Xpot (exportin for tRNA) - Rat Genome Database

Name: Xpot
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Xpot (exportin for tRNA) Rattus norvegicus

Analyze

Symbol:

Xpot

Name:

exportin for tRNA

RGD ID:

1305562

Description:

Predicted to enable tRNA binding activity. Predicted to be involved in tRNA re-export from nucleus. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm and nuclear matrix. Orthologous to human XPOT (exportin for tRNA); PARTICIPATES IN RNA transport pathway; INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

exportin, tRNA; exportin, tRNA (nuclear export receptor for tRNAs); exportin-T; LOC314879

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	XPOT (exportin for tRNA)	HGNC	Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Xpot (exportin, tRNA (nuclear export receptor for tRNAs))	HGNC	NCBI, OMA, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Xpot (exportin for tRNA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	XPOT (exportin for tRNA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	XPOT (exportin for tRNA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Xpot (exportin for tRNA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	XPOT (exportin for tRNA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	XPOT (exportin for tRNA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Xpot (exportin for tRNA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	XPOT (exportin for tRNA)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Xpot (exportin, tRNA (nuclear export receptor for tRNAs))	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	xpot (exportin, tRNA (nuclear export receptor for tRNAs))	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	LOS1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	xpo-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	57,111,536 - 57,151,847 (-)	NCBI
Rnor_6.0 Ensembl	7	63,690,053 - 63,728,988 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	7	63,688,646 - 63,728,988 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	7	63,912,373 - 63,951,227 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	60,898,206 - 60,937,868 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	7	60,919,844 - 60,958,675 (-)	NCBI
Celera	7	53,854,337 - 53,893,237 (-)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1-nitropyrene (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

calcitriol (ISO)

carbamazepine (ISO)

clofibrate (ISO)

cobalt dichloride (EXP)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

endosulfan (EXP)

enzyme inhibitor (ISO)

flutamide (EXP)

genistein (EXP)

gentamycin (EXP)

hydrazine (ISO)

indometacin (ISO)

lead diacetate (EXP)

methapyrilene (EXP)

methylmercury chloride (ISO)

methylparaben (ISO)

N-methyl-4-phenylpyridinium (EXP,ISO)

nefazodone (EXP)

nimesulide (EXP)

paracetamol (ISO)

perfluorononanoic acid (ISO)

phenobarbital (ISO)

piroxicam (ISO)

progesterone (ISO)

quercetin (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tamibarotene (ISO)

tetrachloromethane (EXP,ISO)

thapsigargin (ISO)

titanium dioxide (ISO)

tunicamycin (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein transport (IEA)

tRNA export from nucleus (ISO)

tRNA re-export from nucleus (IBA)

Cellular Component

cytoplasm (IBA,ISO)

cytosol (IEA,ISO)

nuclear matrix (IBA)

nuclear pore (IBA,ISO)

nucleoplasm (IEA,ISO)

Molecular Function

protein binding (ISO)

small GTPase binding (IEA)

tRNA binding (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA transport pathway (IEA)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	Pipeline to import KEGG annotations from KEGG into RGD
4.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9660920

Genomics

Comparative Map Data

Xpot
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	57,111,536 - 57,151,847 (-)	NCBI
Rnor_6.0 Ensembl	7	63,690,053 - 63,728,988 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	7	63,688,646 - 63,728,988 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	7	63,912,373 - 63,951,227 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	60,898,206 - 60,937,868 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	7	60,919,844 - 60,958,675 (-)	NCBI
Celera	7	53,854,337 - 53,893,237 (-)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

XPOT
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	12	64,404,392 - 64,451,125 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	12	64,404,392 - 64,451,125 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	12	64,798,172 - 64,844,905 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	63,084,500 - 63,128,731 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	12	63,084,499 - 63,128,728	NCBI
Celera	12	64,462,903 - 64,506,901 (+)	NCBI
Cytogenetic Map	12	q14.2	NCBI
HuRef	12	61,850,500 - 61,894,809 (+)	NCBI		HuRef
CHM1_1	12	64,765,247 - 64,809,559 (+)	NCBI		CHM1_1

Xpot
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	121,423,285 - 121,462,413 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	10	121,423,285 - 121,462,237 (-)	Ensembl
GRCm38	10	121,587,380 - 121,626,506 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	121,587,380 - 121,626,332 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	121,024,436 - 121,063,372 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	10	120,990,440 - 121,029,376 (-)	NCBI			mm8
Celera	10	123,970,630 - 124,005,131 (-)	NCBI		Celera
Cytogenetic Map	10	D2	NCBI

Xpot
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	11,162,782 - 11,208,849 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	11,162,612 - 11,206,515 (+)	NCBI	ChiLan1.0	ChiLan1.0

