Cnot2 (CCR4-NOT transcription complex, subunit 2)

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Gene: Cnot2 (CCR4-NOT transcription complex, subunit 2) Rattus norvegicus

Analyze

Symbol:

Cnot2

Name:

CCR4-NOT transcription complex, subunit 2

RGD ID:

1311672

Description:

Is predicted to contribute to poly(A)-specific ribonuclease activity. Predicted to be involved in several processes, including negative regulation of intracellular estrogen receptor signaling pathway; positive regulation of cytoplasmic mRNA processing body assembly; and trophectodermal cell differentiation. Predicted to localize to several cellular components, including CCR4-NOT complex; cytosol; and nucleoplasm. Orthologous to human CNOT2 (CCR4-NOT transcription complex subunit 2); PARTICIPATES IN microRNA pathway; RNA degradation pathway; INTERACTS WITH 2,6-dinitrotoluene; bisphenol A; Brodifacoum.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

CCR4-NOT transcription complex subunit 2; LOC299805

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CNOT2 (CCR4-NOT transcription complex subunit 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Cnot2 (CCR4-NOT transcription complex, subunit 2)	HGNC	NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Cnot2 (CCR4-NOT transcription complex subunit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CNOT2 (CCR4-NOT transcription complex subunit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CNOT2 (CCR4-NOT transcription complex subunit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cnot2 (CCR4-NOT transcription complex subunit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CNOT2 (CCR4-NOT transcription complex subunit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	CNOT2 (CCR4-NOT transcription complex subunit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cnot2 (CCR4-NOT transcription complex subunit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CNOT2 (CCR4-NOT transcription complex subunit 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Cnot2 (CCR4-NOT transcription complex, subunit 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	cnot2 (CCR4-NOT transcription complex, subunit 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	CDC36	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG15262	Alliance	DIOPT (Hieranoid\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Rga	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	ntl-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	52,130,444 - 52,222,338 (-)	NCBI
Rnor_6.0 Ensembl	7	59,527,124 - 59,587,385 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	7	59,526,105 - 59,617,307 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	7	59,537,579 - 59,628,786 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	55,823,982 - 55,880,812 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	7	55,844,724 - 55,901,542 (-)	NCBI
Celera	7	48,914,667 - 48,971,519 (-)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Intellectual Developmental Disorder with Nasal Speech, Dysmorphic Facies, and Variable Skeletal Anomalies (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

1,3-dichloropropan-2-ol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3-phenylprop-2-enal (ISO)

4,4'-diaminodiphenylmethane (ISO)

4-phenylbutyric acid (ISO)

aflatoxin B1 (ISO)

Aroclor 1254 (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

Brodifacoum (EXP)

butanal (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

enzyme inhibitor (ISO)

folic acid (ISO)

formaldehyde (ISO)

genistein (EXP)

gentamycin (EXP)

hexadecanoic acid (ISO)

hydrogen peroxide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methyl methanesulfonate (ISO)

ochratoxin A (ISO)

oxaliplatin (EXP)

potassium chromate (ISO)

sodium arsenate (ISO)

topotecan (EXP)

trichostatin A (ISO)

troglitazone (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

negative regulation of intracellular estrogen receptor signaling pathway (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

nuclear-transcribed mRNA poly(A) tail shortening (IBA)

positive regulation of cytoplasmic mRNA processing body assembly (ISO)

regulation of stem cell population maintenance (IBA,ISO)

RNA phosphodiester bond hydrolysis, exonucleolytic (IEA)

trophectodermal cell differentiation (ISO)

Cellular Component

CCR4-NOT complex (ISO)

CCR4-NOT core complex (IBA)

cellular_component (ND)

cytoplasm (ISO)

cytosol (IEA,ISO)

nucleoplasm (IEA,ISO)

P-body (IBA)

plasma membrane (IEA,ISO)

Molecular Function

molecular_function (ND)

poly(A)-specific ribonuclease activity (ISO)

protein binding (ISO)

RNA polymerase II transcription corepressor binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

microRNA pathway (ISO)

RNA degradation pathway (IEA)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	Pipeline to import KEGG annotations from KEGG into RGD
4.	RGD automated data pipeline
5.	RGD automated import pipeline for gene-chemical interactions
6.	RGD comprehensive gene curation
7.	Wahle E and Winkler GS, Biochim Biophys Acta. 2013 Jun-Jul;1829(6-7):561-70. doi: 10.1016/j.bbagrm.2013.01.003. Epub 2013 Jan 19.

Additional References at PubMed

PMID:12477932	PMID:14707134	PMID:16712523	PMID:16778766	PMID:19558367	PMID:19946888	PMID:21299754	PMID:22367759

Genomics

Comparative Map Data

Cnot2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	52,130,444 - 52,222,338 (-)	NCBI
Rnor_6.0 Ensembl	7	59,527,124 - 59,587,385 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	7	59,526,105 - 59,617,307 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	7	59,537,579 - 59,628,786 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	55,823,982 - 55,880,812 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	7	55,844,724 - 55,901,542 (-)	NCBI
Celera	7	48,914,667 - 48,971,519 (-)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

CNOT2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	12	70,243,002 - 70,354,993 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	12	70,242,994 - 70,354,993 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	12	70,242,994 - 70,355,257 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	12	70,242,993 - 70,354,993 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	12	70,636,798 - 70,748,773 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	68,923,044 - 69,035,040 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	12	68,923,488 - 69,033,960	NCBI
Celera	12	70,300,448 - 70,412,447 (+)	NCBI
Cytogenetic Map	12	q15	NCBI
HuRef	12	67,686,934 - 67,798,932 (+)	NCBI		HuRef
CHM1_1	12	70,606,077 - 70,718,081 (+)	NCBI		CHM1_1

Cnot2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	116,321,065 - 116,418,891 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	10	116,321,066 - 116,417,416 (-)	Ensembl
GRCm38	10	116,485,160 - 116,581,900 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	116,485,161 - 116,581,511 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	115,922,217 - 116,018,567 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	10	115,889,276 - 115,985,621 (-)	NCBI			mm8
Celera	10	118,426,741 - 118,523,052 (-)	NCBI		Celera
Cytogenetic Map	10	D2	NCBI

Cnot2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	10,451,414 - 10,547,229 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	10,451,414 - 10,547,229 (+)	NCBI	ChiLan1.0	ChiLan1.0

CNOT2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	12	70,520,722 - 70,633,149 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	70,520,722 - 70,633,149 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	12	67,753,703 - 67,865,375 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

CNOT2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	10	12,009,762 - 12,172,427 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	10	12,057,269 - 12,174,405 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Cnot2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936545	7,938,934 - 8,040,409 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CNOT2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	34,426,394 - 34,549,313 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	34,470,911 - 34,548,968 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	37,132,108 - 37,207,783 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CNOT2
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	65,823,294 - 65,932,588 (+)	NCBI
ChlSab1.1 Ensembl	11	65,861,353 - 65,934,042 (+)	Ensembl

Cnot2
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624750	27,433,671 - 27,529,545 (-)	NCBI

Position Markers

RH144030

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	7	59,533,922 - 59,534,085	NCBI	Rnor6.0
Rnor_5.0	7	59,545,396 - 59,545,559	UniSTS	Rnor5.0
RGSC_v3.4	7	55,827,349 - 55,827,512	UniSTS	RGSC3.4
Celera	7	48,918,034 - 48,918,197	UniSTS
RH 3.4 Map	7	481.5	UniSTS
Cytogenetic Map	7	q22	UniSTS

RH140338

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	7	59,545,272 - 59,545,422	NCBI	Rnor6.0
Rnor_5.0	7	59,556,746 - 59,556,896	UniSTS	Rnor5.0
RGSC_v3.4	7	55,838,699 - 55,838,849	UniSTS	RGSC3.4
Celera	7	48,929,384 - 48,929,534	UniSTS
RH 3.4 Map	7	503.6	UniSTS
Cytogenetic Map	7	q22	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	55072862	123602998	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	55072862	123602998	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	55072862	123602998	Rat
2317059	Aia15	Adjuvant induced arthritis QTL 15	2.46		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	55072862	69399731	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	40872682	85872682	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	54259512	99259512	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	22168412	67168412	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	50704769	128085642	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	45301573	90301573	Rat
634326	Hc3	Hypercalciuria QTL 3	2.1		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	7	50252103	95252103	Rat
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	28204653	73204653	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	35867729	93155402	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	35867729	61047824	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	51252005	111589099	Rat
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	51251919	145729302	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	51251919	118477612	Rat
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	50793818	95793818	Rat
10059605	Kidm47	Kidney mass QTL 47	2.91	0.05	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	54534996	73293934	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	35867729	80867729	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	25365633	93155402	Rat
1354639	Spl5	Serum phospholipid level QTL 5	3.9		blood LDL phospholipid amount (VT:0010505)	blood low density lipoprotein phospholipid level (CMO:0001568)	7	25365633	60317612	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	32035053	77035053	Rat
1641885	Alcrsp9	Alcohol response QTL 9			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	7	31381529	76381529	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	12687850	67801690	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	48118835	128611831	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	53200344	98200344	Rat
61439	Cia8	Collagen induced arthritis QTL 8	5.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	32572942	77572942	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	12328467	67193263	Rat
2303629	Vencon3	Ventilatory control QTL 3	7.25		respiration trait (VT:0001943)	respiration rate (CMO:0000289)	7	47895099	63372754	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	40872682	85872682	Rat
2293678	Bss24	Bone structure and strength QTL 24	6.71	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	7	55495689	100495689	Rat
10755451	Coatc11	Coat color QTL 11		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	24731465	69731465	Rat
2293667	Bss42	Bone structure and strength QTL 42	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	7	55495689	100495689	Rat
2293696	Bmd32	Bone mineral density QTL 32	5.1	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	7	55495689	100495689	Rat
2300178	Bmd54	Bone mineral density QTL 54	5.3	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	7	55495689	100495689	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	2920071	124838025	Rat
2293644	Bmd29	Bone mineral density QTL 29	5.4	0.0001	femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	7	55495689	100495689	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	33044449	71352127	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	38547706	83547706	Rat
2293685	Bmd21	Bone mineral density QTL 21	4.2	0.0003	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	7	55495689	100495689	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	12328467	106995532	Rat
2293707	Bss32	Bone structure and strength QTL 32	7.64	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	55495689	100495689	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	157
Count of miRNA genes:	124
Interacting mature miRNAs:	134
Transcripts:	ENSRNOT00000066396
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	10	74	35	41	11	8
Low								1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005486575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC136025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC136231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000066396 ⟹ ENSRNOP00000061277

