Arhgap9 (Rho GTPase activating protein 9) - Rat Genome Database

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Gene: Arhgap9 (Rho GTPase activating protein 9) Rattus norvegicus
Analyze
Symbol: Arhgap9
Name: Rho GTPase activating protein 9
RGD ID: 1305342
Description: Predicted to enable GTPase activator activity and phosphatidylinositol-3,4,5-trisphosphate binding activity. Predicted to be involved in signal transduction. Predicted to be active in cytoplasm. Orthologous to human ARHGAP9 (Rho GTPase activating protein 9); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362893; MGC125000; rho GTPase-activating protein 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,034,023 - 65,042,336 (+)NCBIGRCr8
mRatBN7.2763,148,573 - 63,157,025 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,148,900 - 63,157,524 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx765,038,168 - 65,046,289 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,240,592 - 67,248,713 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,041,922 - 67,050,041 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,612,650 - 70,620,900 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,612,103 - 70,620,890 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0770,786,981 - 70,795,179 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,280,267 - 67,288,390 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,302,835 - 67,309,117 (+)NCBI
Celera760,289,141 - 60,297,261 (+)NCBICelera
Cytogenetic Map7q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11396949   PMID:12477932   PMID:17339315  


Genomics

Comparative Map Data
Arhgap9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,034,023 - 65,042,336 (+)NCBIGRCr8
mRatBN7.2763,148,573 - 63,157,025 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,148,900 - 63,157,524 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx765,038,168 - 65,046,289 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,240,592 - 67,248,713 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,041,922 - 67,050,041 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,612,650 - 70,620,900 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,612,103 - 70,620,890 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0770,786,981 - 70,795,179 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,280,267 - 67,288,390 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,302,835 - 67,309,117 (+)NCBI
Celera760,289,141 - 60,297,261 (+)NCBICelera
Cytogenetic Map7q22NCBI
ARHGAP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,472,269 - 57,488,824 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1257,472,264 - 57,488,814 (-)EnsemblGRCh38hg38GRCh38
GRCh371257,866,052 - 57,882,607 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361256,152,305 - 56,159,900 (-)NCBINCBI36Build 36hg18NCBI36
Build 341256,152,313 - 56,168,864NCBI
Celera1257,520,025 - 57,527,620 (-)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1254,903,912 - 54,911,506 (-)NCBIHuRef
CHM1_11257,834,151 - 57,841,746 (-)NCBICHM1_1
T2T-CHM13v2.01257,440,558 - 57,457,116 (-)NCBIT2T-CHM13v2.0
Arhgap9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,157,829 - 127,165,816 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,157,833 - 127,165,812 (+)EnsemblGRCm39 Ensembl
GRCm3810127,321,913 - 127,329,947 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,321,964 - 127,329,943 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710126,760,783 - 126,766,999 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610126,760,783 - 126,766,999 (+)NCBIMGSCv36mm8
Celera10129,716,377 - 129,722,546 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.5NCBI
Arhgap9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554585,193,816 - 5,199,067 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554585,193,708 - 5,201,625 (-)NCBIChiLan1.0ChiLan1.0
ARHGAP9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21036,855,544 - 36,868,021 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11236,849,019 - 36,864,789 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01231,445,732 - 31,453,763 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11231,701,480 - 31,710,064 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1231,693,309 - 31,710,064 (+)Ensemblpanpan1.1panPan2
ARHGAP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,576,114 - 1,583,611 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,639,366 - 1,652,757 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0101,585,166 - 1,598,560 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl101,585,194 - 1,592,651 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1101,563,236 - 1,576,619 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0101,804,725 - 1,818,112 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,930,089 - 1,943,488 (-)NCBIUU_Cfam_GSD_1.0
