Xpot (exportin for tRNA) - Rat Genome Database

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Gene: Xpot (exportin for tRNA) Rattus norvegicus
Analyze
Symbol: Xpot
Name: exportin for tRNA
RGD ID: 1305562
Description: Predicted to enable tRNA binding activity. Predicted to be involved in tRNA re-export from nucleus. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm and nuclear matrix. Orthologous to human XPOT (exportin for tRNA); PARTICIPATES IN RNA transport pathway; INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: exportin, tRNA; exportin, tRNA (nuclear export receptor for tRNAs); exportin-T; LOC314879
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8758,997,025 - 59,037,506 (-)NCBIGRCr8
mRatBN7.2757,111,536 - 57,152,013 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl757,111,536 - 57,152,099 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx759,023,288 - 59,063,697 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0761,226,165 - 61,266,574 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0761,003,873 - 61,044,282 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0763,688,646 - 63,728,988 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl763,690,053 - 63,728,988 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0763,912,373 - 63,951,227 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4760,898,206 - 60,937,868 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1760,919,844 - 60,958,675 (-)NCBI
Celera753,854,337 - 53,893,237 (-)NCBICelera
Cytogenetic Map7q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
XpotRatmucopolysaccharidosis type IIID  ISORGD:13136628554872ClinVar Annotator: match by term: Mucopolysaccharidosis, MPS-III-DClinVarPMID:20232353|PMID:28492532

1 to 20 of 98 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
XpotRat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of XPOT mRNA]CTDPMID:31150632
XpotRat1-nitropyrene increases expressionISORGD:131366264804641-nitropyrene results in increased expression of XPOT mRNACTDPMID:19041380
XpotRat17beta-estradiol increases expressionISORGD:13136626480464Estradiol results in increased expression of XPOT mRNACTDPMID:20106945|PMID:31614463
XpotRat17beta-estradiol increases expressionISORGD:13136636480464Estradiol results in increased expression of XPOT mRNACTDPMID:39298647
XpotRat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISORGD:131366264804642,2',4,4'-tetrabromodiphenyl ether results in decreased expression of XPOT proteinCTDPMID:31675489
XpotRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:13136636480464[Tetrachlorodibenzodioxin binds to AHR protein] which results in increased expression of XPOT mRNACTDPMID:16214954
XpotRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:13136626480464Tetrachlorodibenzodioxin results in decreased expression of XPOT mRNACTDPMID:20106945|PMID:21632981
XpotRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:13136636480464Tetrachlorodibenzodioxin results in increased expression of XPOT mRNACTDPMID:19465110
XpotRat2,4-dibromophenyl 2,4,5-tribromophenyl ether increases expressionISORGD:131366264804642,2',4,4',5-brominated diphenyl ether results in increased expression of XPOT mRNACTDPMID:26705709
XpotRat2,4-dinitrotoluene affects expressionEXP 64804642,4-dinitrotoluene affects the expression of XPOT mRNACTDPMID:21346803
XpotRat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISORGD:13136626480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...CTDPMID:28628672
XpotRat4,4'-sulfonyldiphenol increases expressionISORGD:13136636480464bisphenol S results in increased expression of XPOT mRNACTDPMID:39298647
XpotRat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of XPOT mRNACTDPMID:30047161
XpotRatacetamide decreases expressionEXP 6480464acetamide results in decreased expression of XPOT mRNACTDPMID:31881176
XpotRatacrylamide increases expressionISORGD:13136626480464Acrylamide results in increased expression of XPOT mRNACTDPMID:32763439
XpotRatactinomycin D multiple interactionsISORGD:13136626480464[Dactinomycin co-treated with nutlin 3] results in increased secretion of XPOT proteinCTDPMID:38460933
XpotRataflatoxin B1 affects expressionISORGD:13136626480464Aflatoxin B1 affects the expression of XPOT proteinCTDPMID:20106945
XpotRataflatoxin B1 decreases expressionISORGD:13136626480464Aflatoxin B1 results in decreased expression of XPOT mRNACTDPMID:21632981
XpotRatall-trans-retinoic acid decreases expressionISORGD:13136626480464Tretinoin results in decreased expression of XPOT mRNACTDPMID:15498508|PMID:18614847|PMID:33167477
XpotRatamitrole increases expressionEXP 6480464Amitrole results in increased expression of XPOT mRNACTDPMID:30047161