XPOT
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	12	24,969,881 - 25,016,517 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	24,969,881 - 25,016,517 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	12	24,469,893 - 24,516,694 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

XPOT
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	7,121,275 - 7,163,692 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	7,121,684 - 7,213,139 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	7,057,551 - 7,099,328 (+)	NCBI
ROS_Cfam_1.0	10	7,231,797 - 7,273,581 (+)	NCBI
UMICH_Zoey_3.1	10	7,097,730 - 7,139,500 (+)	NCBI
UNSW_CanFamBas_1.0	10	7,349,460 - 7,392,166 (+)	NCBI
UU_Cfam_GSD_1.0	10	7,480,924 - 7,522,701 (+)	NCBI

Xpot
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	51,349,390 - 51,388,669 (-)	NCBI
SpeTri2.0	NW_004936545	2,721,437 - 2,762,785 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

XPOT
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	28,716,922 - 28,929,964 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	28,678,971 - 28,875,336 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	32,040,486 - 32,075,831 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

XPOT
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	60,087,492 - 60,132,383 (+)	NCBI
ChlSab1.1 Ensembl	11	60,092,482 - 60,131,948 (+)	Ensembl
Vero_WHO_p1.0	NW_023666037	185,672,658 - 185,717,372 (-)	NCBI

Xpot
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624802	3,915,852 - 3,953,791 (-)	NCBI

Position Markers

RH141504

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	57,113,943 - 57,114,105 (+)	MAPPER
Rnor_6.0	7	63,691,054 - 63,691,215	NCBI	Rnor6.0
Rnor_5.0	7	63,913,374 - 63,913,535	UniSTS	Rnor5.0
RGSC_v3.4	7	60,899,207 - 60,899,368	UniSTS	RGSC3.4
Celera	7	53,855,338 - 53,855,499	UniSTS
RH 3.4 Map	7	498.7	UniSTS
Cytogenetic Map	7	q22	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	2920071	124838025	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	12328467	67193263	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	12328467	106995532	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	12687850	67801690	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	22168412	67168412	Rat
10755451	Coatc11	Coat color QTL 11		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	24731465	69731465	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	25365633	93155402	Rat
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	28204653	73204653	Rat
1641885	Alcrsp9	Alcohol response QTL 9			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	7	31381529	76381529	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	32035053	77035053	Rat
61439	Cia8	Collagen induced arthritis QTL 8	5.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	32572942	77572942	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	33044449	71352127	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	35867729	80867729	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	35867729	93155402	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	38547706	83547706	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	40872682	85872682	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	40872682	85872682	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	45301573	90301573	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	48118835	128611831	Rat
634326	Hc3	Hypercalciuria QTL 3	2.1		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	7	50252103	95252103	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	50704769	128085642	Rat
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	50793818	95793818	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	51251919	118477612	Rat
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	51251919	145729302	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	51252005	111589099	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	53200344	98200344	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	54259512	99259512	Rat
10059605	Kidm47	Kidney mass QTL 47	2.91	0.05	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	54534996	73293934	Rat
2317059	Aia15	Adjuvant induced arthritis QTL 15	2.46		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	55072862	69399731	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	55072862	123602998	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	55072862	123602998	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	55072862	123602998	Rat
2300178	Bmd54	Bone mineral density QTL 54	5.3	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	7	55495689	100495689	Rat
2293644	Bmd29	Bone mineral density QTL 29	5.4	0.0001	femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	7	55495689	100495689	Rat
2293667	Bss42	Bone structure and strength QTL 42	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	7	55495689	100495689	Rat
2293678	Bss24	Bone structure and strength QTL 24	6.71	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	7	55495689	100495689	Rat
2293685	Bmd21	Bone mineral density QTL 21	4.2	0.0003	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	7	55495689	100495689	Rat
2293696	Bmd32	Bone mineral density QTL 32	5.1	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	7	55495689	100495689	Rat
2293707	Bss32	Bone structure and strength QTL 32	7.64	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	55495689	100495689	Rat
1300151	Bp181	Blood pressure QTL 181	3.36		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	7	61047589	113228378	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	502
Count of miRNA genes:	256
Interacting mature miRNAs:	325
Transcripts:	ENSRNOT00000009645
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	40	57	41	19	41	7	7	74	35	41	11	7
Low		3					1	4					1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000009645 ⟹ ENSRNOP00000009645

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	63,690,053 - 63,728,988 (-)	Ensembl

RefSeq Acc Id:

NM_001108102 ⟹ NP_001101572

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	57,112,943 - 57,151,847 (-)	NCBI
Rnor_6.0	7	63,690,053 - 63,728,988 (-)	NCBI
Rnor_5.0	7	63,912,373 - 63,951,227 (-)	NCBI
RGSC_v3.4	7	60,898,206 - 60,937,868 (-)	RGD
Celera	7	53,854,337 - 53,893,237 (-)	RGD

Sequence:

show sequence

CCCCGCTCCGCGCCACGCAGGAGAAGGCGCCCGGGGAACGCCGAGCGCGGAGAGGAGCGCGGCC
CGGGCCGGCTCCGGCGCTAGCGCTGCGGCCGTAGTGGAGGACTACAGCGACAAGGACGAGGGCC
GCTCTCCGTGCTCCCTGCGTACGGCGCCGCTCCTTGCGGCTGGCCGACCCCTCGGGAGTGCAGG
CAAGGAAGAGATATTGGAGTGATGATGATTGTGGATCCTTCTGTGGGATTAGAAGCCACGTCTG
TTGCGATCAGAAAACTCCAGGAATAGCGGCAGAGATGGACGAGCAGGCTCTTTTGGGGTTAAAT
CCGAATGCCGATTCAGACTTTAGACAAAGGGCCCTGGCTTATTTTGAGCAGTTAAAGATTTCCC
CAGATGCCTGGCAGGTGTGTGCAGAGGCTCTAGCACAGAAGACATACAGTGATGATCACGTAAA
GTTTTTCTGCTTCCAAGTTTTAGAGCATCAAGTTAAATACAAGTACTCAGAGCTCAGCACTGCT
CAGCAACAGCTCATCAGGGGGACGCTTCTCTCATGGCTTCAGGCTCAGATGCTGAATCCCCAGC
CAGAGAAGACCTTCATCCGAAACAAAGCAGCCCAAGTCTTCGCCTTGCTCTTTGTTACAGAGTA
TCTCACTAAATGGCCCAAGTTTTTTTTTGACATTCTCTCAGTTGTGGACCTAAACCCAAGGGGA
GTGGATCTGTACCTGCGAATCCTCATGGCCATCGATTCAGAGCTGGTGGACCGGGATGTGGTTC
ATACATCAGAGGCAAGTAACTTCGGGTGCACGGGGTTTGAGGCTCGCAGGAATACTCTGATAAA
AGATACCATGAGGGAACAGTGCATTCCAAATCTGGTGGAATCGTGGTACCAGATTCTACACAAT
TACCAGTATACTAATTCAGAAGTGCTGTGCCAGTGCCTTGAAGTAGTTGGGGCTTACGTCTCCT
GGATAGACTTATCCCTTATAGCCAATGATAGGTTTATAAATATGCTGCTAGGTCATATGTCAGT
AGAAGTTCTACGAGAAGAAGCATGTGACTGTTTGTTTGAAATTGTAAATAAAGGGATGGACCCT
GTGGACAAGATGAAACTAGTAGAATCCTTGTGTCAAGTATTGCAGACTGCGGGGTTTTTCAGCA
TTGATCAGGAAGAAGATTTGGACTTTGTGGCCAGATTTTCTAAGCTGGTAAATGGAATGGGACA
GTCGTTAATAGTTAGCTGGACTAAATTAATTAAGAATGGGGCTGTCAAGAATGCTCAAGAGGCA
CTGGAAGCTATTGAGACCAAAGTGCCACTTATGTTACAGCTGCTAGTTCATGAGGACGATGACA
TTTCCTCCAACATCATTGGGTTTTGTTACGATTATCTCCATATCCTGAAACAGCTTTCAGTGCT
CTCGGATCAGCAAAAAGCTAATGTAGAGGCAATCATGTTGGCCGTTATGAAAAAATTGACCTAT
GATGAAGAATATAACTTTGAAAATGAGGGTGAAGATGAAGCCATGTTTGTAGAATACAGAAAAC
AGCTGAAGTTACTGTTGGACAGACTTGCGCAGGTGTCGCCAGAGCTGGTGCTGGCTTCTGTTCG
CCGAGTCTTCAGCGCCACGCTGCAGAACTGGCAGACCACGCGCTTCATGGAAGTTGAAGTAGCA
GTGAGATTGCTGTACATGCTGGCGGAAGCTCTCCCGGTGTCCCATGGCGCTCACTTCTCAGGTG
ACGTGTCAAAAGCGAGTGCTTTGCAGGACATGATGCGGACGTTGGTAACATCAGGAGTCAGTTC
CTACCAGCACACATCTGTGACCCTGGAGTTCTTTGAAACTGTCGTTCGCTATGAGAAGTTTTTC
ACAGTTGAACCTCAGCACATCCCCTGTGTACTAATGGCTTTCTTAGATCACAGAGGTCTGTGGC
ATTCCAGTGCTAAAGTCCGGAGCAGAACTGCCTACCTGTTTTCTAGATTTGTCAAGTCTCTCAA
TAAACAAATGAATCCTTACATTGAGGATATATTGAATAGAATACAGGATTTATTAGCCCTTTCT
CCACCCGAGAATGGGTACCAGTCCTTGCTGAGTAGCGACGACCAGCTCTTCATTTATGAAACAG
CCGGGGCGCTGATTGTTAACAGCGAATACCCCGCAGAACATAAGCAGGCCTTAATGAAGGACCT
CTTGACGCCACTGATGGAGAGGTTTAAGGTTCTGTTGGAAAAGCTGATGATGGCCCAGGATGAA
GAGAGACAAGTATCTCTTGCAGATAGTCTCAACCACGCGGTTGGATTCGCCAGGTGTTCTTCCA
GAGAGCAAAGCCCTAGGACTGGTCCTCCCCGGCCCCGCCGTGATCAGGAGCTCCAGTTCATAAT
TTATAAAGAAGCAGTTCGTGTGTACCATTTACATTGGTCCTGTACACTGCTTCCAGCATATTGC
GGTGTATGTGGGATTTTCTGTAAAATGGGTGTAATTTTTCCCTAAAGAAGGTGTGTGACAACAA
GAGAGGTTGCCTGCATGCCAGTTTAAATTGTTTATGTAAAAATGCTGTTATAAGACATAGATTT
ATCCTAGTTCCTTAATTTTTTTCCTTATATGAAACTTTAAAGTTCTTTATAAAATACAGCAGTG
CAAAACTAACAAGTTGAACGTAAGGTTGGAAATGTTCAGTTTTATGTGTGCAGACACATAAGCT
ATGGGGTAACAATCAAAACGTAATCTTTTGTAGATAGCCATTACATTTCTTTAAACTATTTCAA
TGCCAATGTATATTCTATAAGAGAATGGGTTCCTAATTCAGTCGGTTTAAAAGCAGGTGCTGGT
GTTACACACTTTTTATAAAAAATAAATTTTACATAGTGAAATATACCAAGTCTTTTCCGGAATT
ATTACAGAGAGCCTCCTTTTCTCACCTTAGTTATTCTGATCTTCCCCCTAACGATTTGCAAATG
TGATGTGGGTGCCCTGTTTCACAGACTGCCCCAGAGGGAACACAGGTCTTTTGAATGCACTAGA
AACCAGCTCTGTCAGTCTGTGATAGGATCATAGAGCCCAGTGTTTTTCTATATTAGATGTCCTC
AGAACACAGCACACTTGGACTTTTTGTTTGTTTGTTTTTGTCTAGAGACTGGGTCTCACTATAG
AACAGCCTGCCTCCCGTGGGGGGGTGGGGTGCTGGGGAGGGCTGGGAAAGACTGGAAAGTCCAG
CCACACAGCTAGAGGCATTTACATTGAAATCTGTTTCTATTGTAATCGCCCAGTGAAAGGGAAA
AGGATCAGAAGTTACAGGTCATTCTCAGCCGCATAGTGAATTTGAGGTCAGCCTGGGCAGCACG
AACATCTGTCTAAAAATGCAATCAGTAAAAGCCTGAACTCTGTTGCTAAGGGCATATTAGTGGT
GAGGACCATCCCCAGTGCCCCAGAACAGGAGGGGACACAAGATGTCAGGAGAGATTTGCCTTCT
CCTTTGGGCTGTTCCCTAAAATCTTTTTAAGTGTGTTTGTGTGTGCACATATGT