Arhgap9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,225,877 - 57,240,459 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,630,029 - 1,638,571 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,629,814 - 1,637,535 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGAP9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl522,747,339 - 22,762,049 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1522,747,346 - 22,762,179 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,812,589 - 24,835,154 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARHGAP9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11153,384,335 - 53,398,445 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1153,384,449 - 53,396,083 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037192,565,217 - 192,582,694 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arhgap9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480210,475,609 - 10,483,043 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480210,461,014 - 10,483,148 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arhgap9
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:451
Count of miRNA genes:194
Interacting mature miRNAs:218
Transcripts:ENSRNOT00000035382, ENSRNOT00000057833
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat

Markers in Region
AU043488  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2763,156,604 - 63,156,716 (+)MAPPERmRatBN7.2
Rnor_6.0770,620,473 - 70,620,584NCBIRnor6.0
Rnor_5.0770,794,752 - 70,794,863UniSTSRnor5.0
RGSC_v3.4767,287,970 - 67,288,081UniSTSRGSC3.4
Celera760,296,841 - 60,296,952UniSTS
Cytogenetic Map7q22UniSTS
RH130356  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2763,156,736 - 63,156,954 (+)MAPPERmRatBN7.2
Rnor_6.0770,620,605 - 70,620,822NCBIRnor6.0
Rnor_5.0770,794,884 - 70,795,101UniSTSRnor5.0
RGSC_v3.4767,288,102 - 67,288,319UniSTSRGSC3.4
Celera760,296,973 - 60,297,190UniSTS
Cytogenetic Map7q22UniSTS
UniSTS:465478  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2763,157,099 - 63,157,502 (+)MAPPERmRatBN7.2
Rnor_6.0770,620,968 - 70,621,370NCBIRnor6.0
Rnor_5.0770,795,247 - 70,795,649UniSTSRnor5.0
RGSC_v3.4767,288,465 - 67,288,867UniSTSRGSC3.4
Celera760,297,336 - 60,297,738UniSTS
Cytogenetic Map7q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 24 16 19 16 6 10
Low 1 35 33 25 25 8 11 72 29 41 1 8
Below cutoff 8 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001080789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001414956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC114111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000035382   ⟹   ENSRNOP00000036104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl763,148,900 - 63,157,524 (+)Ensembl
Rnor_6.0 Ensembl770,614,617 - 70,620,890 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000057833   ⟹   ENSRNOP00000054641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl763,148,900 - 63,157,093 (+)Ensembl
Rnor_6.0 Ensembl770,612,103 - 70,620,789 (+)Ensembl
RefSeq Acc Id: NM_001012198   ⟹   NP_001012198
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,036,023 - 65,042,336 (+)NCBI
mRatBN7.2763,150,712 - 63,157,025 (+)NCBI
Rnor_6.0770,614,609 - 70,620,893 (+)NCBI
Rnor_5.0770,786,981 - 70,795,179 (+)NCBI
RGSC_v3.4767,280,267 - 67,288,390 (+)RGD
Celera760,290,977 - 60,297,261 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001080789   ⟹   NP_001074258
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,034,144 - 65,042,336 (+)NCBI
mRatBN7.2763,148,831 - 63,157,025 (+)NCBI
Rnor_6.0770,612,770 - 70,620,860 (+)NCBI
Rnor_5.0770,786,981 - 70,795,179 (+)NCBI
RGSC_v3.4767,280,267 - 67,288,390 (+)RGD
Celera760,289,141 - 60,297,228 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001414956   ⟹   NP_001401885
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,036,023 - 65,042,336 (+)NCBI
mRatBN7.2763,150,712 - 63,157,025 (+)NCBI
RefSeq Acc Id: XM_006241464   ⟹   XP_006241526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,034,119 - 65,042,303 (+)NCBI
mRatBN7.2763,148,573 - 63,156,992 (+)NCBI
Rnor_6.0770,612,715 - 70,620,860 (+)NCBI
Rnor_5.0770,786,981 - 70,795,179 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006241465   ⟹   XP_006241527
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,034,023 - 65,042,303 (+)NCBI
mRatBN7.2763,148,710 - 63,156,992 (+)NCBI
Rnor_6.0770,612,717 - 70,620,860 (+)NCBI
Rnor_5.0770,786,981 - 70,795,179 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006241466   ⟹   XP_006241528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,034,023 - 65,042,303 (+)NCBI
mRatBN7.2763,148,710 - 63,156,992 (+)NCBI
Rnor_6.0770,612,702 - 70,620,860 (+)NCBI
Rnor_5.0770,786,981 - 70,795,179 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006241467   ⟹   XP_006241529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,034,023 - 65,041,225 (+)NCBI
mRatBN7.2763,148,710 - 63,155,914 (+)NCBI
Rnor_6.0770,612,650 - 70,619,882 (+)NCBI
Rnor_5.0770,786,981 - 70,795,179 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594927   ⟹   XP_017450416
