCCTGGCGTTATATCCTCTAGAATAATTTGAAGAGGAAATAATTTATTCTAGC
TTTTGCAAGGTTATAGCTCTGTGGAGAAAGGAAGCCGCCCACTCCACTGCTGGTGTGACTGACA
ACAGATGCCTGAGTTCTGCTCTTCTGTATTACACAGTCTGTTCGAGCGCCTCTGATGTGCAGAA
TGGGAGTTATACCTGCATGTCTGCAGCACAGCCGTCTAAGGTCAAGAGATATCAGGTGGCTTCT
TCAAATGAATTTTTAAGTTAATGAAGAAGATCAGAGACGTCAATTAGGAACTGGGAAGACAAGG
CTGCAGGAAGTGCTTAAAGGAGCCGTGAAGGGGTGATGGGAACATCCTAGCACATGACAAAGGG
GCTGAGTGAATACCAGAGAAACTTCCTGTGGAAAAAGTCCTATTTGTCAGAGTCCTATAATCCC
TCAGTGGGGCAAAAGTACACATGGGCAGGACTTAGATCGGACCAGTTGGGGATCACGAAAGAAC
CGAGTTTTATTTCAAAAAGAAGAGTCCCTTACTATGACCCTCAGATTTCAAAATACCTGGAGTG
GAATGGAACTGTCCGAGAGAATGATGCTCTTGCCCCACCAGAACCCCAGATTATCCGAACCCCA
AAACCACAAGAAGCAGAGCAAAGAGAAGATGCTAACCACGAAACAGTTCTCCCACAAGAGGCTT
CCAGGGTCCCCAAGAGAACTCGATCTCATTCTGCAGACTCCAGAGCTGAAGGGGCTTCAGACGG
TGTGGAAAAGCACCAGGATGTCACAAAAAACCATTCACTAGTTAATGCAGACGTGGAGCTGAGA
CCTTCCACCAAACCTCTTCCTGAGAGTATAGAACCCAGGTTGGACAGGCATCTTCGCAAGAAAG
CTGGATTGGCCGTTGTCCCCTTGAATAATGCCTTGAGAAATTCTGAATACCAGAGGCAGTTTGT
TTGGAAGACCTGTAAAGAAACTGCTCCAGTGTGTGCAGCCAATCAGGTTTTCCGTAATAAAAGC
CAAGTTATTCCACAGTTCCAAGGCAATACATTCATCCACGAAAGTGAATATAAGCGAAATTTCA
AGGGTTTAACTCCAGTGAAGGAACCGAAGTTGAGAGAGTATTTGAAAGGAAACAGCAGTTTTGA
GATATTGTCTCCAGAGAAGAAGGCAGACGAGCCTTTAGACTTAGAAGTAGACATGGCGTCGGAA
GACTCAGACCAGCCTATAAAGAAGCCTGCTCCTTGGAGACATCAAAGGCTTGGAAAGGTGAATT
CTGAATATAGAGCAAAATTTCTGAGCCCAGCCCAGTATTTATATAAGGCTGGAGCTTGGACGCG
TGTGAAGGAGAGCTTGTCGCACCAGGGTTCTCTAAATGCCATGTGGTATGCAGAGGTTAAGGAG
CTCCGGGAAAAGGCTGAGTCCTATCGGAAGCGAGTTCAGGGGACGCATTTTTCTCGGGACCATC
TGAATCAGATTATGTCTGACAGCAACTGCTGTTGGGATGTCTCCTCAGTCGCAAGCTCGGAAGG
CACCATTAGTAGCAACATCCAAGCCCTGGATCTTGCTGGAGATCTTACAAGCCACAGGACCCTC
CAGAAACACCCTCCTACCAAACTGGAAGAGAAAAAAGTTGCATTGGCAGAACAGCCCCTGGAAA