hide sequence

RefSeq Acc Id:

XM_006241399 ⟹ XP_006241461

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	57,111,536 - 57,151,785 (-)	NCBI
Rnor_6.0	7	63,688,646 - 63,728,876 (-)	NCBI
Rnor_5.0	7	63,912,373 - 63,951,227 (-)	NCBI

Sequence:

show sequence

GACAAGGACGAGGGCCGCTCTCCGTGCTCCCTGCGTACGGCGCCGCTCCTTGCGGCTGGCCGAC
CCCTCGGGAGTGCAGATGATTGTGGATCCTTCTGTGGGATTAGAAGCCACGTCTGTTGCGATCA
GAAAACTCCAGGAATAGCGGCAGAGATGGACGAGCAGGCTCTTTTGGGGTTAAATCCGAATGCC
GATTCAGACTTTAGACAAAGGGCCCTGGCTTATTTTGAGCAGTTAAAGATTTCCCCAGATGCCT
GGCAGGTGTGTGCAGAGGCTCTAGCACAGAAGACATACAGTGATGATCACGTAAAGTTTTTCTG
CTTCCAAGTTTTAGAGCATCAAGTTAAATACAAGTACTCAGAGCTCAGCACTGCTCAGCAACAG
CTCATCAGGGGGACGCTTCTCTCATGGCTTCAGGCTCAGATGCTGAATCCCCAGCCAGAGAAGA
CCTTCATCCGAAACAAAGCAGCCCAAGTCTTCGCCTTGCTCTTTGTTACAGAGTATCTCACTAA
ATGGCCCAAGTTTTTTTTTGACATTCTCTCAGTTGTGGACCTAAACCCAAGGGGAGTGGATCTG
TACCTGCGAATCCTCATGGCCATCGATTCAGAGCTGGTGGACCGGGATGTGGTTCATACATCAG
AGGAGGCTCGCAGGAATACTCTGATAAAAGATACCATGAGGGAACAGTGCATTCCAAATCTGGT
GGAATCGTGGTACCAGATTCTACACAATTACCAGTATACTAATTCAGAAGTGCTGTGCCAGTGC
CTTGAAGTAGTTGGGGCTTACGTCTCCTGGATAGACTTATCCCTTATAGCCAATGATAGGTTTA
TAAATATGCTGCTAGGTCATATGTCAGTAGAAGTTCTACGAGAAGAAGCATGTGACTGTTTGTT
TGAAATTGTAAATAAAGGGATGGACCCTGTGGACAAGATGAAACTAGTAGAATCCTTGTGTCAA
GTATTGCAGACTGCGGGGTTTTTCAGCATTGATCAGGAAGAAGATTTGGACTTTGTGGCCAGAT
TTTCTAAGCTGGTAAATGGAATGGGACAGTCGTTAATAGTTAGCTGGACTAAATTAATTAAGAA
TGGGGCTGTCAAGAATGCTCAAGAGGCACTGGAAGCTATTGAGACCAAAGTGCCACTTATGTTA
CAGCTGCTAGTTCATGAGGACGATGACATTTCCTCCAACATCATTGGGTTTTGTTACGATTATC
TCCATATCCTGAAACAGCTTTCAGTGCTCTCGGATCAGCAAAAAGCTAATGTAGAGGCAATCAT
GTTGGCCGTTATGAAAAAATTGACCTATGATGAAGAATATAACTTTGAAAATGAGGGTGAAGAT
GAAGCCATGTTTGTAGAATACAGAAAACAGCTGAAGTTACTGTTGGACAGACTTGCGCAGGTGT
CGCCAGAGCTGGTGCTGGCTTCTGTTCGCCGAGTCTTCAGCGCCACGCTGCAGAACTGGCAGAC
CACGCGCTTCATGGAAGTTGAAGTAGCAGTGAGATTGCTGTACATGCTGGCGGAAGCTCTCCCG
GTGTCCCATGGCGCTCACTTCTCAGGTGACGTGTCAAAAGCGAGTGCTTTGCAGGACATGATGC
GGACGTTGGTAACATCAGGAGTCAGTTCCTACCAGCACACATCTGTGACCCTGGAGTTCTTTGA
AACTGTCGTTCGCTATGAGAAGTTTTTCACAGTTGAACCTCAGCACATCCCCTGTGTACTAATG