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	59,530,568 - 59,587,385 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000085836 ⟹ ENSRNOP00000075690

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	59,532,641 - 59,547,174 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000091427 ⟹ ENSRNOP00000074023

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	59,527,124 - 59,587,382 (-)	Ensembl

RefSeq Acc Id:

NM_001011988 ⟹ NP_001011988

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,134,895 - 52,191,729 (-)	NCBI
Rnor_6.0	7	59,530,555 - 59,587,385 (-)	NCBI
Rnor_5.0	7	59,537,579 - 59,628,786 (-)	NCBI
RGSC_v3.4	7	55,823,982 - 55,880,812 (-)	RGD
Celera	7	48,914,667 - 48,971,519 (-)	RGD

Sequence:

show sequence

TCATGCGAGGGAGAACTGGTGGGCGGTCCTTCCTGTGACACGACCCTTGAGTGACAGTTCTATT
TGATTGCCTCCAGTACTGTGAGGAAAGGACACGACTCTATGGTGAGGACTGATGGACATACATT
ATCTGAGAAAAGAAACTACCAGGTGACAAACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTA
GAGGGGGTGGACAGCGACTACCATGATGAAAACATGTACTACAGCCAGTCTTCTATGTTCCCAC
ATCGGTCAGAGAAAGATGTGCACTAGGCCTTCCAATGAGGGGGATGAGCAACAATACCCCTCAG
TTAAATCGCAGCTTATCACAAGGCACTCAGTTACCGAGCCACGTCACGCCAACAACAGGGGTAC
CAACAATGTCACTTCACACGCCTCCATCTCCAAGCAGGGGTATTTTGCCTATGAATCCTAGGAA
TATGATGAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCCTAGCAGGACAAATAGCATGAGC
AGTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCAGCAGC
CTTCTCGACAGCCTTTTACTGTGAACAGTATGTCTGGATTTGGAATGAACAGGAATCAGGCATT
TGGAATGAATAACTCCTTATCAAGTAACATTTTTAATGGAACAGATGGCAGTGAAAATGTGACA
GGATTGGACCTTTCAGATTTCCCAGCATTAGCAGACCGGAATAGAAGGGAAGGAAGTGGCAACC
CAACTCCATTAATAAACCCCTTGGCTGGAAGAGCCCCTTACGTTGGAATGGTAACAAAACCTGC
AAATGAGCAATCCCAGGACTTCTCAATACACAACGAAGATTTCCCAGCACTACCTGGCTCCAGC
TATAAAGACCCAACGTCGAGTAATGACGACAGCAAGTCTAATTTGAGTACATCGGGGAAGACGA
CTTCAAGTACAGATGGGCCCAAATTTCCTGGAGATAAAAGTTCAACAACACAAAACAATAATCA
GCAGAAAAAGGGGATCCAGGTGTTACCTGATGGTCGAGTTACTAACATTCCTCAAGGGATGGTG
ACGGACCAATTTGGAATGATTGGCCTGTTAACATTTATCAGGGCAGCAGAGACAGACCCGGGAA
TGGTACATCTTGCTTTAGGAAGTGACTTAACAACATTAGGCCTCAATCTGAACTCACCCGAAAA
TCTCTACCCCAAATTTGCATCACCCTGGGCTTCTTCACCTTGTCGACCTCAAGATATAGACTTC
CATGTTCCGTCAGAATATTTAACAAACATTCACATTAGGGATAAGCTGGCTGCAATCAAACTTG
GCCGATATGGAGAAGACCTCCTCTTCTATCTCTATTACATGAACGGAGGAGACGTATTACAACT
CTTAGCTGCAGTAGAGCTTTTTAACCGTGATTGGAGATACCACAAGGAGGAGCGGGTATGGATT
ACCAGGGCACCAGGCATGGAGCCAACGATGAAAACCAACACATATGAGCGAGGAACCTACTACT
TCTTTGACTGTCTCAACTGGAGGAAAGTAGCTAAGGAACACTGAGTCGTGAAAACGTTGCTTTC
CGGGACTGGAGAGATGGCTCAACGGTTAAGATCATTGACTGCTCTTCCAGAGGTCCTGAGTTCA
ATTCCCAACAGTCAGCTGATGGCTCACAATGATCTGTAATGGGATCTGATGCCCTCTTCTGGTG
TTGTCTGAAGACAACAACATTGTACTCTTATAAATAAAATAAATCTTTAAAAAATAAAAAAAAA
AAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006241363 ⟹ XP_006241425

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,130,444 - 52,222,326 (-)	NCBI
Rnor_6.0	7	59,526,105 - 59,617,297 (-)	NCBI
Rnor_5.0	7	59,537,579 - 59,628,786 (-)	NCBI

Sequence:

show sequence

AGGTCTTGCTCCCAGCAGCCTCCGCGGTGGATACGTCGCCATCTTGGATCCGCGGGACAAGAAA
ATTCATGCGTACTGTGAGGAAAGGACACGACTCTATGGTGAGGACTGATGGACATACATTATCT
GAGAAAAGAAACTACCAGGTGACAAACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTAGAGG
GGGTGGACAGCGACTACCATGATGAAAACATGTACTACAGCCAGTCTTCTATGTTCCCACATCG
GTCAGAGAAAGATATGCTGGCATCACCATCTACATCAGGTCAGCTGTCTCAATTTGGGGCAAGT
TTATACGGGCAACAAAGTGCACTAGGCCTTCCAATGAGGGGGATGAGCAACAATACCCCTCAGT
TAAATCGCAGCTTATCACAAGGCACTCAGTTACCGAGCCACGTCACGCCAACAACAGGGGTACC
AACAATGTCACTTCACACGCCTCCATCTCCAAGCAGGGGTATTTTGCCTATGAATCCTAGGAAT
ATGATGAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCCTAGCAGGACAAATAGCATGAGCA
GTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCAGCAGCC
TTCTCGACAGCCTTTTACTGTGAACAGTATGTCTGGATTTGGAATGAACAGGAATCAGGCATTT
GGAATGAATAACTCCTTATCAAGTAACATTTTTAATGGAACAGATGGCAGTGAAAATGTGACAG
GATTGGACCTTTCAGATTTCCCAGCATTAGCAGACCGGAATAGAAGGGAAGGAAGTGGCAACCC
AACTCCATTAATAAACCCCTTGGCTGGAAGAGCCCCTTACGTTGGAATGGTAACAAAACCTGCA
AATGAGCAATCCCAGGACTTCTCAATACACAACGAAGATTTCCCAGCACTACCTGGCTCCAGCT
ATAAAGACCCAACGTCGAGTAATGACGACAGCAAGTCTAATTTGAGTACATCGGGGAAGACGAC
TTCAAGTACAGATGGGCCCAAATTTCCTGGAGATAAAAGTTCAACAACACAAAACAATAATCAG
CAGAAAAAGGGGATCCAGGTGTTACCTGATGGTCGAGTTACTAACATTCCTCAAGGGATGGTGA
CGGACCAATTTGGAATGATTGGCCTGTTAACATTTATCAGGGCAGCAGAGACAGACCCGGGAAT
GGTACATCTTGCTTTAGGAAGTGACTTAACAACATTAGGCCTCAATCTGAACTCACCCGAAAAT
CTCTACCCCAAATTTGCATCACCCTGGGCTTCTTCACCTTGTCGACCTCAAGATATAGACTTCC
ATGTTCCGTCAGAATATTTAACAAACATTCACATTAGGGATAAGCTGGCTGCAATCAAACTTGG
CCGATATGGAGAAGACCTCCTCTTCTATCTCTATTACATGAACGGAGGAGACGTATTACAACTC
TTAGCTGCAGTAGAGCTTTTTAACCGTGATTGGAGATACCACAAGGAGGAGCGGGTATGGATTA
CCAGGGCACCAGGCATGGAGCCAACGATGAAAACCAACACATATGAGCGAGGAACCTACTACTT
CTTTGACTGTCTCAACTGGAGGAAAGTAGCTAAGGAGTTCCATCTGGAATATGACAAGTTAGAA
GAGCGGCCTCACCTGCCGTCCACCTTCAACTACAACCCTGCTCAGCAAGCCTTCTGAAAAGACT
CCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAACTGATGTGGCT
CAGGCACCCTGGTTTAATTCCTTGAGGATCTGGCAATTGGCTTACATAAAGGGTCACCATTTGA
GGTCCTGCCTTACCAATTATGTGCTGCCCAACAACTAAATTTGTACTTTGTTTTCTCTAGTTTG
AGCAGGGTCTGAATTTTCTCATTTATTTTCTTTTTGCCAGCAGACAGACTTGGGTCTATAAAGA
CAAGCAAGTACACTGACAGAAGTTACCATTTAGTTTCTTAAATGTAAAAAAAGAAAACCCACAA
AAGACTCAACAAAATTAGACCACAAAATTTGCATTGTTCATTGTAGCACTATTGGTAATAAAAG
AGCAGATGTTTGTGCGTTTTGATGTGGAGATCCTTCTCGTATTTCATTTGGAAAGATGAGCAAG
GTCTGCTTCTTTCTTTTTACTTCCCCTTGTGTTTCTGAAAGGCAGTTTCTCCAGGCTTACTGCA
AGAATATGACTGTAGAGAGATTACCACAGTCTCTGGTGGCTCCAGGGCTGTGTTGTTACTGAGC
TTCATCTTTCCAGAATGAGCAAAACACTGTCCAGTCTTTGTTACGATTTTGTAATAAATGTGTA
CATTTTTTTTAAATTTTGGACATCACATGAATAAAGGTATGTATGTACGAATGTGTATATATTA
TATATATGACATCTATTTTGGAAAATGTTTGCCCTGCTGTACCTCATTTTTAGGAGGTGTGCAT
GGATGCAATATATGAAAATGGGACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGC
ACTAAAGGGCCAGATTTTCAGCAGCCAAGGACATCCATACCCAAGTGAATGTGATGGGGCTTCA
AGACGTGAACTGAGACAATTCACTCTGGCTGTGTGAACAGCAGCGTTTCATAGGAAGAGAAAAA
AGATCAATCTTGTATTTTCTGACCACATAAAGGCTTCTTCTCTTTGTAATAAAGTAGAAAAGCT
CTCCTCA

