D7Rat169 Marker Search Result - Rat Genome Database

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Marker: D7Rat169

Symbol: D7Rat169
Previously known as: oxsts11380; R0110-C08; 
RGD ID: 39884
Expected Size: 207 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8749,605,702 - 49,605,909 (+)Marker Load Pipeline
mRatBN7.2747,719,466 - 47,719,673 (+)MAPPERmRatBN7.2
Rnor_6.0754,998,209 - 54,998,415NCBIRnor6.0
Rnor_5.0755,017,742 - 55,017,948UniSTSRnor5.0
RGSC_v3.4751,344,691 - 51,344,898RGDRGSC3.4
RGSC_v3.4751,344,692 - 51,344,898UniSTSRGSC3.4
RGSC_v3.1751,365,111 - 51,365,507RGD
Celera744,513,417 - 44,513,623UniSTS
FHH x ACI Map726.78UniSTS
FHH x ACI Map726.78RGD
Cytogenetic Map7q12-q22UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   Kcnc2  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer CTCACCACATTTTTCCCTGAG
Reverse Primer ACTGGTAGCCTACACCCGTG
 
Template 
CAAGNTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTGGCAGGGTGACACAGTATAATTC
CAGGAAAGGGCAAGTAGAGACAATAGGAAACCTGGGATTGCTTAGCCGGCCAGCCTAGTTTACT
TGGTGAGCCCAGGGTCTTGGTGAAATACCCTTCCTCAAATAACCTGGGTAGATCCCGAAGAATG
GCTGTTAAAGTCAACTGGTAGCCTACACCCGTGTGTGCATACATAATACTCACAATGCACCGAT
ACATGATCACTCACAAACACATGCACACATACACACTCTACACACCCATACATACAAACACACA
CACACACACACACACACGCACACACACACACACACACACACACAAGTCTACTGTATGTCTTTAA
GGCTACATAATCTCAGGGAAAAATGTGGTGAGTTTCTANATGTCTTTGAACAGAGAGGGTACCG
NGCTCGNNTTCGTAATCATGGTCATGGCTGTTTCCTGTGTGACATTGGTGTCCGCTCACNATTC
CANACAACATNCGNGCGNGAAGCATAAGGNGTAAGCCTGGGGTGCNAATGAGTGANTGCTCNNT
NNGTGGGNGNCTNCGNC
Strain, Expected Size(s)

ACI/N 209 AVN/Orl 209 BBDP/Rhw 209
BBDR/Rhw 209 BC/CpbU 209 BDIX/Han 209
BDVII/Cub 213 BN-Lx/Cub 209 BN/SsNHsd 209
BP/Cub 209 BUF/Pit 213 COP/OlaHsd 209
DA/PitN 209 DON/Melb 213 F344/Pit 213
FHH/Eur 191 GH/Omr 209 GK/KyoSwe 213
IS/Kyo 213 LE/Mol 209 LEW/Pit 209
LH/Mav 209 LN/Mav 209 LOU/CHan 209
M520/N 209 MHS/Gib 209 MNR/N 209
MNRA/N 209 MNS/Gib 209 MR/Pit 209
NEDH/K 209 NP9 209 ODU/N 213
OKA/Wsl 213 OM/Ztm 193 P5C 209
PVG/Pit 209 SD/Rij 211 SHR/OlaHsd 213
SHRSP/Riv 213 SR/Jr 209 SS/Jr 209
WAG/RijKyo 209 WF/Pit 209 WIST/Nhg 209
WKY/OlaHsd 213 WN/N 209 WTC/Kyo 213


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
628829Kcnc2potassium voltage-gated channel subfamily C member 274770003547883979Rat
GenBank Nucleotide CH473960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 44 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat

1 to 10 of 44 rows


Database
Acc Id
Source(s)
NCBI Gene 246153 UniSTS