Mars1 (methionyl-tRNA synthetase 1) - Rat Genome Database

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Gene: Mars1 (methionyl-tRNA synthetase 1) Rattus norvegicus
Analyze
Symbol: Mars1
Name: methionyl-tRNA synthetase 1
RGD ID: 1305321
Description: Predicted to enable methionine-tRNA ligase activity. Predicted to be involved in several processes, including RNA metabolic process; cellular response to epidermal growth factor stimulus; and cellular response to platelet-derived growth factor stimulus. Part of aminoacyl-tRNA synthetase multienzyme complex. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2U; hereditary spastic paraplegia 70; and trichothiodystrophy. Orthologous to human MARS1 (methionyl-tRNA synthetase 1); PARTICIPATES IN glycine N-methyltransferase deficiency pathway; homocystinuria pathway; hypermethioninemia pathway; INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC299851; Mars; methionine--tRNA ligase, cytoplasmic; methionine-tRNA synthetase; methionyl-tRNA synthetase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,006,456 - 65,023,880 (-)NCBIGRCr8
mRatBN7.2763,121,142 - 63,138,550 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,121,142 - 63,138,495 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx765,010,415 - 65,027,712 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,212,835 - 67,230,132 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,014,183 - 67,031,462 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,585,011 - 70,602,425 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,585,013 - 70,602,310 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0770,759,159 - 70,776,559 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,252,510 - 67,269,807 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,273,245 - 67,290,584 (-)NCBI
Celera760,261,413 - 60,278,690 (-)NCBICelera
Cytogenetic Map7q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1-naphthyl isothiocyanate  (EXP)
1-nitropyrene  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3-chloropropane-1,2-diol  (EXP)
5-fluorouracil  (ISO)
Aflatoxin B2 alpha  (ISO)
antirheumatic drug  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butan-1-ol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
gemcitabine  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lamivudine  (ISO)
lead diacetate  (EXP)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
ochratoxin A  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
piroxicam  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP)
Salinomycin  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
titanium dioxide  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vorinostat  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo Sorting to Dense-Core Vesicles. Topalidou I, etal., PLoS Genet. 2016 May 18;12(5):e1006074. doi: 10.1371/journal.pgen.1006074. eCollection 2016 May.
9. LysRS serves as a key signaling molecule in the immune response by regulating gene expression. Yannay-Cohen N, etal., Mol Cell. 2009 Jun 12;34(5):603-11. doi: 10.1016/j.molcel.2009.05.019.
Additional References at PubMed
PMID:10791971   PMID:11714285   PMID:12060739   PMID:18614015   PMID:19131329   PMID:19289464   PMID:19946888   PMID:20458337   PMID:22424946  


Genomics

Comparative Map Data
Mars1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,006,456 - 65,023,880 (-)NCBIGRCr8
mRatBN7.2763,121,142 - 63,138,550 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,121,142 - 63,138,495 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx765,010,415 - 65,027,712 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,212,835 - 67,230,132 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,014,183 - 67,031,462 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,585,011 - 70,602,425 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,585,013 - 70,602,310 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0770,759,159 - 70,776,559 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,252,510 - 67,269,807 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,273,245 - 67,290,584 (-)NCBI
Celera760,261,413 - 60,278,690 (-)NCBICelera
Cytogenetic Map7q22NCBI
MARS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,488,068 - 57,516,652 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1257,475,445 - 57,517,569 (+)EnsemblGRCh38hg38GRCh38
GRCh371257,881,851 - 57,910,435 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361256,168,118 - 56,196,700 (+)NCBINCBI36Build 36hg18NCBI36
Build 341256,168,117 - 56,196,700NCBI
Celera1257,535,658 - 57,566,266 (+)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1254,919,857 - 54,948,436 (+)NCBIHuRef