hide sequence

RefSeq Acc Id:

XM_006241364 ⟹ XP_006241426

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,130,453 - 52,222,326 (-)	NCBI
Rnor_6.0	7	59,526,105 - 59,617,307 (-)	NCBI
Rnor_5.0	7	59,537,579 - 59,628,786 (-)	NCBI

Sequence:

show sequence

CAGAGGGTAAAGGTCTTGCTCCCAGCAGCCTCCGCGGTGGATACGTCGCCATCTTGGATCCGCG
GGACAAGAAAATTCATGCGAGGGAGAACTGGTGGGCGGTCCTTCCTGTGACACGACCCTTGAGT
GACAGTTCTATTTGATTGCCTCCAGTACTGTGAGGAAAGGACACGACTCTATGGTGAGGACTGA
TGGACATACATTATCTGAGAAAAGAAACTACCAGGTGACAAACAGCATGTTTGGTGCTTCAAGA
AAGAAGTTTGTAGAGGGGGTGGACAGCGACTACCATGATGAAAACATGTACTACAGCCAGTCTT
CTATGTTCCCACATCGGTCAGAGAAAGATATGCTGGCATCACCATCTACATCAGGTCAGCTGTC
TCAATTTGGGGCAAGTTTATACGGGCAACAAAGTGCACTAGGCCTTCCAATGAGGGGGATGAGC
AACAATACCCCTCAGTTAAATCGCAGCTTATCACAAGGCACTCAGTTACCGAGCCACGTCACGC
CAACAACAGGGGTACCAACAATGTCACTTCACACGCCTCCATCTCCAAGCAGGGGTATTTTGCC
TATGAATCCTAGGAATATGATGAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCCTAGCAGG
ACAAATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTA
TGCCAAAGCAGCAGCCTTCTCGACAGCCTTTTACTGTGAACAGTATGTCTGGATTTGGAATGAA
CAGGAATCAGGCATTTGGAATGAATAACTCCTTATCAAGTAACATTTTTAATGGAACAGATGGC
AGTGAAAATGTGACAGGATTGGACCTTTCAGATTTCCCAGCATTAGCAGACCGGAATAGAAGGG
AAGGAAGTGGCAACCCAACTCCATTAATAAACCCCTTGGCTGGAAGAGCCCCTTACGTTGGAAT
GGTAACAAAACCTGCAAATGAGCAATCCCAGGACTTCTCAATACACAACGAAGATTTCCCAGCA
CTACCTGGCTCCAGCTATAAAGACCCAACGTCGAGTAATGACGACAGCAAGTCTAATTTGAGTA
CATCGGGGAAGACGACTTCAAGTACAGATGGGCCCAAATTTCCTGGAGATAAAAGTTCAACAAC
ACAAAACAATAATCAGCAGAAAAAGGGGATCCAGGTGTTACCTGATGGTCGAGTTACTAACATT
CCTCAAGGGATGGTGACGGACCAATTTGGAATGATTGGCCTGTTAACATTTATCAGGGCAGCAG
AGACAGACCCGGGAATGGTACATCTTGCTTTAGGAAGTGACTTAACAACATTAGGCCTCAATCT
GAACTCACCCGAAAATCTCTACCCCAAATTTGCATCACCCTGGGCTTCTTCACCTTGTCGACCT
CAAGATATAGACTTCCATGTTCCGTCAGAATATTTAACAAACATTCACATTAGGGATAAGCTGG
CTGCAATCAAACTTGGCCGATATGGAGAAGACCTCCTCTTCTATCTCTATTACATGAACGGAGG
AGACGTATTACAACTCTTAGCTGCAGTAGAGCTTTTTAACCGTGATTGGAGATACCACAAGGAG
GAGCGGGTATGGATTACCAGGGCACCAGGCATGGAGCCAACGATGAAAACCAACACATATGAGC
GAGGAACCTACTACTTCTTTGACTGTCTCAACTGGAGGAAAGTAGCTAAGGAGTTCCATCTGGA
ATATGACAAGTTAGAAGAGCGGCCTCACCTGCCGTCCACCTTCAACTACAACCCTGCTCAGCAA
GCCTTCTGAAAAGACTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTG
CAGAACTGATGTGGCTCAGGCACCCTGGTTTAATTCCTTGAGGATCTGGCAATTGGCTTACATA
AAGGGTCACCATTTGAGGTCCTGCCTTACCAATTATGTGCTGCCCAACAACTAAATTTGTACTT
TGTTTTCTCTAGTTTGAGCAGGGTCTGAATTTTCTCATTTATTTTCTTTTTGCCAGCAGACAGA
CTTGGGTCTATAAAGACAAGCAAGTACACTGACAGAAGTTACCATTTAGTTTCTTAAATGTAAA
AAAAGAAAACCCACAAAAGACTCAACAAAATTAGACCACAAAATTTGCATTGTTCATTGTAGCA
CTATTGGTAATAAAAGAGCAGATGTTTGTGCGTTTTGATGTGGAGATCCTTCTCGTATTTCATT
TGGAAAGATGAGCAAGGTCTGCTTCTTTCTTTTTACTTCCCCTTGTGTTTCTGAAAGGCAGTTT
CTCCAGGCTTACTGCAAGAATATGACTGTAGAGAGATTACCACAGTCTCTGGTGGCTCCAGGGC
TGTGTTGTTACTGAGCTTCATCTTTCCAGAATGAGCAAAACACTGTCCAGTCTTTGTTACGATT
TTGTAATAAATGTGTACATTTTTTTTAAATTTTGGACATCACATGAATAAAGGTATGTATGTAC
GAATGTGTATATATTATATATATGACATCTATTTTGGAAAATGTTTGCCCTGCTGTACCTCATT
TTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACATTCTGGAACTGCTGGTCAGGGGA
CTTTGTCGCCCTGTGCACTAAAGGGCCAGATTTTCAGCAGCCAAGGACATCCATACCCAAGTGA
ATGTGATGGGGCTTCAAGACGTGAACTGAGACAATTCACTCTGGCTGTGTGAACAGCAGCGTTT
CATAGGAAGAGAAAAAAGATCAATCTTGTATTTTCTGACCACATAAAGGCTTCTTCTCTTTGTA
ATAAAGTAGAAAAGCTCTCCTCA

hide sequence

RefSeq Acc Id:

XM_006241365 ⟹ XP_006241427

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,130,453 - 52,221,608 (-)	NCBI
Rnor_6.0	7	59,526,105 - 59,617,307 (-)	NCBI
Rnor_5.0	7	59,537,579 - 59,628,786 (-)	NCBI

