Xpot (exportin, tRNA (nuclear export receptor for tRNAs)) - Rat Genome Database

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Gene: Xpot (exportin, tRNA (nuclear export receptor for tRNAs)) Mus musculus
Analyze
Symbol: Xpot
Name: exportin, tRNA (nuclear export receptor for tRNAs)
RGD ID: 1313663
MGI Page MGI
Description: Predicted to enable tRNA binding activity. Predicted to be involved in tRNA re-export from nucleus. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm and nuclear matrix. Is expressed in several structures, including endocrine gland; female reproductive system; mammary gland; oral epithelium; and trigeminal nerve. Orthologous to human XPOT (exportin for tRNA).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110004L07Rik; 3110065H13Rik; AI452076; C79645; EXPOR; exportin(tRNA); exportin-T; tRNA exportin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm7389  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910121,423,285 - 121,462,411 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10121,423,285 - 121,462,237 (-)EnsemblGRCm39 Ensembl
GRCm3810121,587,380 - 121,626,506 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10121,587,380 - 121,626,332 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710121,024,436 - 121,063,372 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610120,990,440 - 121,029,376 (-)NCBIMGSCv36mm8
Celera10123,970,630 - 124,005,131 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1069.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1-nitropyrene  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
chlorpyrifos  (EXP)
clofibrate  (EXP)
cobalt dichloride  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
fenthion  (EXP)
flutamide  (ISO)
genistein  (ISO)
gentamycin  (ISO)
hydrazine  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
ketoconazole  (ISO)
lead diacetate  (ISO)
methapyrilene  (ISO)
methidathion  (EXP)
methimazole  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
nefazodone  (ISO)
nimesulide  (ISO)
Nutlin-3  (ISO)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
phenobarbital  (ISO)
piroxicam  (ISO)
progesterone  (EXP)
quercetin  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tamibarotene  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
trovafloxacin  (EXP)
tunicamycin  (ISO)
valdecoxib  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO)
cytosol  (IEA,ISO)
nuclear matrix  (IBA)
nuclear pore  (IBA,IEA,ISO)
nucleoplasm  (IEA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583  
PMID:14610273   PMID:14691545   PMID:15489334   PMID:15741177   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16783635   PMID:17967808   PMID:18799693   PMID:21267068   PMID:21873635  
PMID:24194600   PMID:24457600   PMID:27626380   PMID:34255829   PMID:36114006   PMID:38355793  


Genomics

Comparative Map Data
Xpot
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910121,423,285 - 121,462,411 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10121,423,285 - 121,462,237 (-)EnsemblGRCm39 Ensembl
GRCm3810121,587,380 - 121,626,506 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10121,587,380 - 121,626,332 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710121,024,436 - 121,063,372 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610120,990,440 - 121,029,376 (-)NCBIMGSCv36mm8
Celera10123,970,630 - 124,005,131 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1069.86NCBI
XPOT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381264,404,392 - 64,451,125 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1264,404,392 - 64,451,125 (+)EnsemblGRCh38hg38GRCh38
GRCh371264,798,172 - 64,844,905 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361263,084,500 - 63,128,731 (+)NCBINCBI36Build 36hg18NCBI36
Build 341263,084,499 - 63,128,728NCBI
Celera1264,462,903 - 64,506,901 (+)NCBICelera
Cytogenetic Map12q14.2NCBI
HuRef1261,850,500 - 61,894,809 (+)NCBIHuRef
CHM1_11264,765,247 - 64,809,559 (+)NCBICHM1_1
T2T-CHM13v2.01264,382,995 - 64,429,752 (+)NCBIT2T-CHM13v2.0
Xpot
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8758,997,025 - 59,037,506 (-)NCBIGRCr8
mRatBN7.2757,111,536 - 57,152,013 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl757,111,536 - 57,152,099 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx759,023,288 - 59,063,697 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0761,226,165 - 61,266,574 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0761,003,873 - 61,044,282 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0763,688,646 - 63,728,988 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl763,690,053 - 63,728,988 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0763,912,373 - 63,951,227 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4760,898,206 - 60,937,868 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1760,919,844 - 60,958,675 (-)NCBI
