Xpot (exportin for tRNA) - Rat Genome Database

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Gene: Xpot (exportin for tRNA) Chinchilla lanigera
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Symbol: Xpot
Name: exportin for tRNA
RGD ID: 8887285
Description: ENCODES a protein that exhibits tRNA binding (ortholog); INVOLVED IN tRNA export from nucleus (ortholog); ASSOCIATED WITH mucopolysaccharidosis type IIID (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear pore (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: exportin, tRNA; exportin-T
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545811,162,782 - 11,208,849 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545811,162,612 - 11,206,515 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
nuclear pore  (ISO)
nucleoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Xpot
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545811,162,782 - 11,208,849 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545811,162,612 - 11,206,515 (+)NCBIChiLan1.0ChiLan1.0
XPOT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381264,404,392 - 64,451,125 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1264,404,392 - 64,451,125 (+)EnsemblGRCh38hg38GRCh38
GRCh371264,798,172 - 64,844,905 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361263,084,500 - 63,128,731 (+)NCBINCBI36Build 36hg18NCBI36
Build 341263,084,499 - 63,128,728NCBI
Celera1264,462,903 - 64,506,901 (+)NCBICelera
Cytogenetic Map12q14.2NCBI
HuRef1261,850,500 - 61,894,809 (+)NCBIHuRef
CHM1_11264,765,247 - 64,809,559 (+)NCBICHM1_1
T2T-CHM13v2.01264,382,995 - 64,429,752 (+)NCBIT2T-CHM13v2.0
Xpot
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910121,423,285 - 121,462,411 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10121,423,285 - 121,462,237 (-)EnsemblGRCm39 Ensembl
GRCm3810121,587,380 - 121,626,506 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10121,587,380 - 121,626,332 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710121,024,436 - 121,063,372 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610120,990,440 - 121,029,376 (-)NCBIMGSCv36mm8
Celera10123,970,630 - 124,005,131 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1069.86NCBI
Xpot
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8758,997,025 - 59,037,506 (-)NCBIGRCr8
mRatBN7.2757,111,536 - 57,152,013 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl757,111,536 - 57,152,099 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx759,023,288 - 59,063,697 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0761,226,165 - 61,266,574 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0761,003,873 - 61,044,282 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0763,688,646 - 63,728,988 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl763,690,053 - 63,728,988 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0763,912,373 - 63,951,227 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4760,898,206 - 60,937,868 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1760,919,844 - 60,958,675 (-)NCBI
Celera753,854,337 - 53,893,237 (-)NCBICelera
Cytogenetic Map7q22NCBI
XPOT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21029,917,982 - 29,962,413 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11229,914,753 - 29,959,184 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01224,469,893 - 24,516,694 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11224,969,881 - 25,016,517 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1224,969,881 - 25,016,517 (-)Ensemblpanpan1.1panPan2
XPOT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1107,121,275 - 7,163,692 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl107,121,684 - 7,213,139 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha107,057,551 - 7,099,328 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0107,231,797 - 7,273,581 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl107,231,781 - 7,273,577 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1107,097,730 - 7,139,500 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0107,349,460 - 7,392,166 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0107,480,924 - 7,522,701 (+)NCBIUU_Cfam_GSD_1.0
Xpot
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494551,349,390 - 51,388,669 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365452,721,379 - 2,762,793 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365452,721,437 - 2,762,785 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
XPOT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl528,828,566 - 28,875,325 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1528,678,971 - 28,875,336 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2532,040,486 - 32,075,831 (+)NCBISscrofa10.2Sscrofa10.2susScr3
XPOT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11160,087,492 - 60,132,383 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1160,092,482 - 60,131,948 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037185,672,658 - 185,717,372 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Xpot
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248023,919,994 - 3,953,843 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248023,915,852 - 3,953,791 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000016718   ⟹   ENSCLAP00000016554
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545811,162,782 - 11,208,849 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000016719   ⟹   ENSCLAP00000016555
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545811,175,788 - 11,208,849 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000016720   ⟹   ENSCLAP00000016556
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545811,177,457 - 11,204,340 (+)Ensembl
RefSeq Acc Id: XM_005397439   ⟹   XP_005397496
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545811,162,612 - 11,206,515 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013520915   ⟹   XP_013376369
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545811,162,612 - 11,206,515 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013520916   ⟹   XP_013376370
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545811,174,879 - 11,206,515 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013520917   ⟹   XP_013376371
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545811,178,872 - 11,206,515 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013520918   ⟹   XP_013376372
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545811,180,825 - 11,206,515 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005397496   ⟸   XM_005397439
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VRR5 (UniProtKB/TrEMBL),   A0A8C2VLJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013376369   ⟸   XM_013520915
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VLJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013376370   ⟸   XM_013520916
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VLJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013376371   ⟸   XM_013520917
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VLJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013376372   ⟸   XM_013520918
- Peptide Label: isoform X5
- UniProtKB: A0A8C2VLJ9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000016556   ⟸   ENSCLAT00000016720
Ensembl Acc Id: ENSCLAP00000016555   ⟸   ENSCLAT00000016719
Ensembl Acc Id: ENSCLAP00000016554   ⟸   ENSCLAT00000016718
Protein Domains
Importin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011382 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016718 ENTREZGENE
  ENSCLAT00000016718.1 UniProtKB/TrEMBL
  ENSCLAT00000016719 ENTREZGENE
  ENSCLAT00000016719.1 UniProtKB/TrEMBL
  ENSCLAT00000016720.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Exportin-1/Importin-b-like UniProtKB/TrEMBL
  Exportin-T_C UniProtKB/TrEMBL
  Importin-beta_N UniProtKB/TrEMBL
  XPOT UniProtKB/TrEMBL
NCBI Gene Xpot ENTREZGENE
PANTHER EXPORTIN-T UniProtKB/TrEMBL
  PTHR15952 UniProtKB/TrEMBL
Pfam Exportin-T UniProtKB/TrEMBL
  IBN_N UniProtKB/TrEMBL
  Xpo1 UniProtKB/TrEMBL
SMART IBN_N UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C2VLJ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VNK0_CHILA UniProtKB/TrEMBL
  A0A8C2VRR5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Xpot  exportin for tRNA    exportin, tRNA  Symbol and/or name change 5135510 APPROVED