Sequence:

show sequence

CAGAGGGTAAAGGTCTTGCTCCCAGCAGCCTCCGCGGTGGATACGTCGCCATCTTGGATCCGCG
GGACAAGAAAATTCATGCGAGGGAGAACTGGTGGGCGGTCCTTCCTGTGACACGACCCTTGAGT
GACAGTTCTATTTGATTGCCTCCAGTACTGTGAGGAAAGGACACGACTCTATGGTGAGGACTGA
TGGACATACATTATCTGAGAAAAGAAACTACCAGAAGAATCCCATCGTTTATCATGTTCTGGTT
GGACTCCTTTCTTATCGTTTGCTGGAGTTTGAACTTCAGAGCTATGGTGTCAACCCTGCTGTAA
TATCTCAGGGGAGCTCCTAGTGTGGGGCTGGTGCCATGGCTCACCCTCCAACCTTTCCTTCTTC
ACTTCAGCCTCCAGCTCTGAGCTTTCCCATCCCCAGAGTAGCAAATGTTGAAAGAAGTTGCACA
GGTGACAAACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTAGAGGGGGTGGACAGCGACTAC
CATGATGAAAACATGTACTACAGCCAGTCTTCTATGTTCCCACATCGGTCAGAGAAAGATATGC
TGGCATCACCATCTACATCAGGTCAGCTGTCTCAATTTGGGGCAAGTTTATACGGGCAACAAAG
TGCACTAGGCCTTCCAATGAGGGGGATGAGCAACAATACCCCTCAGTTAAATCGCAGCTTATCA
CAAGGCACTCAGTTACCGAGCCACGTCACGCCAACAACAGGGGTACCAACAATGTCACTTCACA
CGCCTCCATCTCCAAGCAGGGGTATTTTGCCTATGAATCCTAGGAATATGATGAACCACTCCCA
GGTTGGTCAGGGCATTGGAATTCCTAGCAGGACAAATAGCATGAGCAGTTCAGGGTTAGGTAGC
CCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCAGCAGCCTTCTCGACAGCCTTTTA
CTGTGAACAGTATGTCTGGATTTGGAATGAACAGGAATCAGGCATTTGGAATGAATAACTCCTT
ATCAAGTAACATTTTTAATGGAACAGATGGCAGTGAAAATGTGACAGGATTGGACCTTTCAGAT
TTCCCAGCATTAGCAGACCGGAATAGAAGGGAAGGAAGTGGCAACCCAACTCCATTAATAAACC
CCTTGGCTGGAAGAGCCCCTTACGTTGGAATGGTAACAAAACCTGCAAATGAGCAATCCCAGGA
CTTCTCAATACACAACGAAGATTTCCCAGCACTACCTGGCTCCAGCTATAAAGACCCAACGTCG
AGTAATGACGACAGCAAGTCTAATTTGAGTACATCGGGGAAGACGACTTCAAGTACAGATGGGC
CCAAATTTCCTGGAGATAAAAGTTCAACAACACAAAACAATAATCAGCAGAAAAAGGGGATCCA
GGTGTTACCTGATGGTCGAGTTACTAACATTCCTCAAGGGATGGTGACGGACCAATTTGGAATG
ATTGGCCTGTTAACATTTATCAGGGCAGCAGAGACAGACCCGGGAATGGTACATCTTGCTTTAG
GAAGTGACTTAACAACATTAGGCCTCAATCTGAACTCACCCGAAAATCTCTACCCCAAATTTGC
ATCACCCTGGGCTTCTTCACCTTGTCGACCTCAAGATATAGACTTCCATGTTCCGTCAGAATAT
TTAACAAACATTCACATTAGGGATAAGCTGGCTGCAATCAAACTTGGCCGATATGGAGAAGACC
TCCTCTTCTATCTCTATTACATGAACGGAGGAGACGTATTACAACTCTTAGCTGCAGTAGAGCT
TTTTAACCGTGATTGGAGATACCACAAGGAGGAGCGGGTATGGATTACCAGGGCACCAGGCATG
GAGCCAACGATGAAAACCAACACATATGAGCGAGGAACCTACTACTTCTTTGACTGTCTCAACT
GGAGGAAAGTAGCTAAGGAGTTCCATCTGGAATATGACAAGTTAGAAGAGCGGCCTCACCTGCC
GTCCACCTTCAACTACAACCCTGCTCAGCAAGCCTTCTGAAAAGACTCCCTTTTCTTGGGGTAT
GGCTGTCTCAGCACAATACTCGACATAACTGCAGAACTGATGTGGCTCAGGCACCCTGGTTTAA
TTCCTTGAGGATCTGGCAATTGGCTTACATAAAGGGTCACCATTTGAGGTCCTGCCTTACCAAT
TATGTGCTGCCCAACAACTAAATTTGTACTTTGTTTTCTCTAGTTTGAGCAGGGTCTGAATTTT
CTCATTTATTTTCTTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGAC
AGAAGTTACCATTTAGTTTCTTAAATGTAAAAAAAGAAAACCCACAAAAGACTCAACAAAATTA
GACCACAAAATTTGCATTGTTCATTGTAGCACTATTGGTAATAAAAGAGCAGATGTTTGTGCGT
TTTGATGTGGAGATCCTTCTCGTATTTCATTTGGAAAGATGAGCAAGGTCTGCTTCTTTCTTTT
TACTTCCCCTTGTGTTTCTGAAAGGCAGTTTCTCCAGGCTTACTGCAAGAATATGACTGTAGAG
AGATTACCACAGTCTCTGGTGGCTCCAGGGCTGTGTTGTTACTGAGCTTCATCTTTCCAGAATG
AGCAAAACACTGTCCAGTCTTTGTTACGATTTTGTAATAAATGTGTACATTTTTTTTAAATTTT
GGACATCACATGAATAAAGGTATGTATGTACGAATGTGTATATATTATATATATGACATCTATT
TTGGAAAATGTTTGCCCTGCTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAA
ATGGGACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGGGCCAGATTT
TCAGCAGCCAAGGACATCCATACCCAAGTGAATGTGATGGGGCTTCAAGACGTGAACTGAGACA
ATTCACTCTGGCTGTGTGAACAGCAGCGTTTCATAGGAAGAGAAAAAAGATCAATCTTGTATTT
TCTGACCACATAAAGGCTTCTTCTCTTTGTAATAAAGTAGAAAAGCTCTCCTCA

hide sequence

RefSeq Acc Id:

XM_006241366 ⟹ XP_006241428

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	59,526,105 - 59,617,307 (-)	NCBI
Rnor_5.0	7	59,537,579 - 59,628,786 (-)	NCBI

Sequence:

show sequence

CAGAGGGTAAAGGTCTTGCTCCCAGCAGCCTCCGCGGTGGATACGTCGCCATCTTGGATCCGCG
GGACAAGAAAATTCATGCGAGGGAGAACTGGTGGGCGGTCCTTCCTGTGACACGACCCTTGAGT
GACAGTTCTATTTGATTGCCTCCAGTACTGTGAGGAAAGGACACGACTCTATGGTGAGGACTGA
TGGACATACATTATCTGAGAAAAGAAACTACCAGAGCAGAAGAATCCCATCGTTTATCATGTTC
TGGTTGGACTCCTTTCTTATCGTTTGCTGGAGTTTGAACTTCAGAGCTATGGTGTCAACCCTGC
TGTAATATCTCAGGGGAGCTCCTAGTGTGGGGCTGGTGCCATGGCTCACCCTCCAACCTTTCCT
TCTTCACTTCAGCCTCCAGCTCTGAGCTTTCCCATCCCCAGAGTAGCAAATGTTGAAAGAAGTT
GCACAGGTGACAAACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTAGAGGGGGTGGACAGCG
ACTACCATGATGAAAACATGTACTACAGCCAGTCTTCTATGTTCCCACATCGGTCAGAGAAAGA
TATGCTGGCATCACCATCTACATCAGGTCAGCTGTCTCAATTTGGGGCAAGTTTATACGGGCAA
CAAAGTGCACTAGGCCTTCCAATGAGGGGGATGAGCAACAATACCCCTCAGTTAAATCGCAGCT
TATCACAAGGCACTCAGTTACCGAGCCACGTCACGCCAACAACAGGGGTACCAACAATGTCACT
TCACACGCCTCCATCTCCAAGCAGGGGTATTTTGCCTATGAATCCTAGGAATATGATGAACCAC
TCCCAGGTTGGTCAGGGCATTGGAATTCCTAGCAGGACAAATAGCATGAGCAGTTCAGGGTTAG
GTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCAGCAGCCTTCTCGACAGCC
TTTTACTGTGAACAGTATGTCTGGATTTGGAATGAACAGGAATCAGGCATTTGGAATGAATAAC
TCCTTATCAAGTAACATTTTTAATGGAACAGATGGCAGTGAAAATGTGACAGGATTGGACCTTT
CAGATTTCCCAGCATTAGCAGACCGGAATAGAAGGGAAGGAAGTGGCAACCCAACTCCATTAAT
AAACCCCTTGGCTGGAAGAGCCCCTTACGTTGGAATGGTAACAAAACCTGCAAATGAGCAATCC
CAGGACTTCTCAATACACAACGAAGATTTCCCAGCACTACCTGGCTCCAGCTATAAAGACCCAA
CGTCGAGTAATGACGACAGCAAGTCTAATTTGAGTACATCGGGGAAGACGACTTCAAGTACAGA
TGGGCCCAAATTTCCTGGAGATAAAAGTTCAACAACACAAAACAATAATCAGCAGAAAAAGGGG
ATCCAGGTGTTACCTGATGGTCGAGTTACTAACATTCCTCAAGGGATGGTGACGGACCAATTTG
GAATGATTGGCCTGTTAACATTTATCAGGGCAGCAGAGACAGACCCGGGAATGGTACATCTTGC
TTTAGGAAGTGACTTAACAACATTAGGCCTCAATCTGAACTCACCCGAAAATCTCTACCCCAAA
TTTGCATCACCCTGGGCTTCTTCACCTTGTCGACCTCAAGATATAGACTTCCATGTTCCGTCAG
AATATTTAACAAACATTCACATTAGGGATAAGCTGGCTGCAATCAAACTTGGCCGATATGGAGA
AGACCTCCTCTTCTATCTCTATTACATGAACGGAGGAGACGTATTACAACTCTTAGCTGCAGTA
GAGCTTTTTAACCGTGATTGGAGATACCACAAGGAGGAGCGGGTATGGATTACCAGGGCACCAG
GCATGGAGCCAACGATGAAAACCAACACATATGAGCGAGGAACCTACTACTTCTTTGACTGTCT
CAACTGGAGGAAAGTAGCTAAGGAGTTCCATCTGGAATATGACAAGTTAGAAGAGCGGCCTCAC
CTGCCGTCCACCTTCAACTACAACCCTGCTCAGCAAGCCTTCTGAAAAGACTCCCTTTTCTTGG
GGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAACTGATGTGGCTCAGGCACCCTGG
TTTAATTCCTTGAGGATCTGGCAATTGGCTTACATAAAGGGTCACCATTTGAGGTCCTGCCTTA
CCAATTATGTGCTGCCCAACAACTAAATTTGTACTTTGTTTTCTCTAGTTTGAGCAGGGTCTGA
ATTTTCTCATTTATTTTCTTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACA
CTGACAGAAGTTACCATTTAGTTTCTTAAATGTAAAAAAAGAAAACCCACAAAAGACTCAACAA
AATTAGACCACAAAATTTGCATTGTTCATTGTAGCACTATTGGTAATAAAAGAGCAGATGTTTG
TGCGTTTTGATGTGGAGATCCTTCTCGTATTTCATTTGGAAAGATGAGCAAGGTCTGCTTCTTT
CTTTTTACTTCCCCTTGTGTTTCTGAAAGGCAGTTTCTCCAGGCTTACTGCAAGAATATGACTG
TAGAGAGATTACCACAGTCTCTGGTGGCTCCAGGGCTGTGTTGTTACTGAGCTTCATCTTTCCA
GAATGAGCAAAACACTGTCCAGTCTTTGTTACGATTTTGTAATAAATGTGTACATTTTTTTTAA
ATTTTGGACATCACATGAATAAAGGTATGTATGTACGAATGTGTATATATTATATATATGACAT
CTATTTTGGAAAATGTTTGCCCTGCTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATA
TGAAAATGGGACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGGGCCA
GATTTTCAGCAGCCAAGGACATCCATACCCAAGTGAATGTGATGGGGCTTCAAGACGTGAACTG
AGACAATTCACTCTGGCTGTGTGAACAGCAGCGTTTCATAGGAAGAGAAAAAAGATCAATCTTG
TATTTTCTGACCACATAAAGGCTTCTTCTCTTTGTAATAAAGTAGAAAAGCTCTCCTCA