GCTTTCTTAGATCACAGAGGTCTGTGGCATTCCAGTGCTAAAGTCCGGAGCAGAACTGCCTACC
TGTTTTCTAGATTTGTCAAGTCTCTCAATAAACAAATGAATCCTTACATTGAGGATATATTGAA
TAGAATACAGGATTTATTAGCCCTTTCTCCACCCGAGAATGGGTACCAGTCCTTGCTGAGTAGC
GACGACCAGCTCTTCATTTATGAAACAGCCGGGGCGCTGATTGTTAACAGCGAATACCCCGCAG
AACATAAGCAGGCCTTAATGAAGGACCTCTTGACGCCACTGATGGAGAGGTTTAAGGTTCTGTT
GGAAAAGCTGATGATGGCCCAGGATGAAGAGAGACAAGTATCTCTTGCAGATAGTCTCAACCAC
GCGGTTGGATTCGCCAGTCGGACCAGCAAGGCCTTCAGCAACAAGCAGACTGTGAAGCAGTGCG
GTTGCTCCCAAGTCTACCTGGACTGTTTACAGACGTTTTTGCCAGCGCTCAGCTGCCCTTTACA
AAAGGACGTTCTCCGAAGCGGGGTTCGGACCTTCCTTCATCGAATGATCATCTGCCTAGAGGAA
GAGGTTCTTCCGTTCATCCCCTCTGCCTCAGAGCACATGCTCAAAGACTGCGAAGCGAAAGACC
TCCAGGAGTTCATTCCACTCATCAACCAGATCACCGCCAAGTTCAAGATGCAGGTGTCCCCATT
CCTACAGCAGATGTTCATGCCCCTGCTTCATGCCATCTTTGAAGTGCTGCTGCGGCCTGCGGAA
GACAATGACCAGTCAGCGGCGTTGGAGAAGCAGATGCTGAGGAGGAGTTACTTCGCCTTCCTGC
AGACGGTCACTGGCAGTGGGATGAGTGAAGTGATTGCAAATCAAGGTGCAGAAAATGTGGAACG
GGTGCTGGTTACTGTCATCCAAGGAGCTGTTGAGTATCCAGATCCGACCGCACAGAAAACATGT
TTTATCATCCTCTCAAAGCTGGTGGAGCTCTGGGGAGGTAAAGACGGACCAGCAGGCTTTGCTG
ACTTTGTGTATAAGCACATCGTCCCGGCATGTTTCCTGGCCCCTTTAAAGCAGACCTTTGACCT
GGCAGATGCACAGACAGTATTGGCGCTTTCTGAGTGTGCCGTGACTCTGAAAACAATTCATCTC
AAACGGGGCCCCGAATGTGTTCAGTATCTTCAGCAAGAATACCTGCCCTCCTTGCAAGTCGCTC
CAGAAATAATTCAGGAGTTCTGTCAAGCACTTCAGCAGCCTGATGCTAAAGTTTTTAAAAATTA
CCTAAAGGTGTTCTTCCAGAGAGCAAAGCCCTAGGACTGGTCCTCCCCGGCCCCGCCGTGATCA
GGAGCTCCAGTTCATAATTTATAAAGAAGCAGTTCGTGTGTACCATTTACATTGGTCCTGTACA
CTGCTTCCAGCATATTGCGGTGTATGTGGGATTTTCTGTAAAATGGGTGTAATTTTTCCCTAAA
GAAGGTGTGTGACAACAAGAGAGGTTGCCTGCATGCCAGTTTAAATTGTTTATGTAAAAATGCT
GTTATAAGACATAGATTTATCCTAGTTCCTTAATTTTTTTCCTTATATGAAACTTTAAAGTTCT
TTATAAAATACAGCAGTGCAAAACTAACAAGTTGAACGTAAGGTTGGAAATGTTCAGTTTTATG
TGTGCAGACACATAAGCTATGGGGTAACAATCAAAACGTAATCTTTTGTAGATAGCCATTACAT
TTCTTTAAACTATTTCAATGCCAATGTATATTCTATAAGAGAATGGGTTCCTAATTCAGTCGGT
TTAAAAGCAGGTGCTGGTGTTACACACTTTTTATAAAAAATAAATTTTACATAGTGAAATATAC
CAAGTCTTTTCCGGAATTATTACAGAGAGCCTCCTTTTCTCACCTTAGTTATTCTGATCTTCCC