ATACCATCAGGAGCCTGGAGCTGCCAGAGGCTCCCACCATGGCCAGGAGGAAGTTGGCTTGGGA
TGCTGCGGAGGGCACACAGAAGGAAGATACCCAGGAGGAGCCCAGTGGGGAGGAGGACGGGAGA
GAGGCCAGAGGAAAGGACAAGCAGGTCTGTGCAGGAGAGCTACAGAAAGTGGACATGCAGACAT
CTAAGGCAGACGGACCGACAGAAGGGTCAGAAACGTCTTCCGTTTCCTCAGGGAAGGGAGGCAG
ACTTCCGACACCAAGACTGAGAGAGCTCGGTATCCAGCGGACTCACCATGATCTCACAACTCCA
GCTGTTGGTGGAGCGGTCTTAGTGTCTCCAGCTAAAGCGAAGCCGTCAGCCCTGGAGCAAAGGA
GGAGACCATCCTCCCAAGATGGCTTGGAGACTCTGAAGAAAGGCATTACTAAGAAAGGAAAACA
CCGTCCTCTCTCTCTCCTGACTTCTCCTACTGCCGGCATGAAAACAGTTGATCCCCTGCCTTTG
CGACAAGATTGTGACGCCAATGTGCTCAGAGTTGCTGAGGGTACTCTTCCTGTTTTGAAAAATT
TGGACCATCAGACCAACACTCCTGGACAGCCTTCTCCATGTACCCTGCCTTACTGTCATCCTTC
CAGCAGGATCCAGGGGCGTCTTCGAGACCCTGAATTTCAGCATAACATAGGAAAACCAAGGATG
AACAACACGCAGTTACTTCCACATGGCGCCTTTAATGACGAAGATGCAGACAGACTGTCTGAGA
TCTCCGCTCGCTCTGCGGTTTCCAGCCTCCAGGCTTTCCAGACTTTAGCCCGAGCTCAGAAAAG
AAAGGAGAATTTCTGGGGCAAACCGTAAACCTGCTCATCTGACCTAGAGAAAAGTGGGCCTCAT
CTTTCCTTGCTTGTTGTGTAAAGATCTCTGGAGGGTGTGGATTTTCTTCCAACGCTTCTGACTC
AGATAATTTGAGTTCTCAGTGGCTCGTCTTACCCAGAAAACTGTAATGTAGCGGTGTCCAAGTT
TAAGTCTTTGAGAAGTCCTTTGCACTTGTCTGAGGACAAAGGCGTAGATTGTGTAGTTCTTCAT
ACTCTGTCTTCTGCAGCAGGTGTCGGGGTTGCTGTGAGACGTGTGAAGGTCATCTGTCTGGAGA
ATATTCTAAAGGGATAAATGAACTCAAAATTAAGGTCTTCCAACTTAATCCCCTCTCAGATTGG
TTTTAGGCATTTTAATAGCTGTAGGTGTCATGAAAGGAATCTGCCACTTTTTATTAGCACCTTC
TGTATACACAGGTGCAGTGTTAAGATGATTGGACTTTGAAAATCTGGCTGTACATATTTTCTTA
TTTATGTAACAAAATTTGCTGAGAGAATATGTATATTTTTGATCTTTTTATGCATTTTATTTGT
ATAATTGGCATACATTTGAATAATGTCTAGATTTTGAGAAATTATTTGTGTAATGGAGAATTGA
AACTTTGTAGACTGAAAAGTAAATGCACTTGGCTTCCTCAGAGTTATCATGTGGAGTAAATACC
TTGTAGAAGCGTTCTGTTAGGACTGGTTAATCAGAAATCATTCTACCATTGCAGCTGCTAAATG
CAGTGAAACCGAGTCTACAGTATTTGGGGTTTTTTTGCACAAATACAAGGTTTTAAAAAGATTC
ATTAAAAAATTTAACACCAA