hide sequence

RefSeq Acc Id:

XM_006241367 ⟹ XP_006241429

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,130,453 - 52,222,326 (-)	NCBI
Rnor_6.0	7	59,526,105 - 59,617,307 (-)	NCBI
Rnor_5.0	7	59,537,579 - 59,628,786 (-)	NCBI

Sequence:

show sequence

CAGAGGGTAAAGGTCTTGCTCCCAGCAGCCTCCGCGGTGGATACGTCGCCATCTTGGATCCGCG
GGACAAGAAAATTCATGCGAGGGAGAACTGGTGGGCGGTCCTTCCTGTGACACGACCCTTGAGT
GACAGTTCTATTTGATTGCCTCCAGTACTGTGAGGAAAGGACACGACTCTATGGTGAGGACTGA
TGGACATACATTATCTGAGAAAAGAAACTACCAGCCTCCAGCTCTGAGCTTTCCCATCCCCAGA
GTAGCAAATGTTGAAAGAAGTTGCACAGGTGACAAACAGCATGTTTGGTGCTTCAAGAAAGAAG
TTTGTAGAGGGGGTGGACAGCGACTACCATGATGAAAACATGTACTACAGCCAGTCTTCTATGT
TCCCACATCGGTCAGAGAAAGATATGCTGGCATCACCATCTACATCAGGTCAGCTGTCTCAATT
TGGGGCAAGTTTATACGGGCAACAAAGTGCACTAGGCCTTCCAATGAGGGGGATGAGCAACAAT
ACCCCTCAGTTAAATCGCAGCTTATCACAAGGCACTCAGTTACCGAGCCACGTCACGCCAACAA
CAGGGGTACCAACAATGTCACTTCACACGCCTCCATCTCCAAGCAGGGGTATTTTGCCTATGAA
TCCTAGGAATATGATGAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCCTAGCAGGACAAAT
AGCATGAGCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAA
AGCAGCAGCCTTCTCGACAGCCTTTTACTGTGAACAGTATGTCTGGATTTGGAATGAACAGGAA
TCAGGCATTTGGAATGAATAACTCCTTATCAAGTAACATTTTTAATGGAACAGATGGCAGTGAA
AATGTGACAGGATTGGACCTTTCAGATTTCCCAGCATTAGCAGACCGGAATAGAAGGGAAGGAA
GTGGCAACCCAACTCCATTAATAAACCCCTTGGCTGGAAGAGCCCCTTACGTTGGAATGGTAAC
AAAACCTGCAAATGAGCAATCCCAGGACTTCTCAATACACAACGAAGATTTCCCAGCACTACCT
GGCTCCAGCTATAAAGACCCAACGTCGAGTAATGACGACAGCAAGTCTAATTTGAGTACATCGG
GGAAGACGACTTCAAGTACAGATGGGCCCAAATTTCCTGGAGATAAAAGTTCAACAACACAAAA
CAATAATCAGCAGAAAAAGGGGATCCAGGTGTTACCTGATGGTCGAGTTACTAACATTCCTCAA
GGGATGGTGACGGACCAATTTGGAATGATTGGCCTGTTAACATTTATCAGGGCAGCAGAGACAG
ACCCGGGAATGGTACATCTTGCTTTAGGAAGTGACTTAACAACATTAGGCCTCAATCTGAACTC
ACCCGAAAATCTCTACCCCAAATTTGCATCACCCTGGGCTTCTTCACCTTGTCGACCTCAAGAT
ATAGACTTCCATGTTCCGTCAGAATATTTAACAAACATTCACATTAGGGATAAGCTGGCTGCAA
TCAAACTTGGCCGATATGGAGAAGACCTCCTCTTCTATCTCTATTACATGAACGGAGGAGACGT
ATTACAACTCTTAGCTGCAGTAGAGCTTTTTAACCGTGATTGGAGATACCACAAGGAGGAGCGG
GTATGGATTACCAGGGCACCAGGCATGGAGCCAACGATGAAAACCAACACATATGAGCGAGGAA
CCTACTACTTCTTTGACTGTCTCAACTGGAGGAAAGTAGCTAAGGAGTTCCATCTGGAATATGA
CAAGTTAGAAGAGCGGCCTCACCTGCCGTCCACCTTCAACTACAACCCTGCTCAGCAAGCCTTC
TGAAAAGACTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAAC
TGATGTGGCTCAGGCACCCTGGTTTAATTCCTTGAGGATCTGGCAATTGGCTTACATAAAGGGT
CACCATTTGAGGTCCTGCCTTACCAATTATGTGCTGCCCAACAACTAAATTTGTACTTTGTTTT
CTCTAGTTTGAGCAGGGTCTGAATTTTCTCATTTATTTTCTTTTTGCCAGCAGACAGACTTGGG
TCTATAAAGACAAGCAAGTACACTGACAGAAGTTACCATTTAGTTTCTTAAATGTAAAAAAAGA
AAACCCACAAAAGACTCAACAAAATTAGACCACAAAATTTGCATTGTTCATTGTAGCACTATTG
GTAATAAAAGAGCAGATGTTTGTGCGTTTTGATGTGGAGATCCTTCTCGTATTTCATTTGGAAA
GATGAGCAAGGTCTGCTTCTTTCTTTTTACTTCCCCTTGTGTTTCTGAAAGGCAGTTTCTCCAG
GCTTACTGCAAGAATATGACTGTAGAGAGATTACCACAGTCTCTGGTGGCTCCAGGGCTGTGTT
GTTACTGAGCTTCATCTTTCCAGAATGAGCAAAACACTGTCCAGTCTTTGTTACGATTTTGTAA
TAAATGTGTACATTTTTTTTAAATTTTGGACATCACATGAATAAAGGTATGTATGTACGAATGT
GTATATATTATATATATGACATCTATTTTGGAAAATGTTTGCCCTGCTGTACCTCATTTTTAGG
AGGTGTGCATGGATGCAATATATGAAAATGGGACATTCTGGAACTGCTGGTCAGGGGACTTTGT
CGCCCTGTGCACTAAAGGGCCAGATTTTCAGCAGCCAAGGACATCCATACCCAAGTGAATGTGA
TGGGGCTTCAAGACGTGAACTGAGACAATTCACTCTGGCTGTGTGAACAGCAGCGTTTCATAGG
AAGAGAAAAAAGATCAATCTTGTATTTTCTGACCACATAAAGGCTTCTTCTCTTTGTAATAAAG
TAGAAAAGCTCTCCTCA

hide sequence

RefSeq Acc Id:

XM_006241369 ⟹ XP_006241431

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,130,453 - 52,222,327 (-)	NCBI
Rnor_6.0	7	59,526,105 - 59,617,297 (-)	NCBI
Rnor_5.0	7	59,537,579 - 59,628,786 (-)	NCBI

Sequence:

show sequence

AGGTCTTGCTCCCAGCAGCCTCCGCGGTGGATACGTCGCCATCTTGGATCCGCGGGACAAGAAA
ATTCATGCGTACTGTGAGGAAAGGACACGACTCTATGGTGAGGACTGATGGACATACATTATCT
GAGAAAAGAAACTACCAGATGCTGGCATCACCATCTACATCAGGTCAGCTGTCTCAATTTGGGG
CAAGTTTATACGGGCAACAAAGTGCACTAGGCCTTCCAATGAGGGGGATGAGCAACAATACCCC
TCAGTTAAATCGCAGCTTATCACAAGGCACTCAGTTACCGAGCCACGTCACGCCAACAACAGGG
GTACCAACAATGTCACTTCACACGCCTCCATCTCCAAGCAGGGGTATTTTGCCTATGAATCCTA
GGAATATGATGAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCCTAGCAGGACAAATAGCAT
GAGCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCAG
CAGCCTTCTCGACAGCCTTTTACTGTGAACAGTATGTCTGGATTTGGAATGAACAGGAATCAGG
CATTTGGAATGAATAACTCCTTATCAAGTAACATTTTTAATGGAACAGATGGCAGTGAAAATGT
GACAGGATTGGACCTTTCAGATTTCCCAGCATTAGCAGACCGGAATAGAAGGGAAGGAAGTGGC
AACCCAACTCCATTAATAAACCCCTTGGCTGGAAGAGCCCCTTACGTTGGAATGGTAACAAAAC
CTGCAAATGAGCAATCCCAGGACTTCTCAATACACAACGAAGATTTCCCAGCACTACCTGGCTC
CAGCTATAAAGACCCAACGTCGAGTAATGACGACAGCAAGTCTAATTTGAGTACATCGGGGAAG
ACGACTTCAAGTACAGATGGGCCCAAATTTCCTGGAGATAAAAGTTCAACAACACAAAACAATA
ATCAGCAGAAAAAGGGGATCCAGGTGTTACCTGATGGTCGAGTTACTAACATTCCTCAAGGGAT
GGTGACGGACCAATTTGGAATGATTGGCCTGTTAACATTTATCAGGGCAGCAGAGACAGACCCG
GGAATGGTACATCTTGCTTTAGGAAGTGACTTAACAACATTAGGCCTCAATCTGAACTCACCCG
AAAATCTCTACCCCAAATTTGCATCACCCTGGGCTTCTTCACCTTGTCGACCTCAAGATATAGA
CTTCCATGTTCCGTCAGAATATTTAACAAACATTCACATTAGGGATAAGCTGGCTGCAATCAAA
CTTGGCCGATATGGAGAAGACCTCCTCTTCTATCTCTATTACATGAACGGAGGAGACGTATTAC
AACTCTTAGCTGCAGTAGAGCTTTTTAACCGTGATTGGAGATACCACAAGGAGGAGCGGGTATG
GATTACCAGGGCACCAGGCATGGAGCCAACGATGAAAACCAACACATATGAGCGAGGAACCTAC
TACTTCTTTGACTGTCTCAACTGGAGGAAAGTAGCTAAGGAGTTCCATCTGGAATATGACAAGT
TAGAAGAGCGGCCTCACCTGCCGTCCACCTTCAACTACAACCCTGCTCAGCAAGCCTTCTGAAA
AGACTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAACTGATG
TGGCTCAGGCACCCTGGTTTAATTCCTTGAGGATCTGGCAATTGGCTTACATAAAGGGTCACCA
TTTGAGGTCCTGCCTTACCAATTATGTGCTGCCCAACAACTAAATTTGTACTTTGTTTTCTCTA
GTTTGAGCAGGGTCTGAATTTTCTCATTTATTTTCTTTTTGCCAGCAGACAGACTTGGGTCTAT
AAAGACAAGCAAGTACACTGACAGAAGTTACCATTTAGTTTCTTAAATGTAAAAAAAGAAAACC
CACAAAAGACTCAACAAAATTAGACCACAAAATTTGCATTGTTCATTGTAGCACTATTGGTAAT
AAAAGAGCAGATGTTTGTGCGTTTTGATGTGGAGATCCTTCTCGTATTTCATTTGGAAAGATGA
GCAAGGTCTGCTTCTTTCTTTTTACTTCCCCTTGTGTTTCTGAAAGGCAGTTTCTCCAGGCTTA
CTGCAAGAATATGACTGTAGAGAGATTACCACAGTCTCTGGTGGCTCCAGGGCTGTGTTGTTAC
TGAGCTTCATCTTTCCAGAATGAGCAAAACACTGTCCAGTCTTTGTTACGATTTTGTAATAAAT
GTGTACATTTTTTTTAAATTTTGGACATCACATGAATAAAGGTATGTATGTACGAATGTGTATA
TATTATATATATGACATCTATTTTGGAAAATGTTTGCCCTGCTGTACCTCATTTTTAGGAGGTG
TGCATGGATGCAATATATGAAAATGGGACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCC
TGTGCACTAAAGGGCCAGATTTTCAGCAGCCAAGGACATCCATACCCAAGTGAATGTGATGGGG
CTTCAAGACGTGAACTGAGACAATTCACTCTGGCTGTGTGAACAGCAGCGTTTCATAGGAAGAG
AAAAAAGATCAATCTTGTATTTTCTGACCACATAAAGGCTTCTTCTCTTTGTAATAAAGTAGAA
AAGCTCTCCTCA

hide sequence

RefSeq Acc Id:

XM_006241370 ⟹ XP_006241432

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,130,453 - 52,221,617 (-)	NCBI
Rnor_6.0	7	59,526,105 - 59,617,307 (-)	NCBI
Rnor_5.0	7	59,537,579 - 59,628,786 (-)	NCBI

Sequence:

show sequence

CAGAGGGTAAAGGTCTTGCTCCCAGCAGCCTCCGCGGTGGATACGTCGCCATCTTGGATCCGCG
GGACAAGAAAATTCATGCGAGGGAGAACTGGTGGGCGGTCCTTCCTGTGACACGACCCTTGAGT
GACAGTTCTATTTGATTGCCTCCAGTACTGTGAGGAAAGGACACGACTCTATGGTGAGGACTGA
TGGACATACATTATCTGAGAAAAGAAACTACCAGGTGACAAACAGCATGTTTGGTGCTTCAAGA
AAGAAGTTTGTAGAGGGGGTGGACAGCGACTACCATGATGAAAACATGTACTACAGCCAGTCTT
CTATGTTCCCACATCGGTCAGAGAAAGATGTGCACTAGGCCTTCCAATGAGGGGGATGAGCAAC
AATACCCCTCAGTTAAATCGCAGCTTATCACAAGGCACTCAGTTACCGAGCCACGTCACGCCAA
CAACAGGGGTACCAACAATGTCACTTCACACGCCTCCATCTCCAAGCAGGGGTATTTTGCCTAT
GAATCCTAGGAATATGATGAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCCTAGCAGGACA
AATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGC
CAAAGCAGCAGCCTTCTCGACAGCCTTTTACTGTGAACAGTATGTCTGGATTTGGAATGAACAG
GAATCAGGCATTTGGAATGAATAACTCCTTATCAAGTAACATTTTTAATGGAACAGATGGCAGT
GAAAATGTGACAGGATTGGACCTTTCAGATTTCCCAGCATTAGCAGACCGGAATAGAAGGGAAG
GAAGTGGCAACCCAACTCCATTAATAAACCCCTTGGCTGGAAGAGCCCCTTACGTTGGAATGGT
AACAAAACCTGCAAATGAGCAATCCCAGGACTTCTCAATACACAACGAAGATTTCCCAGCACTA
CCTGGCTCCAGCTATAAAGACCCAACGTCGAGTAATGACGACAGCAAGTCTAATTTGAGTACAT
CGGGGAAGACGACTTCAAGTACAGATGGGCCCAAATTTCCTGGAGATAAAAGTTCAACAACACA
AAACAATAATCAGCAGAAAAAGGGGATCCAGGTGTTACCTGATGGTCGAGTTACTAACATTCCT
CAAGGGATGGTGACGGACCAATTTGGAATGATTGGCCTGTTAACATTTATCAGGGCAGCAGAGA
CAGACCCGGGAATGGTACATCTTGCTTTAGGAAGTGACTTAACAACATTAGGCCTCAATCTGAA
CTCACCCGAAAATCTCTACCCCAAATTTGCATCACCCTGGGCTTCTTCACCTTGTCGACCTCAA
GATATAGACTTCCATGTTCCGTCAGAATATTTAACAAACATTCACATTAGGGATAAGCTGGCTG
CAATCAAACTTGGCCGATATGGAGAAGACCTCCTCTTCTATCTCTATTACATGAACGGAGGAGA
CGTATTACAACTCTTAGCTGCAGTAGAGCTTTTTAACCGTGATTGGAGATACCACAAGGAGGAG
CGGGTATGGATTACCAGGGCACCAGGCATGGAGCCAACGATGAAAACCAACACATATGAGCGAG
GAACCTACTACTTCTTTGACTGTCTCAACTGGAGGAAAGTAGCTAAGGAGTTCCATCTGGAATA
TGACAAGTTAGAAGAGCGGCCTCACCTGCCGTCCACCTTCAACTACAACCCTGCTCAGCAAGCC
TTCTGAAAAGACTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAG
AACTGATGTGGCTCAGGCACCCTGGTTTAATTCCTTGAGGATCTGGCAATTGGCTTACATAAAG
GGTCACCATTTGAGGTCCTGCCTTACCAATTATGTGCTGCCCAACAACTAAATTTGTACTTTGT
TTTCTCTAGTTTGAGCAGGGTCTGAATTTTCTCATTTATTTTCTTTTTGCCAGCAGACAGACTT
GGGTCTATAAAGACAAGCAAGTACACTGACAGAAGTTACCATTTAGTTTCTTAAATGTAAAAAA
AGAAAACCCACAAAAGACTCAACAAAATTAGACCACAAAATTTGCATTGTTCATTGTAGCACTA
TTGGTAATAAAAGAGCAGATGTTTGTGCGTTTTGATGTGGAGATCCTTCTCGTATTTCATTTGG
AAAGATGAGCAAGGTCTGCTTCTTTCTTTTTACTTCCCCTTGTGTTTCTGAAAGGCAGTTTCTC
CAGGCTTACTGCAAGAATATGACTGTAGAGAGATTACCACAGTCTCTGGTGGCTCCAGGGCTGT
GTTGTTACTGAGCTTCATCTTTCCAGAATGAGCAAAACACTGTCCAGTCTTTGTTACGATTTTG
TAATAAATGTGTACATTTTTTTTAAATTTTGGACATCACATGAATAAAGGTATGTATGTACGAA
TGTGTATATATTATATATATGACATCTATTTTGGAAAATGTTTGCCCTGCTGTACCTCATTTTT
AGGAGGTGTGCATGGATGCAATATATGAAAATGGGACATTCTGGAACTGCTGGTCAGGGGACTT
TGTCGCCCTGTGCACTAAAGGGCCAGATTTTCAGCAGCCAAGGACATCCATACCCAAGTGAATG
TGATGGGGCTTCAAGACGTGAACTGAGACAATTCACTCTGGCTGTGTGAACAGCAGCGTTTCAT
AGGAAGAGAAAAAAGATCAATCTTGTATTTTCTGACCACATAAAGGCTTCTTCTCTTTGTAATA
AAGTAGAAAAGCTCTCCTCA