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,035,974 - 65,042,303 (+)NCBI
mRatBN7.2763,150,663 - 63,156,994 (+)NCBI
Rnor_6.0770,614,550 - 70,620,900 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594929   ⟹   XP_017450418
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,037,410 - 65,042,303 (+)NCBI
mRatBN7.2763,152,099 - 63,156,994 (+)NCBI
Rnor_6.0770,616,010 - 70,620,900 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039079492   ⟹   XP_038935420
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,036,011 - 65,042,303 (+)NCBI
mRatBN7.2763,150,713 - 63,156,994 (+)NCBI
RefSeq Acc Id: XM_039079495   ⟹   XP_038935423
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,036,009 - 65,042,303 (+)NCBI
mRatBN7.2763,150,708 - 63,156,994 (+)NCBI
RefSeq Acc Id: XM_063263803   ⟹   XP_063119873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,035,989 - 65,042,303 (+)NCBI
RefSeq Acc Id: XM_063263804   ⟹   XP_063119874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,036,586 - 65,042,303 (+)NCBI
RefSeq Acc Id: XM_063263805   ⟹   XP_063119875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,036,019 - 65,042,303 (+)NCBI
RefSeq Acc Id: NP_001074258   ⟸   NM_001080789
- Peptide Label: isoform 1
- UniProtKB: Q32PX8 (UniProtKB/TrEMBL),   F7FH17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001012198   ⟸   NM_001012198
- Peptide Label: isoform 2
- UniProtKB: Q6AXS7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241529   ⟸   XM_006241467
- Peptide Label: isoform X4
- UniProtKB: F7FH17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241528   ⟸   XM_006241466
- Peptide Label: isoform X3
- UniProtKB: F7FH17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241526   ⟸   XM_006241464
- Peptide Label: isoform X1
- UniProtKB: F7EUE3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241527   ⟸   XM_006241465
- Peptide Label: isoform X2
- UniProtKB: F7EUE3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450416   ⟸   XM_017594927
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017450418   ⟸   XM_017594929
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSRNOP00000054641   ⟸   ENSRNOT00000057833
RefSeq Acc Id: ENSRNOP00000036104   ⟸   ENSRNOT00000035382
RefSeq Acc Id: XP_038935423   ⟸   XM_039079495
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038935420   ⟸   XM_039079492
- Peptide Label: isoform X6
RefSeq Acc Id: NP_001401885   ⟸   NM_001414956
- Peptide Label: isoform 3
RefSeq Acc Id: XP_063119873   ⟸   XM_063263803
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063119875   ⟸   XM_063263805
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063119874   ⟸   XM_063263804
- Peptide Label: isoform X5
Protein Domains
PH   Rho-GAP   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7FH17-F1-model_v2 AlphaFold F7FH17 1-639 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695258
Promoter ID:EPDNEW_R5783
Type:single initiation site
Name:Arhgap9_1
Description:Rho GTPase activating protein 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0770,614,576 - 70,614,636EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305342 AgrOrtholog
BioCyc Gene G2FUF-33751 BioCyc
Ensembl Genes ENSRNOG00000006946 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035382 ENTREZGENE
  ENSRNOT00000035382.6 UniProtKB/TrEMBL
  ENSRNOT00000057833 ENTREZGENE
  ENSRNOT00000057833.5 UniProtKB/TrEMBL
Gene3D-CATH 1.10.555.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7097179 IMAGE-MGC_LOAD
  IMAGE:7378387 IMAGE-MGC_LOAD
InterPro PH_type UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
  SH3-like_dom UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
KEGG Report rno:362893 UniProtKB/TrEMBL
MGC_CLONE MGC:125000 IMAGE-MGC_LOAD
  MGC:94763 IMAGE-MGC_LOAD
NCBI Gene 362893 ENTREZGENE
PANTHER RHO GTPASE-ACTIVATING PROTEIN 9 UniProtKB/TrEMBL
  RHO/RAC/CDC GTPASE-ACTIVATING PROTEIN UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
PhenoGen Arhgap9 PhenoGen
PROSITE PH_DOMAIN UniProtKB/TrEMBL
  RHOGAP UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006946 RatGTEx
SMART RhoGAP UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  Rho_GAP UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
UniProt F7EUE3 ENTREZGENE, UniProtKB/TrEMBL
  F7FH17 ENTREZGENE, UniProtKB/TrEMBL
  Q32PX8 ENTREZGENE, UniProtKB/TrEMBL
  Q6AXS7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-05-01 Arhgap9  Rho GTPase activating protein 9  Arhgap9_predicted  Arhgap9_predicted protein  Data merged from RGD:1563184 737654 APPROVED
2006-02-09 Arhgap9_predicted  Arhgap9_predicted protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-12-06 Arhgap9  Rho GTPase activating protein 9  Arhgap9_predicted  Rho GTPase activating protein 9 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Arhgap9_predicted  Rho GTPase activating protein 9 (predicted)      Symbol and Name status set to approved 70820 APPROVED