1 to 20 of 98 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
XpotRatintracellular protein transport involved_inIEAInterPro:IPR0014941600115GO_REF:0000002InterProGO_REF:0000002
XpotRatnucleocytoplasmic transport involved_inIEAARBA:ARBA000277581600115GO_REF:0000117UniProtGO_REF:0000117
XpotRattRNA export from nucleus involved_inISORGD:13136621624291 PMID:9660920RGDPMID:9660920
XpotRattRNA export from nucleus involved_inIEAUniProtKB:O43592|ensembl:ENSP000003278211600115GO_REF:0000107EnsemblGO_REF:0000107
XpotRattRNA export from nucleus involved_inIEAInterPro:IPR0400171600115GO_REF:0000002InterProGO_REF:0000002
XpotRattRNA re-export from nucleus involved_inIEAUniRule:UR0011847641600115GO_REF:0000104UniProtGO_REF:0000104
XpotRattRNA re-export from nucleus involved_inIEAInterPro:IPR0400171600115GO_REF:0000002InterProGO_REF:0000002
XpotRattRNA re-export from nucleus involved_inIBAPANTHER:PTN000409486|SGD:S0000016881600115GO_REF:0000033GO_CentralGO_REF:0000033

Cellular Component
1 to 16 of 16 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
XpotRatcytoplasm located_inISORGD:13136621624291 PMID:9660920RGDPMID:9660920
XpotRatcytoplasm located_inIEAUniProtKB:O43592|ensembl:ENSP000003278211600115GO_REF:0000107EnsemblGO_REF:0000107
XpotRatcytoplasm located_inIEAUniRule:UR0011847641600115GO_REF:0000104UniProtGO_REF:0000104
XpotRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
XpotRatcytoplasm is_active_inIBAPANTHER:PTN000409486|SGD:S000001688|UniProtKB:O43592|UniProtKB:Q586K41600115GO_REF:0000033GO_CentralGO_REF:0000033
XpotRatcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
XpotRatcytosol located_inIEAUniProtKB:O43592|ensembl:ENSP000003278211600115GO_REF:0000107EnsemblGO_REF:0000107
XpotRatcytosol located_inISORGD:13136621624291 RGDGO_REF:0000052
XpotRatnuclear matrix is_active_inIBAPANTHER:PTN000409486|SGD:S0000016881600115GO_REF:0000033GO_CentralGO_REF:0000033
XpotRatnuclear pore located_inISORGD:13136621624291 PMID:9660920RGDPMID:9660920
XpotRatnuclear pore located_inIEAUniProtKB:O43592|ensembl:ENSP000003278211600115GO_REF:0000107EnsemblGO_REF:0000107
XpotRatnuclear pore part_ofIBAPANTHER:PTN000409486|TAIR:locus:2030280|UniProtKB:O435921600115GO_REF:0000033GO_CentralGO_REF:0000033
XpotRatnucleoplasm located_inIEAUniProtKB:O43592|ensembl:ENSP000003278211600115GO_REF:0000107EnsemblGO_REF:0000107
XpotRatnucleoplasm located_inISORGD:13136621624291 PMID:9660920RGDGO_REF:0000052|PMID:9660920
XpotRatnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
XpotRatnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
1 to 16 of 16 rows

Molecular Function
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
XpotRatprotein binding enablesISORGD:13136621624291UniProtKB:O95678|UniProtKB:P62826|UniProtKB:P78424|UniProtKB:Q13595 PMID:32296183RGDPMID:32296183
XpotRatRNA binding enablesIEAUniProtKB-KW:KW-06941600115GO_REF:0000043UniProtGO_REF:0000043
XpotRatsmall GTPase binding enablesIEAInterPro:IPR001494|InterPro:IPR0400171600115GO_REF:0000002InterProGO_REF:0000002
XpotRatsmall GTPase binding enablesIEAInterPro:IPR0400171600115GO_REF:0000002InterProGO_REF:0000002
XpotRattRNA binding enablesISORGD:13136621624291 PMID:9660920RGDPMID:9660920
XpotRattRNA binding enablesIEAUniProtKB:O43592|ensembl:ENSP000003278211600115GO_REF:0000107EnsemblGO_REF:0000107
XpotRattRNA binding enablesIEAInterPro:IPR0400171600115GO_REF:0000002InterProGO_REF:0000002
XpotRattRNA binding enablesIEAUniRule:UR0011847641600115GO_REF:0000104UniProtGO_REF:0000104
XpotRattRNA binding enablesIBAPANTHER:PTN000409486|PomBase:SPBP8B7.09c|UniProtKB:O435921600115GO_REF:0000033GO_CentralGO_REF:0000033
XpotRattRNA binding enablesIEAUniProtKB-KW:KW-08201600115GO_REF:0000043UniProtGO_REF:0000043
1 to 10 of 10 rows