hide sequence

RefSeq Acc Id:

XM_017594741 ⟹ XP_017450230

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,130,448 - 52,222,327 (-)	NCBI
Rnor_6.0	7	59,526,105 - 59,617,307 (-)	NCBI

Sequence:

show sequence

CAGAGGGTAAAGGTCTTGCTCCCAGCAGCCTCCGCGGTGGATACGTCGCCATCTTGGATCCGCG
GGACAAGAAAATTCATGCGAGGGAGAACTGGTGGGCGGTCCTTCCTGTGACACGACCCTTGAGT
GACAGTTCTATTTGATTGCCTCCAGTACTGTGAGGAAAGGACACGACTCTATGGTGAGGACTGA
TGGACATACATTATCTGAGAAAAGAAACTACCAGATGCTGGCATCACCATCTACATCAGGTCAG
CTGTCTCAATTTGGGGCAAGTTTATACGGGCAACAAAGTGCACTAGGCCTTCCAATGAGGGGGA
TGAGCAACAATACCCCTCAGTTAAATCGCAGCTTATCACAAGGCACTCAGTTACCGAGCCACGT
CACGCCAACAACAGGGGTACCAACAATGTCACTTCACACGCCTCCATCTCCAAGCAGGGGTATT
TTGCCTATGAATCCTAGGAATATGATGAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCCTA
GCAGGACAAATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAAT
ATGTATGCCAAAGCAGCAGCCTTCTCGACAGCCTTTTACTGTGAACAGTATGTCTGGATTTGGA
ATGAACAGGAATCAGGCATTTGGAATGAATAACTCCTTATCAAGTAACATTTTTAATGGAACAG
ATGGCAGTGAAAATGTGACAGGATTGGACCTTTCAGATTTCCCAGCATTAGCAGACCGGAATAG
AAGGGAAGGAAGTGGCAACCCAACTCCATTAATAAACCCCTTGGCTGGAAGAGCCCCTTACGTT
GGAATGGTAACAAAACCTGCAAATGAGCAATCCCAGGACTTCTCAATACACAACGAAGATTTCC
CAGCACTACCTGGCTCCAGCTATAAAGACCCAACGTCGAGTAATGACGACAGCAAGTCTAATTT
GAGTACATCGGGGAAGACGACTTCAAGTACAGATGGGCCCAAATTTCCTGGAGATAAAAGTTCA
ACAACACAAAACAATAATCAGCAGAAAAAGGGGATCCAGGTGTTACCTGATGGTCGAGTTACTA
ACATTCCTCAAGGGATGGTGACGGACCAATTTGGAATGATTGGCCTGTTAACATTTATCAGGGC
AGCAGAGACAGACCCGGGAATGGTACATCTTGCTTTAGGAAGTGACTTAACAACATTAGGCCTC
AATCTGAACTCACCCGAAAATCTCTACCCCAAATTTGCATCACCCTGGGCTTCTTCACCTTGTC
GACCTCAAGATATAGACTTCCATGTTCCGTCAGAATATTTAACAAACATTCACATTAGGGATAA
GCTGGCTGCAATCAAACTTGGCCGATATGGAGAAGACCTCCTCTTCTATCTCTATTACATGAAC
GGAGGAGACGTATTACAACTCTTAGCTGCAGTAGAGCTTTTTAACCGTGATTGGAGATACCACA
AGGAGGAGCGGGTATGGATTACCAGGGCACCAGGCATGGAGCCAACGATGAAAACCAACACATA
TGAGCGAGGAACCTACTACTTCTTTGACTGTCTCAACTGGAGGAAAGTAGCTAAGGAGTTCCAT
CTGGAATATGACAAGTTAGAAGAGCGGCCTCACCTGCCGTCCACCTTCAACTACAACCCTGCTC
AGCAAGCCTTCTGAAAAGACTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACAT
AACTGCAGAACTGATGTGGCTCAGGCACCCTGGTTTAATTCCTTGAGGATCTGGCAATTGGCTT
ACATAAAGGGTCACCATTTGAGGTCCTGCCTTACCAATTATGTGCTGCCCAACAACTAAATTTG
TACTTTGTTTTCTCTAGTTTGAGCAGGGTCTGAATTTTCTCATTTATTTTCTTTTTGCCAGCAG
ACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGACAGAAGTTACCATTTAGTTTCTTAAAT
GTAAAAAAAGAAAACCCACAAAAGACTCAACAAAATTAGACCACAAAATTTGCATTGTTCATTG
TAGCACTATTGGTAATAAAAGAGCAGATGTTTGTGCGTTTTGATGTGGAGATCCTTCTCGTATT
TCATTTGGAAAGATGAGCAAGGTCTGCTTCTTTCTTTTTACTTCCCCTTGTGTTTCTGAAAGGC
AGTTTCTCCAGGCTTACTGCAAGAATATGACTGTAGAGAGATTACCACAGTCTCTGGTGGCTCC
AGGGCTGTGTTGTTACTGAGCTTCATCTTTCCAGAATGAGCAAAACACTGTCCAGTCTTTGTTA
CGATTTTGTAATAAATGTGTACATTTTTTTTAAATTTTGGACATCACATGAATAAAGGTATGTA
TGTACGAATGTGTATATATTATATATATGACATCTATTTTGGAAAATGTTTGCCCTGCTGTACC
TCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACATTCTGGAACTGCTGGTCA
GGGGACTTTGTCGCCCTGTGCACTAAAGGGCCAGATTTTCAGCAGCCAAGGACATCCATACCCA
AGTGAATGTGATGGGGCTTCAAGACGTGAACTGAGACAATTCACTCTGGCTGTGTGAACAGCAG
CGTTTCATAGGAAGAGAAAAAAGATCAATCTTGTATTTTCTGACCACATAAAGGCTTCTTCTCT
TTGTAATAAAGTAGAAAAGCTCTCCTCA

hide sequence

RefSeq Acc Id:

XM_039078717 ⟹ XP_038934645

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,130,453 - 52,221,318 (-)	NCBI

RefSeq Acc Id:

XM_039078718 ⟹ XP_038934646

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,130,453 - 52,211,785 (-)	NCBI

RefSeq Acc Id:

XM_039078719 ⟹ XP_038934647

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,130,453 - 52,194,904 (-)	NCBI

RefSeq Acc Id:

XM_039078720 ⟹ XP_038934648

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,130,453 - 52,222,326 (-)	NCBI

RefSeq Acc Id:

XM_039078722 ⟹ XP_038934650

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,130,453 - 52,191,726 (-)	NCBI

