Lyz2 (lysozyme 2) - Rat Genome Database

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Gene: Lyz2 (lysozyme 2) Rattus norvegicus
Analyze
Symbol: Lyz2
Name: lysozyme 2
RGD ID: 3026
Description: Enables lysozyme activity. Involved in defense response to Gram-negative bacterium and defense response to Gram-positive bacterium. Located in several cellular components, including Golgi cis cisterna; cytoplasmic vesicle; and rough endoplasmic reticulum lumen. Human ortholog(s) of this gene implicated in familial visceral amyloidosis. Orthologous to human LYZ (lysozyme); INTERACTS WITH 1,2,4-trimethylbenzene; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 1,4-beta-N-acetylmuramidase C; lysozyme; lysozyme C-1; Lysz; Lyz; Lyz1
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8754,792,715 - 54,798,060 (-)NCBIGRCr8
mRatBN7.2752,906,810 - 52,912,154 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl752,906,811 - 52,912,106 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx754,813,530 - 54,818,826 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0757,016,639 - 57,021,935 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0756,794,518 - 56,799,814 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0760,335,968 - 60,341,264 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl760,335,969 - 60,341,264 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0760,337,950 - 60,343,281 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4756,607,708 - 56,613,004 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1756,628,438 - 56,633,734 (-)NCBI
Celera749,680,647 - 49,685,943 (-)NCBICelera
RH 3.4 Map7480.1RGD
Cytogenetic Map7q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-artemisinin  (ISO)
(1->4)-beta-D-glucan  (ISO)
(5Z,8Z,11Z,13E)-15-HETE  (ISO)
1,2,4-trimethylbenzene  (EXP)
1,2-dimethylhydrazine  (ISO)
1-Ethyl-2-benzimidazolinone  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,5-hexanedione  (EXP)
2-butoxyethanol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aconitine  (EXP)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
ampicillin  (EXP)
antirheumatic drug  (ISO)
azathioprine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bleomycin A2  (EXP)
buspirone  (EXP)
buta-1,3-diene  (ISO)
butyric acid  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
captan  (ISO)
carbachol  (ISO)
carbon nanotube  (ISO)
carnosic acid  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt atom  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
curcumin  (EXP,ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
dibutyl phthalate  (ISO)
diclofenac  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
diuron  (ISO)
dodecanoic acid  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
fenofibrate  (ISO)
ferric oxide  (ISO)
ferroheme b  (ISO)
flutamide  (EXP)
folic acid  (ISO)
folpet  (ISO)
fumonisin B1  (ISO)
furan  (EXP)
gemcitabine  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glyburide  (ISO)
heme b  (ISO)
hydrogen peroxide  (ISO)
imidacloprid  (EXP)
irinotecan  (ISO)
L-methionine  (ISO)
lead(II) chloride  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (EXP)
methylmercury chloride  (EXP)
metronidazole  (EXP)
milrinone  (EXP)
Muraglitazar  (EXP)
N-formyl-L-methionyl-L-leucyl-L-phenylalanine  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (EXP)
neomycin  (EXP)
nickel atom  (ISO)
nickel subsulfide  (EXP)
nimesulide  (EXP)
nitrofen  (EXP)
paracetamol  (ISO)
paraquat  (EXP,ISO)
parthenolide  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
quercetin  (ISO)
resveratrol  (EXP)
rotenone  (ISO)
SB 203580  (ISO)
senecionine  (ISO)
sodium arsenite  (ISO)
streptozocin  (EXP)
T-2 toxin  (ISO)
Tesaglitazar  (EXP)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
tetradecane  (EXP)
thapsigargin  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
triticonazole  (EXP)
troglitazone  (EXP,ISO)
trovafloxacin  (EXP,ISO)
tungsten  (ISO)
Tungsten carbide  (ISO)
valproic acid  (ISO)
vanadyl sulfate  (EXP)
vancomycin  (EXP,ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Role of acid back-diffusion, glutathione, oxyradical, and histamine in antral hemorrhagic ulcer in rats: the protective effect of lysozyme chloride and antioxidants. Hung CR and Wang PS, J Lab Clin Med 2002 Sep;140(3):142-51.
3. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Human lysozyme gene mutations cause hereditary systemic amyloidosis. Pepys MB, etal., Nature. 1993 Apr 8;362(6420):553-7.
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Lysozyme expression in the rat parotid gland: light and electron microscopic immunogold studies. Staneva-Dobrovski L Histochem Cell Biol. 1997 May;107(5):371-81.
12. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
13. Effects of lead administration at low doses by different routes on rat spleens. Study of response of splenic lymphocytes and tissue lysozyme. Teijon C, etal., Toxicology. 2003 Sep 30;191(2-3):245-58.
14. Bactericidal activity of testicular macrophages. Wei RQ, etal., Biol Reprod. 1988 May;38(4):830-5.
15. A novel lysozyme mutation Phe57Ile associated with hereditary renal amyloidosis. Yazaki M, etal., Kidney Int. 2003 May;63(5):1652-7.
Additional References at PubMed
PMID:851497   PMID:8081549   PMID:9727055   PMID:12411294   PMID:14977423   PMID:16502470   PMID:19056867   PMID:19199708   PMID:21093056   PMID:21805676   PMID:22664934   PMID:23353684  
PMID:23376485   PMID:23533145   PMID:23580065  


Genomics

Comparative Map Data
Lyz2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8754,792,715 - 54,798,060 (-)NCBIGRCr8
mRatBN7.2752,906,810 - 52,912,154 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl752,906,811 - 52,912,106 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx754,813,530 - 54,818,826 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0757,016,639 - 57,021,935 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0756,794,518 - 56,799,814 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0760,335,968 - 60,341,264 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl760,335,969 - 60,341,264 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0760,337,950 - 60,343,281 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4756,607,708 - 56,613,004 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1756,628,438 - 56,633,734 (-)NCBI
Celera749,680,647 - 49,685,943 (-)NCBICelera
RH 3.4 Map7480.1RGD
Cytogenetic Map7q22NCBI
LYZ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381269,348,381 - 69,354,234 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1269,348,381 - 69,354,234 (+)EnsemblGRCh38hg38GRCh38
GRCh371269,742,161 - 69,748,014 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361268,028,431 - 68,034,280 (+)NCBINCBI36Build 36hg18NCBI36
Build 341268,028,430 - 68,034,280NCBI
Celera1269,405,811 - 69,411,693 (+)NCBICelera
Cytogenetic Map12q15NCBI
HuRef1266,791,650 - 66,797,534 (+)NCBIHuRef
CHM1_11269,710,537 - 69,716,432 (+)NCBICHM1_1
T2T-CHM13v2.01269,327,311 - 69,333,169 (+)NCBIT2T-CHM13v2.0
Lyz2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910117,113,446 - 117,118,177 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10117,113,236 - 117,118,226 (-)EnsemblGRCm39 Ensembl
GRCm3810117,277,541 - 117,282,272 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10117,277,331 - 117,282,321 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710116,714,597 - 116,719,328 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610116,681,443 - 116,686,374 (-)NCBIMGSCv36mm8
Celera10119,220,558 - 119,225,289 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1065.34NCBI
LYZ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21077,375,766 - 77,381,645 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11277,372,162 - 77,378,043 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01266,870,373 - 66,876,250 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11269,646,794 - 69,652,677 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1269,646,794 - 69,652,677 (+)Ensemblpanpan1.1panPan2
LYZ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11011,346,500 - 11,350,639 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1011,346,435 - 11,351,040 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1011,278,390 - 11,282,529 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01011,469,702 - 11,473,856 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1011,469,637 - 11,474,257 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11011,337,085 - 11,341,219 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01011,583,952 - 11,588,107 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01011,706,255 - 11,710,386 (+)NCBIUU_Cfam_GSD_1.0