hide sequence

RefSeq Acc Id:

XM_039079128 ⟹ XP_038935056

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	53,741,194 - 53,766,034 (+)	NCBI

RefSeq Acc Id:

XM_039079129 ⟹ XP_038935057

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	53,749,240 - 53,766,034 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001017459	(Get FASTA)	NCBI Sequence Viewer
	XP_006241447	(Get FASTA)	NCBI Sequence Viewer
	XP_006241449	(Get FASTA)	NCBI Sequence Viewer
	XP_006241450	(Get FASTA)	NCBI Sequence Viewer
	XP_008763622	(Get FASTA)	NCBI Sequence Viewer
	XP_038935056	(Get FASTA)	NCBI Sequence Viewer
	XP_038935057	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87101	(Get FASTA)	NCBI Sequence Viewer
	EDM16600	(Get FASTA)	NCBI Sequence Viewer
	EDM16601	(Get FASTA)	NCBI Sequence Viewer
	EDM16602	(Get FASTA)	NCBI Sequence Viewer
	Q5PQN4	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001017459 ⟸ NM_001017459

- UniProtKB:

Q5PQN4 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MPVRFKGLSEYQRNFLWKKSYLSESYNPSVGQKYTWAGLRSDQLGITKEPSFISKRRVPYYDPQ
ISKYLEWNGTVRENDALAPPEPQIIRTPKPQEAEQREDANHETVLPQEASRVPKRTRSHSADSR
AEGASDGVEKHQDVTKNHSLVNADVELRPSTKPLPESIEPRLDRHLRKKAGLAVVPLNNALRNS
EYQRQFVWKTCKETAPVCAANQVFRNKSQVIPQFQGNTFIHESEYKRNFKGLTPVKEPKLREYL
KGNSSFEILSPEKKADEPLDLEVDMASEDSDQPIKKPAPWRHQRLGKVNSEYRAKFLSPAQYLY
KAGAWTRVKESLSHQGSLNAMWYAEVKELREKAESYRKRVQGTHFSRDHLNQIMSDSNCCWDVS
SVASSEGTISSNIQALDLAGDLTSHRTLQKHPPTKLEEKKVALAEQPLENTIRSLELPEAPTMA
RRKLAWDAAEGTQKEDTQEEPSGEEDGREARGKDKQVCAGELQKVDMQTSKADGPTEGSETSSV
SSGKGGRLPTPRLRELGIQRTHHDLTTPAVGGAVLVSPAKAKPSALEQRRRPSSQDGLETLKKG
ITKKGKHRPLSLLTSPTAGMKTVDPLPLRQDCDANVLRVAEGTLPVLKNLDHQTNTPGQPSPCT
LPYCHPSSRIQGRLRDPEFQHNIGKPRMNNTQLLPHGAFNDEDADRLSEISARSAVSSLQAFQT
LARAQKRKENFWGKP

hide sequence

RefSeq Acc Id:

XP_006241449 ⟸ XM_006241387

- Peptide Label:

isoform X3

- Sequence:

show sequence

MTGLSEYQRNFLWKKSYLSESYNPSVGQKYTWAGLRSDQLGITKEPSFISKRRVPYYDPQISKY
LEWNGTVRENDALAPPEPQIIRTPKPQEAEQREDANHETVLPQEASRVPKRTRSHSADSRAEGA
SDGVEKHQDVTKNHSLVNADVELRPSTKPLPESIEPRLDRHLRKKAGLAVVPLNNALRNSEYQR
QFVWKTCKETAPVCAANQVFRNKSQVIPQFQGNTFIHESEYKRNFKGLTPVKEPKLREYLKGNS
SFEILSPEKKADEPLDLEVDMASEDSDQPIKKPAPWRHQRLGKVNSEYRAKFLSPAQYLYKAGA
WTRVKESLSHQGSLNAMWYAEVKELREKAESYRKRVQGTHFSRDHLNQIMSDSNCCWDVSSVAS
SEGTISSNIQALDLAGDLTSHRTLQKHPPTKLEEKKVALAEQPLENTIRSLELPEAPTMARRKL
AWDAAEGTQKEDTQEEPSGEEDGREARGKDKQVCAGELQKVDMQTSKADGPTEGSETSSVSSGK
GGRLPTPRLRELGIQRTHHDLTTPAVGGAVLVSPAKAKPSALEQRRRPSSQDGLETLKKGITKK
GKHRPLSLLTSPTAGMKTVDPLPLRQDCDANVLRVAEGTLPVLKNLDHQTNTPGQPSPCTLPYC
HPSSRIQGRLRDPEFQHNIGKPRMNNTQLLPHGAFNDEDADRLSEISARSAVSSLQAFQTLARA
QKRKENFWGKP

hide sequence

RefSeq Acc Id:

XP_006241447 ⟸ XM_006241385

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPVRFKGLSEYQRNFLWKKSYLSESYNPSVGQKYTWAGLRSDQLGITKEPSFISKRRVPYYDPQ
ISKYLEWNGTVRENDALAPPEPQIIRTPKPQEAEQREDANHETVLPQEASRVPKRTRSHSADSR
AEGASDGVEKHQDVTKNHSLVNADVELRPSTKPLPESIEPRLDRHLRKKAGLAVVPLNNALRNS
EYQRQFVWKTCKETAPVCAANQVFRNKSQVIPQFQGNTFIHESEYKRNFKGLTPVKEPKLREYL
KGNSSFEILSPEKKADEPLDLEVDMASEDSDQPIKKPAPWRHQRLGKVNSEYRAKFLSPAQYLY
KAGAWTRVKESLSHQGSLNAMWYAEVKELREKAESYRKRVQGTHFSRDHLNQIMSDSNCCWDVS
SVASSEGTISSNIQALDLAGDLTSHRTLQKHPPTKLEEKKVALAEQPLENTIRSLELPEAPTMA
RRKLAWDAAEGTQKEDTQEEPSGEEDGREARGKDKQVCAGELQKVDMQTSKADGPTEGSETSSV
SSGKGGRLPTPRLRELGIQRTHHDLTTPAVGGAVLVSPAKAKPSALEQRRRPSSQDGLETLKKG
ITKKGKHRPLSLLTSPTAGMKTVDPLPLRQDCDANVLRVAEGTLPVLKNLDHQTNTPGQPSPCT
LPYCHPSSRIQGRLRDPEFQHNRKPRMNNTQLLPHGAFNDEDADRLSEISARSAVSSLQAFQTL
ARAQKRKENFWGKP

hide sequence

RefSeq Acc Id:

XP_006241450 ⟸ XM_006241388

- Peptide Label:

isoform X4

- Sequence:

show sequence

MPVRFKGLSEYQRNFLWKKSYLSESYNPSVGQKYTWAGLRSDQLGITKEPSFISKRRVPYYDPQ
ISKYLEWNGTVRENDALAPPEPQIIRTPKPQEAEQREDANHETVLPQEASRVPKRTRSHSADSR
AEGASDGVEKHQDVTKNHSLVNADVELRPSTKPLPESIEPRLDRHLRKKAGLAVVPLNNALRNS
EYQRQFVWKTCKETAPVCAANQVFRNKSQVIPQFQGNTFIHESEYKRNFKGLTPVKEPKLREYL
KGNSSFEILSPEKKADEPLDLEVDMASEDSDQPIKKPAPWRHQRLGKVNSEYRAKFLSPAQYLY
KAGAWTRVKESLSHQVKELREKAESYRKRVQGTHFSRDHLNQIMSDSNCCWDVSSVASSEGTIS
SNIQALDLAGDLTSHRTLQKHPPTKLEEKKVALAEQPLENTIRSLELPEAPTMARRKLAWDAAE
GTQKEDTQEEPSGEEDGREARGKDKQVCAGELQKVDMQTSKADGPTEGSETSSVSSGKGGRLPT
PRLRELGIQRTHHDLTTPAVGGAVLVSPAKAKPSALEQRRRPSSQDGLETLKKGITKKGKHRPL
SLLTSPTAGMKTVDPLPLRQDCDANVLRVAEGTLPVLKNLDHQTNTPGQPSPCTLPYCHPSSRI
QGRLRDPEFQHNIGKPRMNNTQLLPHGAFNDEDADRLSEISARSAVSSLQAFQTLARAQKRKEN
FWGKP