Celera753,854,337 - 53,893,237 (-)NCBICelera
Cytogenetic Map7q22NCBI
Xpot
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545811,162,782 - 11,208,849 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545811,162,612 - 11,206,515 (+)NCBIChiLan1.0ChiLan1.0
XPOT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21029,917,982 - 29,962,413 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11229,914,753 - 29,959,184 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01224,469,893 - 24,516,694 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11224,969,881 - 25,016,517 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1224,969,881 - 25,016,517 (-)Ensemblpanpan1.1panPan2
XPOT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1107,121,275 - 7,163,692 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl107,121,684 - 7,213,139 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha107,057,551 - 7,099,328 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0107,231,797 - 7,273,581 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl107,231,781 - 7,273,577 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1107,097,730 - 7,139,500 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0107,349,460 - 7,392,166 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0107,480,924 - 7,522,701 (+)NCBIUU_Cfam_GSD_1.0
Xpot
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494551,349,390 - 51,388,669 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365452,721,379 - 2,762,793 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365452,721,437 - 2,762,785 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
XPOT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl528,828,566 - 28,875,325 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1528,678,971 - 28,875,336 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2532,040,486 - 32,075,831 (+)NCBISscrofa10.2Sscrofa10.2susScr3
XPOT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11160,087,492 - 60,132,383 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1160,092,482 - 60,131,948 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037185,672,658 - 185,717,372 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Xpot
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248023,919,994 - 3,953,843 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248023,915,852 - 3,953,791 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Xpot
1692 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1112
Count of miRNA genes:578
Interacting mature miRNAs:729
Transcripts:ENSMUST00000039810
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884377Skwq3_mskull length QTL 3, 5 week (mouse)10114635905122735905Mouse
26884383Bzwq3_mbi-zygomatic width QTL 3, 5 week (mouse)10114235905122735905Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined88836456122836456Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084079650122041528Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
13801032Hwtf2_mheart weight by femur 2 (mouse)10119835905121835905Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084079650122041528Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84079650122041528Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108575094130530862Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088088254122088391Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
1300796Lmr5_mleishmaniasis resistance 5 (mouse)Not determined10116220635122179828Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039516Ltpr5_mLeishmania tropica response 5 (mouse)1090506901125575232Mouse
27226795Scvln17_msacral vertebrae length 2, 16 week (mouse)10118435905124835905Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108515907130530862Mouse
27226791Feml8_mfemur length 8, 5 week (mouse)10119035905125735869Mouse
26884391Skwq11_mskull length QTL 11, 16 week (mouse)10113535905121635905Mouse
13506931Recrq11_mrecombination rate in male meiosis QTL 11 (mouse)10114335905123635905Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
27226784Tibl4_mtibia length 4, 5 week (mouse)10119035905125435869Mouse
26884443Sklq5_mskull length QTL 5, 5 week (mouse)10119035905124835905Mouse
27226718Tibw3_mtibia width 3, proximal, 10 week (mouse)10118835905125435869Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
11353838Gluq3_mblood glucose QTL 3 (mouse)10120243727125515907Mouse
27095902Scvln11_msacral vertebrae length 2, 10 week (mouse)10110035861125435869Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084079650122041528Mouse