CCTAACGATTTGCAAATGTGATGTGGGTGCCCTGTTTCACAGACTGCCCCAGAGGGAACACAGG
TCTTTTGAATGCACTAGAAACCAGCTCTGTCAGTCTGTGATAGGATCATAGAGCCCAGTGTTTT
TCTATATTAGATGTCCTCAGAACACAGCACACTTGGACTTTTTGTTTGTTTGTTTTTGTCTAGA
GACTGGGTCTCACTATAGAACAGCCTGCCTCCCGTGGGGGGGTGGGGTGCTGGGGAGGGCTGGG
AAAGACTGGAAAGTCCAGCCACACAGCTAGAGGCATTTACATTGAAATCTGTTTCTATTGTAAT
CGCCCAGTGAAAGGGAAAAGGATCAGAAGTTACAGGTCATTCTCAGCCGCATAGTGAATTTGAG
GTCAGCCTGGGCAGCACGAACATCTGTCTAAAAATGCAATCAGTAAAAGCCTGAACTCTGTTGC
TAAGGGCATATTAGTGGTGAGGACCATCCCCAGTGCCCCAGAACAGGAGGGGACACAAGATGTC
AGGAGAGATTTGCCTTCTCCTTTGGGCTGTTCCCTAAAATCTTTTTAAGTGTGTTTGTGTGTGC
ACATATGTGGGGGAGAATAAGAACCTTACAGGGTCTTCTACCCAGAGGGATGTCTGCCCCAGTC
CCAGGTTGCAGGTGTTGACTGCGCAGGTTTGCTATGGGATCCAAATTCAGGAGCCATCTTGTTC
ATCGAGCACTTTGTCTGCTTGAGCCCCCACCTCCTGCCCCCTAGATTTTATTCTAAATTGTGCA
CACGAATCTTTTTCTGATTTTAACTCCACAAGAGATAGGATTTTCCTTCATTATAAAATGAAAG
CAGTGAAGTAAACTGACAACTAGGAATCTATTTCATCTACTAAATGATGAAGATAGTGAAATAT
ATAGTACTTCTATAAATAATGACTTTTTAAAAAAAAATAGGTAAGTGCGCCAGGTTTGGTGGCT
TCTGCCTGTAGTCACAGCATTCAGAGGGGGGCGAGGCCAGTCTGGGCTAGAGTGAGACTCAGTT
TCAAAAACAACAAAAAGCAAGACAAGCAAAAGTGGGCATCTCTTTGCTGTGCACTGTGGGAGAT
GTAATAGCATCTGCGGGCCACAGTGAGATTGTATGACGTATTGTAGTACTTAGCGGAGCACAGT
TGTTAAAAGCGTGTATAATGTGGACTCTGGATCCAGATTAAGTAGGTTCAAACACCACTTAACA
CCGGTAACTGATTTTAGGACCTTGAGCAAGTTAAATAACTTCTTCCTGCCTTGGTTTCCCAGTC
AGAAACGGAGGTGCAGGGAGGGGGGACAATGGTAGCTACCTCATAACTTGTTAAGAACCCAATG
AATTAAGATACAGGTCTCAGTATTAGCTTGTATTTCTGTACTATCGAGTCCACACGTGGCTCTT
TAAAGCCCTACAGTGGGTTCACATGTGTTTAGACCTGAAAAATCAGGACATGGAAATCAGAGTG
TATAGATAAAGAATTTCATGTTAATGTAATCATGTCTAATAATCCTCATCTTCATTCCTTGAGA
TTACCCAAGTATGATCATGATCAAGAAACCGTTCCGTCATTAAGTACCTTATTTTTACAAGCAG
GCACCCAAATAATTGTCTCTAGGGAATCTTATTTGTTAAGTGAGAAGACAGAGGGTTTTATGGT
GCCTGAGTTAGTCCTGTGCCTAAGCAGTTGTTTCAGTCTCCATGCTTGCTAATGGTTTCACAAG
TGGCTTGATTCTCTTAGAAAGTATTATGTGGTATTTTAATGTGTATCACTTCTGTGGTAAACAT
GTGAAGTCCTTTGGCTTAGTCATGTTTCCCCCCGTAACTTTTGAGCTGTGGGCTTTTCTGTTGG
AAGAAACTTGGATGGACCTGTCATGTCATTATCAGAATTGAAATAGATTTCATTGTAAGCAGGA
AGTGCATTTGCTGTTAGAACGGTTTCATTGCCTAAACTGTTTAAAATTCTAATAAAGTAACTTT
CTAAGAA