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
XpotRatRNA transport pathway  IEA 6907045 KEGGrno:03013

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:9660920  



Xpot
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8758,997,025 - 59,037,506 (-)NCBIGRCr8
mRatBN7.2757,111,536 - 57,152,013 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl757,111,536 - 57,152,099 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx759,023,288 - 59,063,697 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0761,226,165 - 61,266,574 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0761,003,873 - 61,044,282 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0763,688,646 - 63,728,988 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl763,690,053 - 63,728,988 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0763,912,373 - 63,951,227 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4760,898,206 - 60,937,868 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1760,919,844 - 60,958,675 (-)NCBI
Celera753,854,337 - 53,893,237 (-)NCBICelera
Cytogenetic Map7q22NCBI
XPOT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381264,404,392 - 64,451,125 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1264,404,392 - 64,451,125 (+)EnsemblGRCh38hg38GRCh38
GRCh371264,798,172 - 64,844,905 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361263,084,500 - 63,128,731 (+)NCBINCBI36Build 36hg18NCBI36
Build 341263,084,499 - 63,128,728NCBI
Celera1264,462,903 - 64,506,901 (+)NCBICelera
Cytogenetic Map12q14.2NCBI
HuRef1261,850,500 - 61,894,809 (+)NCBIHuRef
CHM1_11264,765,247 - 64,809,559 (+)NCBICHM1_1
T2T-CHM13v2.01264,382,995 - 64,429,752 (+)NCBIT2T-CHM13v2.0
Xpot
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910121,423,285 - 121,462,411 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10121,423,285 - 121,462,237 (-)EnsemblGRCm39 Ensembl
GRCm3810121,587,380 - 121,626,506 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10121,587,380 - 121,626,332 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710121,024,436 - 121,063,372 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610120,990,440 - 121,029,376 (-)NCBIMGSCv36mm8
Celera10123,970,630 - 124,005,131 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1069.86NCBI
Xpot
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545811,162,782 - 11,208,849 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545811,162,612 - 11,206,515 (+)NCBIChiLan1.0ChiLan1.0
XPOT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21029,917,982 - 29,962,413 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11229,914,753 - 29,959,184 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01224,469,893 - 24,516,694 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11224,969,881 - 25,016,517 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1224,969,881 - 25,016,517 (-)Ensemblpanpan1.1panPan2
XPOT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1107,121,275 - 7,163,692 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl107,121,684 - 7,213,139 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha107,057,551 - 7,099,328 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0107,231,797 - 7,273,581 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl107,231,781 - 7,273,577 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1107,097,730 - 7,139,500 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0107,349,460 - 7,392,166 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0107,480,924 - 7,522,701 (+)NCBIUU_Cfam_GSD_1.0
Xpot
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494551,349,390 - 51,388,669 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365452,721,379 - 2,762,793 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365452,721,437 - 2,762,785 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
XPOT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl528,828,566 - 28,875,325 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1528,678,971 - 28,875,336 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2532,040,486 - 32,075,831 (+)NCBISscrofa10.2Sscrofa10.2susScr3
XPOT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11160,087,492 - 60,132,383 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1160,092,482 - 60,131,948 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037185,672,658 - 185,717,372 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Xpot
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248023,919,994 - 3,953,843 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248023,915,852 - 3,953,791 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Xpot
258 total Variants

Predicted Target Of
Summary Value
Count of predictions:502
Count of miRNA genes:256
Interacting mature miRNAs:325
Transcripts:ENSRNOT00000009645
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 36 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat

1 to 10 of 36 rows
RH141504  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2757,113,943 - 57,114,105 (+)MAPPERmRatBN7.2
Rnor_6.0763,691,054 - 63,691,215NCBIRnor6.0
Rnor_5.0763,913,374 - 63,913,535UniSTSRnor5.0
RGSC_v3.4760,899,207 - 60,899,368UniSTSRGSC3.4
Celera753,855,338 - 53,855,499UniSTS
RH 3.4 Map7498.7UniSTS
Cytogenetic Map7q22UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000009645   ⟹   ENSRNOP00000009645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl757,112,943 - 57,151,847 (-)Ensembl
Rnor_6.0 Ensembl763,690,053 - 63,728,988 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102971   ⟹   ENSRNOP00000092214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl757,111,536 - 57,147,173 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105244   ⟹   ENSRNOP00000081558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl757,111,536 - 57,152,099 (-)Ensembl
RefSeq Acc Id: NM_001401047   ⟹   NP_001387976
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8758,997,025 - 59,037,502 (-)NCBI
mRatBN7.2757,111,536 - 57,152,013 (-)NCBI
RefSeq Acc Id: XM_039079137   ⟹   XP_038935065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8758,997,025 - 59,037,506 (-)NCBI
mRatBN7.2757,111,536 - 57,151,791 (-)NCBI
RefSeq Acc Id: XM_039079138   ⟹   XP_038935066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8758,997,025 - 59,030,000 (-)NCBI
mRatBN7.2757,111,536 - 57,144,511 (-)NCBI
1 to 11 of 11 rows
Protein RefSeqs NP_001387976 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935065 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935066 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM16545 (Get FASTA)   NCBI Sequence Viewer  
  EDM16546 (Get FASTA)   NCBI Sequence Viewer  
  EDM16547 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009645.4
  ENSRNOP00000081558
  ENSRNOP00000081558.1
  ENSRNOP00000092214
  ENSRNOP00000092214.1
1 to 11 of 11 rows
Ensembl Acc Id: ENSRNOP00000009645   ⟸   ENSRNOT00000009645
RefSeq Acc Id: XP_038935065   ⟸   XM_039079137
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZT11 (UniProtKB/TrEMBL),   A0A8I6AHQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935066   ⟸   XM_039079138
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AHQ9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000092214   ⟸   ENSRNOT00000102971
Ensembl Acc Id: ENSRNOP00000081558   ⟸   ENSRNOT00000105244
Exportin-1/Importin-beta-like   Exportin-T C-terminal   Importin N-terminal

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZZ62-F1-model_v2 AlphaFold D3ZZ62 1-728 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13695228
Promoter ID:EPDNEW_R5752
Type:initiation region
Name:Xpot_1
Description:exportin for tRNA
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0763,729,042 - 63,729,102EPDNEW


1 to 27 of 27 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-33870 BioCyc
Ensembl Genes ENSRNOG00000007088 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009645.6 UniProtKB/TrEMBL
  ENSRNOT00000102971 ENTREZGENE
  ENSRNOT00000102971.1 UniProtKB/TrEMBL
  ENSRNOT00000105244 ENTREZGENE
  ENSRNOT00000105244.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Exportin-1/Importin-b-like UniProtKB/TrEMBL
  Exportin-T_C UniProtKB/TrEMBL
  Importin-b_N UniProtKB/TrEMBL
  XPOT UniProtKB/TrEMBL
NCBI Gene 314879 ENTREZGENE
PANTHER EXPORTIN-T UniProtKB/TrEMBL
  PTHR15952 UniProtKB/TrEMBL
Pfam Exportin-T UniProtKB/TrEMBL
  IBN_N UniProtKB/TrEMBL
  Xpo1 UniProtKB/TrEMBL
PhenoGen Xpot PhenoGen
RatGTEx ENSRNOG00000007088 RatGTEx
SMART IBN_N UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I5ZT11 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHQ9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZZ62_RAT UniProtKB/TrEMBL
1 to 27 of 27 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-22 Xpot  exportin for tRNA  Xpot  exportin, tRNA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-02 Xpot  exportin, tRNA  Xpot  exportin, tRNA (nuclear export receptor for tRNAs)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Xpot  exportin, tRNA (nuclear export receptor for tRNAs)   Xpot_predicted  exportin, tRNA (nuclear export receptor for tRNAs) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Xpot_predicted  exportin, tRNA (nuclear export receptor for tRNAs) (predicted)      Symbol and Name status set to approved 70820 APPROVED