hide sequence

RefSeq Acc Id:	XP_008763622 ⟸ XM_008765400
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2KB24 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTKGLSEYQRNFLWKKSYLSESYNPSVGQKYTWAGLRSDQLGITKEPSFISKRRVPYYDPQISK YLEWNGTVRENDALAPPEPQIIRTPKPQEAEQREDANHETVLPQEASRVPKRTRSHSADSRAEG ASDGVEKHQDVTKNHSLVNADVELRPSTKPLPESIEPRLDRHLRKKAGLAVVPLNNALRNSEYQ RQFVWKTCKETAPVCAANQVFRNKSQVIPQFQGNTFIHESEYKRNFKGLTPVKEPKLREYLKGN SSFEILSPEKKADEPLDLEVDMASEDSDQPIKKPAPWRHQRLGKVNSEYRAKFLSPAQYLYKAG AWTRVKESLSHQGSLNAMWYAEVKELREKAESYRKRVQGTHFSRDHLNQIMSDSNCCWDVSSVA SSEGTISSNIQALDLAGDLTSHRTLQKHPPTKLEEKKVALAEQPLENTIRSLELPEAPTMARRK LAWDAAEGTQKEDTQEEPSGEEDGREARGKDKQVCAGELQKVDMQTSKADGPTEGSETSSVSSG KGGRLPTPRLRELGIQRTHHDLTTPAVGGAVLVSPAKAKPSALEQRRRPSSQDGLETLKKGITK KGKHRPLSLLTSPTAGMKTVDPLPLRQDCDANVLRVAEGTLPVLKNLDHQTNTPGQPSPCTLPY CHPSSRIQGRLRDPEFQHNIGKPRMNNTQLLPHGAFNDEDADRLSEISARSAVSSLQAFQTLAR AQKRKENFWGKP hide sequence

RefSeq Acc Id:

ENSRNOP00000075623 ⟸ ENSRNOT00000087955

RefSeq Acc Id:

ENSRNOP00000041359 ⟸ ENSRNOT00000048765

RefSeq Acc Id:

ENSRNOP00000071496 ⟸ ENSRNOT00000091885

RefSeq Acc Id:	XP_038935056 ⟸ XM_039079128
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038935057 ⟸ XM_039079129
- Peptide Label:	isoform X6

RefSeq Acc Id:

ENSRNOP00000081317 ⟸ ENSRNOT00000118906

RefSeq Acc Id:

ENSRNOP00000091573 ⟸ ENSRNOT00000108196

RefSeq Acc Id:

ENSRNOP00000077918 ⟸ ENSRNOT00000114732

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5PQN4-F1-model_v2	AlphaFold	Q5PQN4	1-719	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695225

Promoter ID:

EPDNEW_R5744

Type:

initiation region

Name:

Mdm1_1

Description:

Mdm1 nuclear protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	61,174,446 - 61,174,506	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561092	AgrOrtholog
BioCyc Gene	G2FUF-33945	BioCyc
Ensembl Genes	ENSRNOG00000007286	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000041359	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000071496.2	UniProtKB/TrEMBL
	ENSRNOP00000075623	ENTREZGENE
	ENSRNOP00000075623.2	UniProtKB/TrEMBL
	ENSRNOP00000077918.1	UniProtKB/TrEMBL
	ENSRNOP00000081317	ENTREZGENE
	ENSRNOP00000081317.1	UniProtKB/TrEMBL
	ENSRNOP00000091573	ENTREZGENE
	ENSRNOP00000091573.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000048765	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000087955	ENTREZGENE
	ENSRNOT00000087955.2	UniProtKB/TrEMBL
	ENSRNOT00000091885.2	UniProtKB/TrEMBL
	ENSRNOT00000108196	ENTREZGENE
	ENSRNOT00000108196.1	UniProtKB/TrEMBL
	ENSRNOT00000114732.1	UniProtKB/TrEMBL
	ENSRNOT00000118906	ENTREZGENE
	ENSRNOT00000118906.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7192579	IMAGE-MGC_LOAD
InterPro	MDM1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:314859	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94684	IMAGE-MGC_LOAD
NCBI Gene	314859	ENTREZGENE
PANTHER	PTHR32078	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	MDM1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Mdm1	PhenoGen
UniProt	A0A0G2K0L7_RAT	UniProtKB/TrEMBL
	A0A0G2KB24	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5YCK2_RAT	UniProtKB/TrEMBL
	A0A8I5ZUT4_RAT	UniProtKB/TrEMBL
	A0A8I6GJR7_RAT	UniProtKB/TrEMBL
	MDM1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-06-26	Mdm1	Mdm1 nuclear protein	Mdm1	Mdm1 nuclear protein homolog (mouse)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-24	Mdm1	Mdm1 nuclear protein homolog (mouse)	Mdm1	transformed mouse 3T3 cell double minute 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Mdm1	transformed mouse 3T3 cell double minute 1	LOC314859	similar to transformed mouse 3T3 cell double minute 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC314859	similar to transformed mouse 3T3 cell double minute 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - MGI