hide sequence

RefSeq Acc Id:

XM_039079137 ⟹ XP_038935065

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	57,111,536 - 57,151,791 (-)	NCBI

RefSeq Acc Id:

XM_039079138 ⟹ XP_038935066

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	57,111,536 - 57,144,511 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101572	(Get FASTA)	NCBI Sequence Viewer
	XP_006241461	(Get FASTA)	NCBI Sequence Viewer
	XP_038935065	(Get FASTA)	NCBI Sequence Viewer
	XP_038935066	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM16545	(Get FASTA)	NCBI Sequence Viewer
	EDM16546	(Get FASTA)	NCBI Sequence Viewer
	EDM16547	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001101572 ⟸ NM_001108102

- UniProtKB:

D3ZZ62 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDEQALLGLNPNADSDFRQRALAYFEQLKISPDAWQVCAEALAQKTYSDDHVKFFCFQVLEHQV
KYKYSELSTAQQQLIRGTLLSWLQAQMLNPQPEKTFIRNKAAQVFALLFVTEYLTKWPKFFFDI
LSVVDLNPRGVDLYLRILMAIDSELVDRDVVHTSEASNFGCTGFEARRNTLIKDTMREQCIPNL
VESWYQILHNYQYTNSEVLCQCLEVVGAYVSWIDLSLIANDRFINMLLGHMSVEVLREEACDCL
FEIVNKGMDPVDKMKLVESLCQVLQTAGFFSIDQEEDLDFVARFSKLVNGMGQSLIVSWTKLIK
NGAVKNAQEALEAIETKVPLMLQLLVHEDDDISSNIIGFCYDYLHILKQLSVLSDQQKANVEAI
MLAVMKKLTYDEEYNFENEGEDEAMFVEYRKQLKLLLDRLAQVSPELVLASVRRVFSATLQNWQ
TTRFMEVEVAVRLLYMLAEALPVSHGAHFSGDVSKASALQDMMRTLVTSGVSSYQHTSVTLEFF
ETVVRYEKFFTVEPQHIPCVLMAFLDHRGLWHSSAKVRSRTAYLFSRFVKSLNKQMNPYIEDIL
NRIQDLLALSPPENGYQSLLSSDDQLFIYETAGALIVNSEYPAEHKQALMKDLLTPLMERFKVL
LEKLMMAQDEERQVSLADSLNHAVGFARCSSREQSPRTGPPRPRRDQELQFIIYKEAVRVYHLH
WSCTLLPAYCGVCGIFCKMGVIFP