CHM1_11257,849,852 - 57,878,293 (+)NCBICHM1_1
T2T-CHM13v2.01257,456,360 - 57,484,880 (+)NCBIT2T-CHM13v2.0
Mars1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,132,090 - 127,147,655 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,132,090 - 127,147,655 (-)EnsemblGRCm39 Ensembl
GRCm3810127,296,221 - 127,311,786 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,296,221 - 127,311,786 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710126,733,277 - 126,748,842 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610126,699,175 - 126,714,588 (-)NCBIMGSCv36mm8
Celera10129,688,532 - 129,704,394 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.5NCBI
Mars1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554585,215,853 - 5,233,037 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554585,215,853 - 5,233,037 (+)NCBIChiLan1.0ChiLan1.0
MARS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21036,824,464 - 36,863,833 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11236,821,235 - 36,848,909 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01231,410,231 - 31,438,015 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11231,668,634 - 31,693,988 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1231,668,708 - 31,693,839 (-)Ensemblpanpan1.1panPan2
MARS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,588,503 - 1,606,752 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,588,875 - 1,606,750 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,651,747 - 1,669,984 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0101,597,550 - 1,615,816 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl101,597,894 - 1,615,814 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1101,575,609 - 1,593,831 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0101,817,102 - 1,835,520 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,942,478 - 1,960,709 (+)NCBIUU_Cfam_GSD_1.0
Mars1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,205,154 - 57,225,738 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,644,457 - 1,665,086 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,644,457 - 1,665,081 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MARS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl522,752,374 - 22,785,501 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1522,752,405 - 22,785,509 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MARS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11153,397,380 - 53,410,596 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037192,539,409 - 192,566,135 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mars1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480210,443,223 - 10,460,971 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480210,443,216 - 10,460,971 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mars1
26 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:17
Count of miRNA genes:16
Interacting mature miRNAs:17
Transcripts:ENSRNOT00000035486
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat

Markers in Region
RH128750  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2763,121,211 - 63,121,513 (+)MAPPERmRatBN7.2
Rnor_6.0770,585,083 - 70,585,384NCBIRnor6.0
Rnor_5.0770,759,229 - 70,759,530UniSTSRnor5.0
RGSC_v3.4767,252,580 - 67,252,881UniSTSRGSC3.4
Celera760,261,483 - 60,261,784UniSTS
Cytogenetic Map7q22UniSTS
RH141558  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2763,120,873 - 63,121,092 (+)MAPPERmRatBN7.2
Rnor_6.0770,584,745 - 70,584,963NCBIRnor6.0
Rnor_5.0770,758,891 - 70,759,109UniSTSRnor5.0
RGSC_v3.4767,252,242 - 67,252,460UniSTSRGSC3.4
Celera760,261,145 - 60,261,363UniSTS
Cytogenetic Map7q22UniSTS
PMC150726P4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2763,120,763 - 63,121,067 (+)MAPPERmRatBN7.2
Rnor_6.0770,584,635 - 70,584,938NCBIRnor6.0
Rnor_5.0770,758,781 - 70,759,084UniSTSRnor5.0
RGSC_v3.4767,252,132 - 67,252,435UniSTSRGSC3.4
Celera760,261,035 - 60,261,338UniSTS
Cytogenetic Map7q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000035486   ⟹   ENSRNOP00000034945
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl763,121,144 - 63,138,454 (-)Ensembl
Rnor_6.0 Ensembl770,585,013 - 70,602,310 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106342   ⟹   ENSRNOP00000078365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl763,121,144 - 63,138,454 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107571   ⟹   ENSRNOP00000089312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl763,121,142 - 63,138,495 (-)Ensembl
RefSeq Acc Id: NM_001127659   ⟹   NP_001121131