LOC101959346
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494546,939,255 - 46,944,566 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365457,134,165 - 7,170,474 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365457,165,917 - 7,170,840 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYZ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl533,612,567 - 33,618,945 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1533,612,593 - 33,618,953 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2536,179,190 - 36,185,552 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap5p11NCBI
LYZ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11164,978,153 - 64,984,351 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1164,978,119 - 64,984,495 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037180,708,862 - 180,715,047 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lyz
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462494816,041 - 21,560 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462494816,850 - 21,578 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lyz2
19 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:239
Count of miRNA genes:164
Interacting mature miRNAs:179
Transcripts:ENSRNOT00000007747, ENSRNOT00000064784
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)72940968353612950Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
2303629Vencon3Ventilatory control QTL 37.25respiration trait (VT:0001943)respiration rate (CMO:0000289)74110969256793354Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat

Markers in Region
D7Mgh22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2752,888,326 - 52,888,450 (+)MAPPERmRatBN7.2
Rnor_6.0760,317,489 - 60,317,612NCBIRnor6.0
Rnor_5.0760,319,471 - 60,319,594UniSTSRnor5.0
RGSC_v3.4756,589,319 - 56,589,443RGDRGSC3.4
RGSC_v3.4756,589,320 - 56,589,443UniSTSRGSC3.4
RGSC_v3.1756,610,049 - 56,610,173RGD
Celera749,662,162 - 49,662,285UniSTS
RH 3.4 Map7488.5UniSTS
RH 3.4 Map7488.5RGD
RH 2.0 Map7411.2RGD
Cytogenetic Map7q22UniSTS
D7Wox39  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2752,912,956 - 52,913,192 (+)MAPPERmRatBN7.2
Rnor_6.0760,342,115 - 60,342,350NCBIRnor6.0
Rnor_5.0760,344,097 - 60,344,332UniSTSRnor5.0
RGSC_v3.4756,613,855 - 56,614,090UniSTSRGSC3.4
Celera749,686,794 - 49,687,029UniSTS
Cytogenetic Map7q22UniSTS
RH127643  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2752,894,025 - 52,894,214 (-)MAPPERmRatBN7.2
mRatBN7.2752,894,025 - 52,894,214 (+)MAPPERmRatBN7.2
mRatBN7.2752,907,042 - 52,907,229 (+)MAPPERmRatBN7.2
Rnor_6.0760,336,201 - 60,336,387NCBIRnor6.0
Rnor_6.0760,323,189 - 60,323,377NCBIRnor6.0
Rnor_5.0760,338,183 - 60,338,369UniSTSRnor5.0
Rnor_5.0760,325,171 - 60,325,359UniSTSRnor5.0
RGSC_v3.4756,594,924 - 56,595,112UniSTSRGSC3.4
RGSC_v3.4756,607,941 - 56,608,127UniSTSRGSC3.4
Celera749,680,880 - 49,681,066UniSTS
Celera749,667,862 - 49,668,050UniSTS
RH 3.4 Map7480.9UniSTS
Cytogenetic Map7q22UniSTS
RH127838  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2752,894,050 - 52,894,271 (-)MAPPERmRatBN7.2
mRatBN7.2752,894,050 - 52,894,271 (+)MAPPERmRatBN7.2
mRatBN7.2752,906,985 - 52,907,204 (+)MAPPERmRatBN7.2
Rnor_6.0760,336,144 - 60,336,362NCBIRnor6.0
Rnor_6.0760,323,214 - 60,323,434NCBIRnor6.0
Rnor_5.0760,338,126 - 60,338,344UniSTSRnor5.0
Rnor_5.0760,325,196 - 60,325,416UniSTSRnor5.0
RGSC_v3.4756,594,949 - 56,595,169UniSTSRGSC3.4
RGSC_v3.4756,607,884 - 56,608,102UniSTSRGSC3.4
Celera749,680,823 - 49,681,041UniSTS
Celera749,667,887 - 49,668,107UniSTS
RH 3.4 Map7480.9UniSTS
Cytogenetic Map7q22UniSTS
RH94553  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2752,887,468 - 52,887,631 (-)MAPPERmRatBN7.2
mRatBN7.2752,887,468 - 52,887,631 (+)MAPPERmRatBN7.2
mRatBN7.2752,911,578 - 52,911,741 (-)MAPPERmRatBN7.2
mRatBN7.2752,911,578 - 52,911,741 (+)MAPPERmRatBN7.2
Rnor_6.0760,340,737 - 60,340,899NCBIRnor6.0
Rnor_6.0760,316,631 - 60,316,793NCBIRnor6.0
Rnor_5.0760,318,613 - 60,318,775UniSTSRnor5.0
Rnor_5.0760,342,719 - 60,342,881UniSTSRnor5.0
RGSC_v3.4756,588,462 - 56,588,624UniSTSRGSC3.4
RGSC_v3.4756,612,477 - 56,612,639UniSTSRGSC3.4
Celera749,685,416 - 49,685,578UniSTS
Celera749,661,304 - 49,661,466UniSTS
RH 3.4 Map7480.1UniSTS