hide sequence

RefSeq Acc Id:

XP_006241461 ⟸ XM_006241399

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDEQALLGLNPNADSDFRQRALAYFEQLKISPDAWQVCAEALAQKTYSDDHVKFFCFQVLEHQV
KYKYSELSTAQQQLIRGTLLSWLQAQMLNPQPEKTFIRNKAAQVFALLFVTEYLTKWPKFFFDI
LSVVDLNPRGVDLYLRILMAIDSELVDRDVVHTSEEARRNTLIKDTMREQCIPNLVESWYQILH
NYQYTNSEVLCQCLEVVGAYVSWIDLSLIANDRFINMLLGHMSVEVLREEACDCLFEIVNKGMD
PVDKMKLVESLCQVLQTAGFFSIDQEEDLDFVARFSKLVNGMGQSLIVSWTKLIKNGAVKNAQE
ALEAIETKVPLMLQLLVHEDDDISSNIIGFCYDYLHILKQLSVLSDQQKANVEAIMLAVMKKLT
YDEEYNFENEGEDEAMFVEYRKQLKLLLDRLAQVSPELVLASVRRVFSATLQNWQTTRFMEVEV
AVRLLYMLAEALPVSHGAHFSGDVSKASALQDMMRTLVTSGVSSYQHTSVTLEFFETVVRYEKF
FTVEPQHIPCVLMAFLDHRGLWHSSAKVRSRTAYLFSRFVKSLNKQMNPYIEDILNRIQDLLAL
SPPENGYQSLLSSDDQLFIYETAGALIVNSEYPAEHKQALMKDLLTPLMERFKVLLEKLMMAQD
EERQVSLADSLNHAVGFASRTSKAFSNKQTVKQCGCSQVYLDCLQTFLPALSCPLQKDVLRSGV
RTFLHRMIICLEEEVLPFIPSASEHMLKDCEAKDLQEFIPLINQITAKFKMQVSPFLQQMFMPL
LHAIFEVLLRPAEDNDQSAALEKQMLRRSYFAFLQTVTGSGMSEVIANQGAENVERVLVTVIQG
AVEYPDPTAQKTCFIILSKLVELWGGKDGPAGFADFVYKHIVPACFLAPLKQTFDLADAQTVLA
LSECAVTLKTIHLKRGPECVQYLQQEYLPSLQVAPEIIQEFCQALQQPDAKVFKNYLKVFFQRA
KP

hide sequence

RefSeq Acc Id:

ENSRNOP00000009645 ⟸ ENSRNOT00000009645

RefSeq Acc Id:	XP_038935065 ⟸ XM_039079137
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038935066 ⟸ XM_039079138
- Peptide Label:	isoform X3

Protein Domains

Importin N-terminal

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695228

Promoter ID:

EPDNEW_R5752

Type:

initiation region

Name:

Xpot_1

Description:

exportin for tRNA

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	63,729,042 - 63,729,102	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305562	AgrOrtholog
Ensembl Genes	ENSRNOG00000007088	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000009645	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000009645	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	Exportin-1/Importin-b-like	UniProtKB/TrEMBL
	Importin-b_N	UniProtKB/TrEMBL
	XPOT	UniProtKB/TrEMBL
KEGG Report	rno:314879	UniProtKB/TrEMBL
NCBI Gene	314879	ENTREZGENE
PANTHER	PTHR15952	UniProtKB/TrEMBL
Pfam	IBN_N	UniProtKB/TrEMBL
	Xpo1	UniProtKB/TrEMBL
PhenoGen	Xpot	PhenoGen
SMART	IBN_N	UniProtKB/TrEMBL
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
UniProt	D3ZZ62	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-22	Xpot	exportin for tRNA	Xpot	exportin, tRNA	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-02	Xpot	exportin, tRNA	Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	Xpot_predicted	exportin, tRNA (nuclear export receptor for tRNAs) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Xpot_predicted	exportin, tRNA (nuclear export receptor for tRNAs) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)