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,006,456 - 65,023,753 (-)NCBI
mRatBN7.2763,121,142 - 63,138,439 (-)NCBI
Rnor_6.0770,585,013 - 70,602,310 (-)NCBI
Rnor_5.0770,759,159 - 70,776,559 (-)NCBI
RGSC_v3.4767,252,510 - 67,269,807 (-)RGD
Celera760,261,413 - 60,278,690 (-)RGD
Sequence:
RefSeq Acc Id: XM_006241451   ⟹   XP_006241513
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,006,456 - 65,023,880 (-)NCBI
mRatBN7.2763,121,142 - 63,138,550 (-)NCBI
Rnor_6.0770,585,011 - 70,602,425 (-)NCBI
Rnor_5.0770,759,159 - 70,776,559 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039078755   ⟹   XP_038934683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,006,456 - 65,019,470 (-)NCBI
mRatBN7.2763,121,142 - 63,135,052 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001121131 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241513 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934683 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM16472 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000034945
  ENSRNOP00000034945.4
  ENSRNOP00000078365
  ENSRNOP00000078365.1
  ENSRNOP00000089312.1
RefSeq Acc Id: NP_001121131   ⟸   NM_001127659
- UniProtKB: D3Z941 (UniProtKB/TrEMBL),   A0A8I6A8E9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241513   ⟸   XM_006241451
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZKR4 (UniProtKB/TrEMBL),   A6HQU9 (UniProtKB/TrEMBL),   A0A8I6A8E9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000034945   ⟸   ENSRNOT00000035486
RefSeq Acc Id: XP_038934683   ⟸   XM_039078755
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000078365   ⟸   ENSRNOT00000106342
RefSeq Acc Id: ENSRNOP00000089312   ⟸   ENSRNOT00000107571
Protein Domains
GST C-terminal   WHEP-TRS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z941-F1-model_v2 AlphaFold D3Z941 1-902 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695257
Promoter ID:EPDNEW_R5782
Type:initiation region
Name:Mars_1
Description:methionyl-tRNA synthetase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0770,602,320 - 70,602,380EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305321 AgrOrtholog
BioCyc Gene G2FUF-33753 BioCyc
BioCyc Pathway TRNA-CHARGING-PWY [tRNA charging] BioCyc
BioCyc Pathway Image TRNA-CHARGING-PWY BioCyc
Ensembl Genes ENSRNOG00000025459 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035486 ENTREZGENE
  ENSRNOT00000035486.5 UniProtKB/TrEMBL
  ENSRNOT00000106342.1 UniProtKB/TrEMBL
  ENSRNOT00000107571.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1050.10 UniProtKB/TrEMBL
  2.20.28.20 UniProtKB/TrEMBL
  3.40.50.620 UniProtKB/TrEMBL
  Glutaredoxin UniProtKB/TrEMBL
  S15/NS1, RNA-binding UniProtKB/TrEMBL
InterPro aa-tRNA-synt_I UniProtKB/TrEMBL
  aa-tRNA-synth_I_CS UniProtKB/TrEMBL
  Anticodon_Met UniProtKB/TrEMBL
  Glutathione-S-Trfase_C-like UniProtKB/TrEMBL
  Glutathione-S-Trfase_C_sf UniProtKB/TrEMBL
  GST_C UniProtKB/TrEMBL
  MARS_N UniProtKB/TrEMBL
  Met-tRNA_synth_1 UniProtKB/TrEMBL
  MetRS_core UniProtKB/TrEMBL
  MetRS_Zn UniProtKB/TrEMBL
  Rossmann-like_a/b/a_fold UniProtKB/TrEMBL
  S15_NS1_RNA-bd UniProtKB/TrEMBL
  tRNA-synt_met_N UniProtKB/TrEMBL
  tRNAsynth_1a_anticodon-bd UniProtKB/TrEMBL
  WHEP-TRS UniProtKB/TrEMBL
KEGG Report rno:299851 UniProtKB/TrEMBL
NCBI Gene 299851 ENTREZGENE
PANTHER METHIONINE--TRNA LIGASE, CYTOPLASMIC UniProtKB/TrEMBL
  PTHR45765 UniProtKB/TrEMBL
Pfam Anticodon_3 UniProtKB/TrEMBL
  GST_C UniProtKB/TrEMBL
  GST_N_5 UniProtKB/TrEMBL
  tRNA-synt_1g UniProtKB/TrEMBL
  WHEP-TRS UniProtKB/TrEMBL
PhenoGen Mars1 PhenoGen
PRINTS TRNASYNTHMET UniProtKB/TrEMBL
PROSITE AA_TRNA_LIGASE_I UniProtKB/TrEMBL
  GST_CTER UniProtKB/TrEMBL
  WHEP_TRS_1 UniProtKB/TrEMBL
  WHEP_TRS_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000025459 RatGTEx
SMART WHEP-TRS UniProtKB/TrEMBL
Superfamily-SCOP GST_C_like UniProtKB/TrEMBL
  Nucleotidylyl transferase UniProtKB/TrEMBL
  S15/NS1_bind UniProtKB/TrEMBL
  SSF57770 UniProtKB/TrEMBL
  tRNAsyn_1a_bind UniProtKB/TrEMBL
UniProt A0A8I5ZKR4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A8E9 ENTREZGENE, UniProtKB/TrEMBL
  A6HQU9 ENTREZGENE, UniProtKB/TrEMBL
  D3Z941 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-08 Mars1  methionyl-tRNA synthetase 1  Mars  methionyl-tRNA synthetase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-05 Mars  methionyl-tRNA synthetase  Mars  methionine-tRNA synthetase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Mars  methionine-tRNA synthetase   Mars_predicted  methionine-tRNA synthetase (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mars_predicted  methionine-tRNA synthetase (predicted)      Symbol and Name status set to approved 70820 APPROVED