RefSeq Acc Id:

XM_039078723 ⟹ XP_038934651

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,130,453 - 52,222,326 (-)	NCBI

RefSeq Acc Id:

XM_039078724 ⟹ XP_038934652

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,130,453 - 52,191,716 (-)	NCBI

RefSeq Acc Id:

XM_039078725 ⟹ XP_038934653

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,133,513 - 52,222,329 (-)	NCBI

RefSeq Acc Id:

XM_039078726 ⟹ XP_038934654

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,131,062 - 52,222,328 (-)	NCBI

RefSeq Acc Id:

XM_039078727 ⟹ XP_038934655

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,131,062 - 52,222,327 (-)	NCBI

RefSeq Acc Id:

XM_039078728 ⟹ XP_038934656

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,131,062 - 52,222,328 (-)	NCBI

RefSeq Acc Id:

XM_039078730 ⟹ XP_038934658

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,131,062 - 52,222,327 (-)	NCBI

RefSeq Acc Id:

XM_039078731 ⟹ XP_038934659

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,131,062 - 52,222,328 (-)	NCBI

RefSeq Acc Id:

XM_039078732 ⟹ XP_038934660

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,131,062 - 52,222,328 (-)	NCBI

RefSeq Acc Id:

XM_039078733 ⟹ XP_038934661

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,131,062 - 52,222,325 (-)	NCBI

RefSeq Acc Id:

XM_039078734 ⟹ XP_038934662

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,131,062 - 52,191,719 (-)	NCBI

RefSeq Acc Id:

XM_039078735 ⟹ XP_038934663

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,131,062 - 52,145,999 (-)	NCBI

RefSeq Acc Id:

XR_005486575

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	52,142,856 - 52,222,338 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001011988	(Get FASTA)	NCBI Sequence Viewer
	XP_006241425	(Get FASTA)	NCBI Sequence Viewer
	XP_006241426	(Get FASTA)	NCBI Sequence Viewer
	XP_006241427	(Get FASTA)	NCBI Sequence Viewer
	XP_006241429	(Get FASTA)	NCBI Sequence Viewer
	XP_006241431	(Get FASTA)	NCBI Sequence Viewer
	XP_006241432	(Get FASTA)	NCBI Sequence Viewer
	XP_017450230	(Get FASTA)	NCBI Sequence Viewer
	XP_038934645	(Get FASTA)	NCBI Sequence Viewer
	XP_038934646	(Get FASTA)	NCBI Sequence Viewer
	XP_038934647	(Get FASTA)	NCBI Sequence Viewer
	XP_038934648	(Get FASTA)	NCBI Sequence Viewer
	XP_038934650	(Get FASTA)	NCBI Sequence Viewer
	XP_038934651	(Get FASTA)	NCBI Sequence Viewer
	XP_038934652	(Get FASTA)	NCBI Sequence Viewer
	XP_038934653	(Get FASTA)	NCBI Sequence Viewer
	XP_038934654	(Get FASTA)	NCBI Sequence Viewer
	XP_038934655	(Get FASTA)	NCBI Sequence Viewer
	XP_038934656	(Get FASTA)	NCBI Sequence Viewer
	XP_038934658	(Get FASTA)	NCBI Sequence Viewer
	XP_038934659	(Get FASTA)	NCBI Sequence Viewer
	XP_038934660	(Get FASTA)	NCBI Sequence Viewer
	XP_038934661	(Get FASTA)	NCBI Sequence Viewer
	XP_038934662	(Get FASTA)	NCBI Sequence Viewer
	XP_038934663	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87653	(Get FASTA)	NCBI Sequence Viewer
	EDM16655	(Get FASTA)	NCBI Sequence Viewer
	EDM16656	(Get FASTA)	NCBI Sequence Viewer
	EDM16658	(Get FASTA)	NCBI Sequence Viewer
	EDM16662	(Get FASTA)	NCBI Sequence Viewer
	EDM16665	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001011988 ⟸ NM_001011988

- UniProtKB:

Q5PPJ8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGI
GIPSRTNSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIF
NGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHN
EDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDG
RVTNIPQGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWAS
SPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDW
RYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEH

hide sequence

RefSeq Acc Id:

XP_006241431 ⟸ XM_006241369

- Peptide Label:

isoform X5

- Sequence:

show sequence

MRTVRKGHDSMVRTDGHTLSEKRNYQMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQ
LNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMS
SSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVT
GLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSS
YKDPTSSNDDSKSNLSTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMV
TDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDF
HVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWI
TRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF

hide sequence

RefSeq Acc Id:

XP_006241425 ⟸ XM_006241363

- Peptide Label:

isoform X1

- Sequence:

show sequence

MRTVRKGHDSMVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRS
EKDMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPT
MSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQPS
RQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPT
PLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTS
STDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIRAAETDPGMV
HLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGR
YGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFF
DCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF

hide sequence

RefSeq Acc Id:

XP_006241432 ⟸ XM_006241370

- Peptide Label:

isoform X9

- Sequence:

show sequence

MRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGI
GIPSRTNSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIF
NGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHN
EDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDG
RVTNIPQGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWAS
SPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDW
RYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNY
NPAQQAF

hide sequence

RefSeq Acc Id:	XP_006241426 ⟸ XM_006241364
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K717 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST SGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPS RGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMS GFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRA PYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSSTDGPKFPGD KSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTT LGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLY YMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAK EFHLEYDKLEERPHLPSTFNYNPAQQAF hide sequence

RefSeq Acc Id:

XP_006241429 ⟸ XM_006241367

- Peptide Label:

isoform X3

- Sequence:

show sequence

MLKEVAQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGA
SLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPR
NMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQA
FGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKP
ANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSSTDGPKFPGDKSSTTQNNN
QQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPE
NLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQ
LLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKL
EERPHLPSTFNYNPAQQAF

hide sequence

RefSeq Acc Id:

XP_006241427 ⟸ XM_006241365

- Peptide Label:

isoform X3

- Sequence:

show sequence

MLKEVAQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGA
SLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPR
NMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQA
FGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKP
ANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSSTDGPKFPGDKSSTTQNNN
QQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPE
NLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQ
LLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKL
EERPHLPSTFNYNPAQQAF

hide sequence

RefSeq Acc Id:

XP_006241428 ⟸ XM_006241366

- Peptide Label:

isoform X3

- Sequence:

show sequence

MLKEVAQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGA
SLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPR
NMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQA
FGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKP
ANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSSTDGPKFPGDKSSTTQNNN
QQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPE
NLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQ
LLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKL
EERPHLPSTFNYNPAQQAF

hide sequence

RefSeq Acc Id:

XP_017450230 ⟸ XM_017594741

- Peptide Label:

isoform X6

- Sequence:

show sequence

MVRTDGHTLSEKRNYQMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQ
LPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRS
SPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPAL
ADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDD
SKSNLSTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLL
TFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNI
HIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTM
KTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF

hide sequence

RefSeq Acc Id:

ENSRNOP00000074023 ⟸ ENSRNOT00000091427

RefSeq Acc Id:

ENSRNOP00000061277 ⟸ ENSRNOT00000066396

RefSeq Acc Id:

ENSRNOP00000075690 ⟸ ENSRNOT00000085836

RefSeq Acc Id:	XP_038934648 ⟸ XM_039078720
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038934651 ⟸ XM_039078723
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038934645 ⟸ XM_039078717
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038934646 ⟸ XM_039078718
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038934647 ⟸ XM_039078719
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038934650 ⟸ XM_039078722
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038934652 ⟸ XM_039078724
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038934660 ⟸ XM_039078732
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_038934656 ⟸ XM_039078728
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038934654 ⟸ XM_039078726
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038934659 ⟸ XM_039078731
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038934658 ⟸ XM_039078730
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038934655 ⟸ XM_039078727
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038934661 ⟸ XM_039078733
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_038934662 ⟸ XM_039078734
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_038934663 ⟸ XM_039078735
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_038934653 ⟸ XM_039078725
- Peptide Label:	isoform X4

Protein Domains

NOT2_3_5

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311672	AgrOrtholog
Ensembl Genes	ENSRNOG00000004909	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000061277	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000074023	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000075690	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000066396	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000085836	UniProtKB/TrEMBL
	ENSRNOT00000091427	UniProtKB/TrEMBL
Gene3D-CATH	2.30.30.1020	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7313082	IMAGE-MGC_LOAD
InterPro	CCR4-NOT_su2/3/5_N_sf	UniProtKB/TrEMBL
	NOT	UniProtKB/TrEMBL
	Not2/3/5	UniProtKB/TrEMBL
KEGG Report	rno:299805	UniProtKB/TrEMBL
MGC_CLONE	MGC:105588	IMAGE-MGC_LOAD
NCBI Gene	299805	ENTREZGENE
PANTHER	PTHR23326	UniProtKB/TrEMBL
Pfam	NOT2_3_5	UniProtKB/TrEMBL
PhenoGen	Cnot2	PhenoGen
UniProt	A0A0G2K717	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2KB82_RAT	UniProtKB/TrEMBL
	Q5PPJ8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Cnot2	CCR4-NOT transcription complex, subunit 2	Cnot2_predicted	CCR4-NOT transcription complex, subunit 2 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Cnot2_predicted	CCR4-NOT transcription complex, subunit 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)