11353834Pcholq2_mplasma cholesterol QTL 2 (mouse)10120243727125515907Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108575094130530862Mouse
26884433Zlq2_mzygomatic length QTL 2, 5 week (mouse)10113535905125735869Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
1301701Aggr1_maggression 1 (mouse)Not determined10119506908125575232Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108515907130530862Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
27226747Metcl10_mmetatarsal-calcaneal length 10, 10 week (mouse)10119035905124835905Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
27226742Metcl4_mmetatarsal-calcaneal length 4, 5 week (mouse)10118135905125435869Mouse
27095926Pglq4_mpelvic girdle length QTL 4, 5 week (mouse)10119035905124835905Mouse
1301758Fcsa3_mfemoral cross-sectional area 3 (mouse)Not determined1089927651123927754Mouse
27226736Metcl15_mmetatarsal-calcaneal length 15, 16 week (mouse)10119035905124835905Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
11353823Homaq2_mhomeostatic model assessment QTL 2 (mouse)10110453347125515907Mouse
11353822Insq12_minsulin QTL 12 (mouse)10110453347125515907Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108575094130530862Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84079650122041528Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226725Tibw1_mtibia width 1, proximal, 5 week (mouse)10102735861123235905Mouse
25394553Skmw68_mskeletal muscle weight 68, TA (mouse)10121376111121855130Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
27226722Tibw7_mtibia width 7, proximal, 16 week (mouse)10108635861125435869Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse
27095906Scvln5_msacral vertebrae length 2, 5 week (mouse)10119035905124835905Mouse

Markers in Region
RH126705  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810121,587,400 - 121,587,608UniSTSGRCm38
MGSCv3710121,024,456 - 121,024,664UniSTSGRCm37
Celera10123,970,650 - 123,970,858UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map10D2UniSTS
Whitehead/MRC_RH101274.11UniSTS
AI452076  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810121,587,430 - 121,587,710UniSTSGRCm38
MGSCv3710121,024,486 - 121,024,766UniSTSGRCm37
Celera10123,970,680 - 123,970,960UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map10D3UniSTS
Whitehead/MRC_RH101275.61UniSTS
RH141504  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810121,589,977 - 121,590,165UniSTSGRCm38
GRCm3883,997,538 - 3,997,733UniSTSGRCm38
MGSCv3710121,027,033 - 121,027,221UniSTSGRCm37
MGSCv3783,997,538 - 3,997,733UniSTSGRCm37
Celera10123,973,227 - 123,973,415UniSTS
Celera84,202,282 - 4,202,477UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map8A1.1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001081056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF464441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY168243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF730330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK393425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK635816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN532914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN669885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO432504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX563118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000039810   ⟹   ENSMUSP00000043488
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10121,423,285 - 121,462,221 (-)Ensembl
GRCm38.p6 Ensembl10121,587,380 - 121,626,316 (-)Ensembl
Ensembl Acc Id: ENSMUST00000217865   ⟹   ENSMUSP00000151828
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10121,443,418 - 121,449,498 (-)Ensembl
GRCm38.p6 Ensembl10121,607,513 - 121,613,593 (-)Ensembl
Ensembl Acc Id: ENSMUST00000218004   ⟹   ENSMUSP00000151722
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10121,423,285 - 121,462,237 (-)Ensembl
GRCm38.p6 Ensembl10121,587,380 - 121,626,332 (-)Ensembl
Ensembl Acc Id: ENSMUST00000218973
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10121,438,207 - 121,440,503 (-)Ensembl
GRCm38.p6 Ensembl10121,602,302 - 121,604,598 (-)Ensembl
Ensembl Acc Id: ENSMUST00000219334   ⟹   ENSMUSP00000151253
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10121,425,524 - 121,436,718 (-)Ensembl
GRCm38.p6 Ensembl10121,589,619 - 121,600,813 (-)Ensembl
RefSeq Acc Id: NM_001081056   ⟹   NP_001074525
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910121,423,285 - 121,462,389 (-)NCBI
GRCm3810121,587,380 - 121,626,332 (-)NCBI
MGSCv3710121,024,436 - 121,063,372 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001359618   ⟹   NP_001346547
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910121,423,285 - 121,462,389 (-)NCBI
GRCm3810121,587,380 - 121,626,332 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001401044   ⟹   NP_001387973
