D7Rat89 Marker Search Result - Rat Genome Database

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Marker: D7Rat89

Symbol: D7Rat89
Previously known as: oxsts11468; R0078-B11; 
RGD ID: 38766
Expected Size: 233 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2731,333,917 - 31,334,150 (+)MAPPERmRatBN7.2
Rnor_6.0737,805,257 - 37,805,489NCBIRnor6.0
Rnor_5.0737,850,747 - 37,850,979UniSTSRnor5.0
RGSC_v3.4734,021,826 - 34,022,059RGDRGSC3.4
RGSC_v3.4734,021,827 - 34,022,059UniSTSRGSC3.4
RGSC_v3.1734,042,097 - 34,042,330RGD
Celera728,382,147 - 28,382,379UniSTS
FHH x ACI Map712.2899RGD
FHH x ACI Map712.2899UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer AGCATGCCAGAAGTTCTGTGT
Reverse Primer GCACATGCACAGACTGTCAA
 
Template 
TGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACATTTGCACATGCACAGACTG
TCAAACATGTGGTCATAAGAAGACACCTCTTGGAGCTCCGTTCTCTTCTTCGGTCATAAGGATT
CCAAGGATCAAAGTCATTTGTCTGGCTTTGTCTATAACCATTGAGTTTTGTTGCCAAGGGTATG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGACTGTTTAAAGAGA
TAAAACACAGAACTTCTGGCATGCTAACCAAGTGGTACCGAGCTCGAATTCGTAATCATGGTCA
TAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCA
TAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACT
GCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGG
AGAGCGGTTT
Strain, Expected Size(s)

ACI/N 234 AVN/Orl 234 BBDP/Rhw 242
BBDR/Rhw 242 BC/CpbU 234 BDIX/Han 242
BDVII/Cub 230 BN/SsNHsd 234 BP/Cub 238
BUF/Pit 238 COP/OlaHsd 234 DA/PitN 234
DON/Melb 242 F344/Pit 242 FHH/Eur 230
GH/Omr 242 GK/KyoSwe 230 IS/Kyo 232
LE/Mol 230 LEW/Pit 234 LH/Mav 234
LN/Mav 234 LOU/CHan 234 M520/N 242
MHS/Gib 242 MNR/N 234 MNRA/N 242
MNS/Gib 234 MR/Pit 242 NEDH/K 230
NP9 242 ODU/N 234 OKA/Wsl 234
OM/Ztm 234 P5C 234 SD/Rij 232
SHR/OlaHsd 234 SHRSP/Riv 234 SR/Jr 234
SS/Jr 234 WAG/RijKyo 242 WF/Pit 234
WKY/OlaHsd 236 WN/N 242 WTC/Kyo 234


GenBank Nucleotide CH473960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 33 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat

1 to 10 of 33 rows