Cytogenetic Map7q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 1 3 11
Medium 2 29 57 41 16 41 8 11 29 33 32 8
Low 10 43 2 9
Below cutoff 4 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_012771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC058490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L12459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000007747   ⟹   ENSRNOP00000007747
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl752,906,811 - 52,912,106 (-)Ensembl
Rnor_6.0 Ensembl760,335,969 - 60,341,264 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097754   ⟹   ENSRNOP00000088305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl752,907,008 - 52,912,106 (-)Ensembl
RefSeq Acc Id: NM_012771   ⟹   NP_036903
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8754,792,715 - 54,798,011 (-)NCBI
mRatBN7.2752,906,810 - 52,912,106 (-)NCBI
Rnor_6.0760,335,968 - 60,341,264 (-)NCBI
Rnor_5.0760,337,950 - 60,343,281 (-)NCBI
RGSC_v3.4756,607,708 - 56,613,004 (-)RGD
Celera749,680,647 - 49,685,943 (-)RGD
Sequence:
RefSeq Acc Id: XM_039078440   ⟹   XP_038934368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8754,792,715 - 54,798,060 (-)NCBI
mRatBN7.2752,906,810 - 52,912,154 (-)NCBI
Protein Sequences
Protein RefSeqs NP_036903 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934368 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41551 (Get FASTA)   NCBI Sequence Viewer  
  AAH58490 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000007747
  ENSRNOP00000007747.5
  ENSRNOP00000088305.1
GenBank Protein P00697 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_036903   ⟸   NM_012771
- Peptide Label: precursor
- UniProtKB: P00697 (UniProtKB/Swiss-Prot),   Q6PDV1 (UniProtKB/TrEMBL),   A0A077S1I6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000007747   ⟸   ENSRNOT00000007747
RefSeq Acc Id: XP_038934368   ⟸   XM_039078440
- Peptide Label: isoform X1
- UniProtKB: F1M8E9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000088305   ⟸   ENSRNOT00000097754
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P00697-F1-model_v2 AlphaFold P00697 1-148 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695213
Promoter ID:EPDNEW_R5737
Type:multiple initiation site
Name:Lyz2_1
Description:lysozyme 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0760,341,264 - 60,341,324EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3026 AgrOrtholog
BioCyc Gene G2FUF-34008 BioCyc
Ensembl Genes ENSRNOG00000005825 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007747.8 UniProtKB/TrEMBL
  ENSRNOT00000097754.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.530.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6919643 IMAGE-MGC_LOAD
InterPro Glyco_hydro_22 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glyco_hydro_22_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glyco_hydro_22_lys UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lysozyme-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25211 UniProtKB/TrEMBL
MGC_CLONE MGC:72912 IMAGE-MGC_LOAD
NCBI Gene 25211 ENTREZGENE
PANTHER PTHR11407 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11407:SF28 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Lys UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lyz2 PhenoGen
PRINTS LYSOZYME UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LYZLACT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE GLYCOSYL_HYDROL_F22_1 UniProtKB/TrEMBL
  GLYCOSYL_HYDROL_F22_2 UniProtKB/TrEMBL
  LACTALBUMIN_LYSOZYME_1 UniProtKB/Swiss-Prot
  LACTALBUMIN_LYSOZYME_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000005825 RatGTEx
SMART LYZ1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53955 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A077S1I6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A9R6_RAT UniProtKB/TrEMBL
  F1M8E9 ENTREZGENE, UniProtKB/TrEMBL
  LYSC1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q6PDV1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-05-15 Lyz2  lysozyme 2  Lyz  lysozyme  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Lyz  Lysozyme      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_process improves antral hemorrhagic ulcer caused by glutathione and histamine 724421
gene_protein 18 amino acids 724421