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910121,423,285 - 121,462,389 (-)NCBI
RefSeq Acc Id: NM_001401045   ⟹   NP_001387974
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910121,423,285 - 121,462,389 (-)NCBI
RefSeq Acc Id: XM_006514206   ⟹   XP_006514269
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910121,423,285 - 121,462,088 (-)NCBI
GRCm3810121,587,380 - 121,626,183 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006514207   ⟹   XP_006514270
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910121,423,285 - 121,462,088 (-)NCBI
GRCm3810121,587,380 - 121,626,302 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006514208   ⟹   XP_006514271
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910121,423,285 - 121,462,389 (-)NCBI
GRCm3810121,587,380 - 121,626,189 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245306   ⟹   XP_030101166
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910121,423,285 - 121,462,271 (-)NCBI
GRCm3810121,587,380 - 121,626,421 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245308   ⟹   XP_030101168
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910121,423,285 - 121,462,411 (-)NCBI
GRCm3810121,587,380 - 121,626,506 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001074525   ⟸   NM_001081056
- Peptide Label: isoform 1
- UniProtKB: Q9CRT8 (UniProtKB/Swiss-Prot),   Q52KI1 (UniProtKB/Swiss-Prot),   A0A1W2P7Q6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514269   ⟸   XM_006514206
- Peptide Label: isoform X1
- UniProtKB: Q9CRT8 (UniProtKB/Swiss-Prot),   Q52KI1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006514270   ⟸   XM_006514207
- Peptide Label: isoform X2
- UniProtKB: Q9CRT8 (UniProtKB/Swiss-Prot),   Q52KI1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006514271   ⟸   XM_006514208
- Peptide Label: isoform X3
- UniProtKB: Q9CRT8 (UniProtKB/Swiss-Prot),   Q52KI1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030101168   ⟸   XM_030245308
- Peptide Label: isoform X3
- UniProtKB: Q9CRT8 (UniProtKB/Swiss-Prot),   Q52KI1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030101166   ⟸   XM_030245306
- Peptide Label: isoform X1
- UniProtKB: Q9CRT8 (UniProtKB/Swiss-Prot),   Q52KI1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001346547   ⟸   NM_001359618
- Peptide Label: isoform 1
- UniProtKB: Q9CRT8 (UniProtKB/Swiss-Prot),   Q52KI1 (UniProtKB/Swiss-Prot),   A0A1W2P7Q6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000151722   ⟸   ENSMUST00000218004
Ensembl Acc Id: ENSMUSP00000151828   ⟸   ENSMUST00000217865
Ensembl Acc Id: ENSMUSP00000151253   ⟸   ENSMUST00000219334
Ensembl Acc Id: ENSMUSP00000043488   ⟸   ENSMUST00000039810
RefSeq Acc Id: NP_001387973   ⟸   NM_001401044
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001387974   ⟸   NM_001401045
- Peptide Label: isoform 3
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CRT8-F1-model_v2 AlphaFold Q9CRT8 1-963 view protein structure

Promoters
RGD ID:6820100
Promoter ID:MM_KWN:5797
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000039810,   NM_001081056
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610121,063,151 - 121,063,807 (-)MPROMDB
RGD ID:8673404
Promoter ID:EPDNEW_M14733
Type:initiation region
Name:Xpot_1
Description:Mus musculus exportin, tRNA , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810121,626,372 - 121,626,432EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920442 AgrOrtholog
Ensembl Genes ENSMUSG00000034667 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000039810.8 UniProtKB/Swiss-Prot
  ENSMUST00000217865.2 UniProtKB/TrEMBL
  ENSMUST00000218004 ENTREZGENE
  ENSMUST00000218004.2 UniProtKB/TrEMBL
  ENSMUST00000219334.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Exportin-1/Importin-b-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Exportin-T_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Importin-beta_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  XPOT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:73192 UniProtKB/TrEMBL
MGD MGI:1920442 ENTREZGENE
NCBI Gene 73192 ENTREZGENE
PANTHER EXPORTIN-T UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15952 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Exportin-T UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IBN_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Xpo1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Xpot PhenoGen
SMART IBN_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1W2P6G8_MOUSE UniProtKB/TrEMBL
  A0A1W2P7Q6 ENTREZGENE, UniProtKB/TrEMBL
  A0A1W2P7V1_MOUSE UniProtKB/TrEMBL
  Q52KI1 ENTREZGENE
  Q9CRT8 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q52KI1 UniProtKB/Swiss-Prot